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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000229:44917..51721- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113514 ID=BlTCONS00113514|Name=BlTCONS00113514|organism=Branchiostoma lanceolatum|type=mRNA|length=6805bp|location=Sequence derived from alignment at Sc0000229:44917..51721- (Branchiostoma lanceolatum)
GGGATGTATGTCAGTTATTTTGTGCTCCTAAAGTCCATTCTGCAGCGTAC
ATCGGAACAGTCCCTCAGTATCAGACAGGTGAGCCTTTGGAATTACCTCG
AGCTCATTCCAAGTAAATTCCACATCACCACTCTAAGTTTCAAATTTTTG
GACTTGATTCCCCTGTCAGTTGATGATAGTGATCATCATATCTTTTTAAG
TACCAAGTGTTTACATTGTTTGAGAGGGCTTCATGCTTGAAAGCAAAATG
TGCATGACTTGAATGATCTTATGAAGATATCAAGCTGTAATAAGTTACAT
GTATGTGGGGAAACTAAAGCATTGTGCATTAGAACTAGCATAGAATGATA
CTTGTACTTCAGTGTACAAGAGGTACATAAAAAGTCTCATTCTCCGTGCC
CTTTTCCCCTTCCCAGCTGGAGGAGTTTGTGCGAGACTGGCAGTCTGCTC
CCACCAGCCTGCTGAACGCCTGGTACTCTACCCACAGGGACTGGTCTCAG
CTGGTTCAACCTGCCCTCAGGTTACTGGCCGGCAAATCAAATGGTCAGTA
GCAGAGAGGCATACTGGATTTGTTATTTTACAAAATAATCATGGACTGGT
AACCATACAAAGCAGCATAATGAAATTTAAAGAAATTCTTTGAATGGTGA
ATAGTGTACAATAATTGTTTGTTTAGAATACCTGTTTTACAAAGAAATAA
TTGATCAATACAAATGTAGATGTTTCAATGATTGAATTTCTTTACACATC
CATTGTGGTACATTTGAATGTCATGAAGGCTCGTTTAATATCTTAGTGTA
TTGTAATAAATGTTGCATAGCCTAGATTTTTTCTCCACTGAACATTACAT
TTTTGCAATATCATGCTATTTCTTACTAAGTCGTGGACACCTTTCCTCCT
ACCAGCACTGCCACCATCCTTCTGCCCCTGTGTGGAGTACAGGACAGGAA
CACAGGACTGGAAATGGATAGGTCAGCCTGCTTTCAATTTGCTACTTACA
CATACAGTTACAGTACTATAAACATGTTGATTGGCAAGGGTAAGTTAGAA
AATCTTCTTTTAGATACTATAGTACTGGTAGATACATTTATGAAGGCTAG
ACATCCAGGTAAACAATATATAAAGTAAATTCAAACTCTACAACTGGGTG
AAATTCAGAGATTTACTTCCTATTAGATAGATAGGTCTGGATACATTGAA
AACTGCATATCAGCGTCTGTTTTTCTCCCCCAGGACAAGCCTCAGATTCA
GACTTGACACTGTTGTGTAAACAGTGGCTACAGGGGCTAGGACTGAACCA
GAAACAGGTCAGGCTAGATCTCATGCAAAGATTATTTTTGAAACACATCA
TCATATAAAGAGAGTACATGTATTAGATGAATAAGATATGACCTGTGTAA
GGCCTCAGAGAAGATGAAGGTAATTCAACTTAAACCTGTCGATCAAGATT
TCGTTTTATTAAATGTACAAGGCCTTCTCCAAGTTATCGTAAAGTCTTTT
AGTTCTATTCCTATGCTCAGGTTTACCTTTGAAAAATTTACACCTACTAT
GTAAAGAAGATGATTGATAACCGTATGTTATTCCTGTTGCAGGAGACAGA
TGGAAAACAGAGCTCACCTGTTCCTCCTCCAAGAATGTGAGATAATTCTT
TCTTCTGTTATTGAGAAAGTGATCAACATGAAAGATTTTAACGACATCTT
GGCAGTAACACATAGAAACCCATTGATTGTAGGTTAGGCTATATGTATTT
TTCCATGATATGAAAATTATCACACATTGTTCCTATGTGAAGATTGCACC
ATGTGAATGAATCCATGTTACTGCAGGAGAACTGACTATGTTGTGAGGCC
AAGCAATGGGCAGGAAAAAGAAGAGTTCAGGAAACAGGTACCATCTTTTG
TCTAAAATACTGCAAATACAGCAGGCTTCTTTGTTTTCGCCTATCAGTCC
TAAAAATGTCATTCATTTGAATCAGCACTATTGTTAACTATTCATATATT
CCCTAATGTTGCTAATGACCATATGTTAAGTTGTATACCACATTATGACC
ACTCATATACTAAATTGGTCAATTTCTTATCCATAGTATTTTTAGGAGAT
GTGAAAAATTTATCACACCTTGATTTGTTTCCAGGAGGAAGCCCGTTACC
AGGGACCCCACAAACCCTTCACGTACCGCATGCACGGTTACGAGGCAGTG
GTGGGACCAGTCAAGGGGGTGAAGGGAAAGGAAACCACTTTTAACAAGGC
CAGGGAACACTCTCTACTTGTGCCTGATCGGCCAGCTTGTGTCACCATTC
TCTCATTAGGTTAGTCACTAAGGTGCCATGGAAGCACATCACATTATTAT
AGTCTTTTGTTAGAATTCCAATACTAATTTTGATCACTATAGATTTGATT
GTAAATTACCAGAAAAATGACAGATGAGATTGCCTGAAAAATGATGGATT
GGATTGGAATTGTTCTGTATGAAGAGTTTTAACAAAGTTACATGATTTGT
ACTGTTATTGTTATGTACACCCTTGCCAATAATCTGATGCCCTTTTCCAG
TTCGAGATGCAGCAGCAAGGCTGCCGAATGGGGAAGGTACCAGGGCTGAG
GTACGTAAATTAATTTCAAACAGTACACAGTATGACATTAATACTGTCTG
CATTTCTTTTCCAATCTGATTCTAGTAATAGACAGACTGAGTTGAAACTC
TTACTAATCTAGCACATTGCTTGTGTCTTCACTTCAGATTTGTGAGCTGT
TGAAGGACTCTAGCTACCTGGCTAAAGATGCAACCGACTCACAGGTAACT
GTTCTGTCCCTGTTGGGTTAATCAGGGGATGTCACATAGCTTGGCAATGG
GTGATAGTCATACATTACAGTCATTCACAGACCTAATTGTGCACGTACAT
GTAAATTACAGATCAATGCTGTCGTGAGTGGAGCCTTAGATCGACTCCAT
TATGAGAAGGACCCCTGTGTAAAGTACGACCCCATCAGGAAGGTGTGGAT
CTACCTGCACAGGAACAGGACAGAGGAGGATTTCAGTAAGTTATAAAGAG
ATTATGCATCATAATGTGCTGGTTGTATCACAGCCCCAGTATGCATATTT
GATGTTAATTCTCTCACTGCAATCCCTTTTGCCAGTTTAACACCAGTATC
AAACATGTACTATATGTTGCTTCTTTCAGCATTAAAACTATCCCCTCGTA
AATTGTATCTCATAGCAGCAGCTATGTCTTATTATTCACTTCAATACATT
CTTTAAAAAATGACAAACAATTACAAATTGCTGTGCCCTGATTTCTGCTC
CTTCTACATTATACTTCAGTGCGAATCCATGAGGTGGAAATGGAGGCAGC
CAGACAGAAGAAAGCAGCTCAACAGAAGCAGAAAGCTGCTAAGGTGTTAA
TTGTTGTCTTTTCTAGTACAAGAAGTGTTTGTATTGCCTTCCTACATTTT
ACAGTAATTGACATGCCATATTTTATGTTTACTCTGCCTTTAAATGAGAT
AGTTTTCACAGTAATTGCTTAGTACTGCGTATTATAAAATGTATTTCATA
ATGATACCAGAAGGAAATTGTTCTTGAAAATATTCTAGATGTAATGTTTT
AATTTGGGTATCGGTGACAAAGACATAAAGAAACTTTCCTGTGATTTGAA
TGTCAAATCTTGTCTAAGCTGTGCATGTGTATACACAAGATTATCACCCC
AGTGTTTTATCCTTCGCAAATGTAAGTAATGCTATTCTGAATGTCACACT
TTTCTAGAAATCCAAGCAGCCTGCCATTGTGAGCTCCACAGCCATGACTA
CATCTGCAACTGCTACTTCTACAACTGTGACAACACCTGCCAAGACAGCT
GTCAGCTCAGAGGTGACCAGGTGCAAGTCTGCACCATCCACACCTTCACC
CAAGCCTCCAGTCCTCCCACCAGGTGAGAAGAAGTAGAAAGAGCTAATAC
TAGTACATGTACTATGTTTATGGTATGTGTAGGTACATTTATACTGTGCA
AAGAGCACATCATCCTGTTGCCTTTCCCATGCATATGAAACTTGCATAAG
GTTTAAGTGCAAGAGATATGCATGTTGTAAGGTAGCAAAAGCTACAGCCA
TGTCAAAGTAGTTCTCAGTTTTTATGAGTCTTTTCGTGTCTTTCAGGCTT
CCAGAGTATCTCTCCTATACCAACATCCCTGTCCTCAAGTCAGCCAAGTT
CTCAAACAAGTTCAAGTCCAACATCAACCCTGCCAGCACCAGCTGTCCTG
AAACCTGCACTGCCGCCATCACCACTGGCTCAGGAGCCAGCCAAGAAGCC
TACCCCTCAACCCAAACCTCGAGGGTCCCTCGACCTCCAAGTCCCACGGC
TGAAGGTGGCCCAGCCTGTGCAACTGAAGGTAGCAGAGCCGCCTAGGGCA
CCCTTGACACACAGGCCCTCCACAAAGCCTGGACTGAGACTAGTAATGCC
TCCACAAGGCCTGCAGGCTGCAGAGAGTGTGCTGTCCCCTCCTGTGACAG
GAACAGGTGCCGTCATCACAAAACCACCTCGCAGCATGCTGAAGACCCCT
CCTTCATCCATGATTGGCTGCACAGGAACATCTCCACCCGTGGTGACCTC
CGTTATTGTGACTTCAGGCAAACAACAGATCCAGATCCCTGTAGTCCAGC
ATGTGCAGCAGCCCCAGGTCATATCACCTCCACCCATGCAGTCGCCCATC
AGGGCCTCCCCAACCACCCCTGTGTCCTCTGCAGGGCCCTCCCCCACAGC
CCCCATGGTTCAGAGCCCCTCAGCACAGGGCCTTAAGATAGGTGCCACTG
GGGCTGGGCTCACCTTCAGCCCAGAGGGGATTGGAATGATTCCGTCCACT
AGTGGGGCAGCTAACATCGATGTGAAGAAAGCTGGTGTGACAAGCCCTTC
TACCCAGATCCTGACCATCCCTCTTACTCAGCCAATCCAGCTCAGCCAGC
TCAGCCCAGGCCTCCTTAAGGGTGCAGCTATCACCACTCCTACTATCCTT
CGTGGCACTCTTCCTACAGCCAGTCTAGCTGGGTTAGGTAAAAGTATTGT
TCTAACTAAGATGCCAGTTGGCACTAAGATTGGGCCCATTGTCACAGGGA
AGCCCCTGAGCTTCATAACACAGCCTTTCCAGATCCAAGGACAGAGCCAG
CTGCCAGGGTTTGCCACTGTGATTGGCCAGGTGCCTGGGCTGAGTGTTCA
GGGGGCAGGACAGGGTCCTGGAACTGCTGCATCTGGTCAGGCGTCTGCAG
CAAGTGCAGCAGGACAGCCTCAGCCAGCGACACCAACCACAGCACCTGCA
GCTGTGCTGCAACAAGCACAACATATGGCTGCAGCAGGGCAGCTCCAGGC
ACAGTCTCCTTCAGCATCAGGGCAGCCTTCTGCCCTCCCTACACCCACCC
TCCAGGCACAGACCCTGGCATCACTGGGACAGCCCAGAAGTGGTGCCCAG
CATCCAGCAGTTTCAATAACTGGACATCCCTTTTCCCGCGCCACTCCAAC
TTTTCTACCCTCGGCAGTGGCACAGTCTCTCGGAATTATAACAACGCTCC
CTCCAAACTTAGTCATGACCAAGTCTGTCACAACCACACATCTCACACCA
GCCAAGAGCGTAGTGACAGGTGTGGCTATGTCAGCTGTACCAGGAGCAAC
AAGACCAGCTGTATCAGGTGCCACCATGACATCTGTGTCAGGTGTAGCAC
CGACATCAGCTGCCTTGAAGAGTCCTGTGGCCACTACTGTACTTAGGGCT
CAGCCTGCAACAGTGGCAACAGCCAGAAGTCAGGCTCAGCAGAAATTACA
GGAAAAGATTTTGAGCCAACTTAAAGCTTCTCAGTCACATGACCAGTTAG
AGAAGAAATAAATCCCTGGAACTGGGGTTCCAATTAGCTTACTTTATTTC
TTGAGGAATTCAATATCATGCAAGCAAAGTGTACTAGTATTTTAATAGAT
TCAGATCAAACTTTTGATTTTCTTTCCTTGAAAGACACTGTCTGTTAAAG
TGCCAAAGTGATATGAACACATTTACAAGATTTGTGTTAGATTTCATTTT
AGTCAGACTTGCTTTTTTGTTATGAAAATGTATGCAGCTGTACTATATCC
TATGAAACACAGTTGTGCTTAATGTTGACACGTGCATGACTTGGATGGTA
GGAGAACATTGGAATTATTTCTCATCAGGAGGAAGAAAATTGTTGTACAA
TTTCAACTCGGCACTATTCACTGATGCTTTACATGCAATGCCAATTTCCA
CTTCTCCTCGCTACCTGTATAGAAATTGTAGTCAATGCTACTGATATAGA
TGTCCATGTGAGGCAAAATGTACAAGTTGATACTGGCATATTTACCCCAT
AAGCATCAATTGGATCAAGGAAAATTTTGTGGAATGAAGACTAGTACAAG
GTATAATCTACATGCACATATGGAGGCTACCTTGATATTTGGGGTAATTC
CAATATTCATTAGAAGAGCAAACGACTATGACATTTGCAAGTATTACTTT
ATATGTATATGTGGACAACATATACATTACTTAATTGCTTGTCCCAAATT
ACCAAAAAGGTATCTATCCATTGCAAACATGTAAGGATTGTAATGGATTT
GAGCTTACAGCTACTTATTTTTTGGAAATAGATGTAACAAAAAGAGAACT
TTAAAGAATCATTCATCACGCACTCAATGTTAGCTTGTTGTCAAATTACT
CTACTATAGGCTTTGATAGCTGTATGTTAGCATTACAGACTATTGTGTTA
ATGATGATGAATAAAAGTAAAAGAAATGTATCATGATAGATACAAAAGTA
AATGA Coding sequence (CDS) from alignment at Sc0000229:44917..51721- >BlTCONS00113514 ID=BlTCONS00113514|Name=BlTCONS00113514|organism=Branchiostoma lanceolatum|type=CDS|length=1947bp|location=Sequence derived from alignment at Sc0000229:44917..51721- (Branchiostoma lanceolatum)
ATGAGGTGGAAATGGAGGCAGCCAGACAGAAGAAAGCAGCTCAACAGAAG
CAGAAAGCTGCTAAGGAAATCCAAGCAGCCTGCCATTGTGAGCTCCACAG
CCATGACTACATCTGCAACTGCTACTTCTACAACTGTGACAACACCTGCC
AAGACAGCTGTCAGCTCAGAGGTGACCAGGTGCAAGTCTGCACCATCCAC
ACCTTCACCCAAGCCTCCAGTCCTCCCACCAGGCTTCCAGAGTATCTCTC
CTATACCAACATCCCTGTCCTCAAGTCAGCCAAGTTCTCAAACAAGTTCA
AGTCCAACATCAACCCTGCCAGCACCAGCTGTCCTGAAACCTGCACTGCC
GCCATCACCACTGGCTCAGGAGCCAGCCAAGAAGCCTACCCCTCAACCCA
AACCTCGAGGGTCCCTCGACCTCCAAGTCCCACGGCTGAAGGTGGCCCAG
CCTGTGCAACTGAAGGTAGCAGAGCCGCCTAGGGCACCCTTGACACACAG
GCCCTCCACAAAGCCTGGACTGAGACTAGTAATGCCTCCACAAGGCCTGC
AGGCTGCAGAGAGTGTGCTGTCCCCTCCTGTGACAGGAACAGGTGCCGTC
ATCACAAAACCACCTCGCAGCATGCTGAAGACCCCTCCTTCATCCATGAT
TGGCTGCACAGGAACATCTCCACCCGTGGTGACCTCCGTTATTGTGACTT
CAGGCAAACAACAGATCCAGATCCCTGTAGTCCAGCATGTGCAGCAGCCC
CAGGTCATATCACCTCCACCCATGCAGTCGCCCATCAGGGCCTCCCCAAC
CACCCCTGTGTCCTCTGCAGGGCCCTCCCCCACAGCCCCCATGGTTCAGA
GCCCCTCAGCACAGGGCCTTAAGATAGGTGCCACTGGGGCTGGGCTCACC
TTCAGCCCAGAGGGGATTGGAATGATTCCGTCCACTAGTGGGGCAGCTAA
CATCGATGTGAAGAAAGCTGGTGTGACAAGCCCTTCTACCCAGATCCTGA
CCATCCCTCTTACTCAGCCAATCCAGCTCAGCCAGCTCAGCCCAGGCCTC
CTTAAGGGTGCAGCTATCACCACTCCTACTATCCTTCGTGGCACTCTTCC
TACAGCCAGTCTAGCTGGGTTAGGTAAAAGTATTGTTCTAACTAAGATGC
CAGTTGGCACTAAGATTGGGCCCATTGTCACAGGGAAGCCCCTGAGCTTC
ATAACACAGCCTTTCCAGATCCAAGGACAGAGCCAGCTGCCAGGGTTTGC
CACTGTGATTGGCCAGGTGCCTGGGCTGAGTGTTCAGGGGGCAGGACAGG
GTCCTGGAACTGCTGCATCTGGTCAGGCGTCTGCAGCAAGTGCAGCAGGA
CAGCCTCAGCCAGCGACACCAACCACAGCACCTGCAGCTGTGCTGCAACA
AGCACAACATATGGCTGCAGCAGGGCAGCTCCAGGCACAGTCTCCTTCAG
CATCAGGGCAGCCTTCTGCCCTCCCTACACCCACCCTCCAGGCACAGACC
CTGGCATCACTGGGACAGCCCAGAAGTGGTGCCCAGCATCCAGCAGTTTC
AATAACTGGACATCCCTTTTCCCGCGCCACTCCAACTTTTCTACCCTCGG
CAGTGGCACAGTCTCTCGGAATTATAACAACGCTCCCTCCAAACTTAGTC
ATGACCAAGTCTGTCACAACCACACATCTCACACCAGCCAAGAGCGTAGT
GACAGGTGTGGCTATGTCAGCTGTACCAGGAGCAACAAGACCAGCTGTAT
CAGGTGCCACCATGACATCTGTGTCAGGTGTAGCACCGACATCAGCTGCC
TTGAAGAGTCCTGTGGCCACTACTGTACTTAGGGCTCAGCCTGCAACAGT
GGCAACAGCCAGAAGTCAGGCTCAGCAGAAATTACAGGAAAAGATTTTGA
GCCAACTTAAAGCTTCTCAGTCACATGACCAGTTAGAGAAGAAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113514-exon-Sc0000229-1564993656:51644..51721 | BlTCONS00113514-exon-Sc0000229-1564993656:51644..51721 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:51179..51305 | BlTCONS00113514-exon-Sc0000229-1564993656:51179..51305 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:50751..50816 | BlTCONS00113514-exon-Sc0000229-1564993656:50751..50816 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:50415..50488 | BlTCONS00113514-exon-Sc0000229-1564993656:50415..50488 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:50086..50129 | BlTCONS00113514-exon-Sc0000229-1564993656:50086..50129 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:49835..49895 | BlTCONS00113514-exon-Sc0000229-1564993656:49835..49895 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:49413..49587 | BlTCONS00113514-exon-Sc0000229-1564993656:49413..49587 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:49122..49171 | BlTCONS00113514-exon-Sc0000229-1564993656:49122..49171 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:48928..48984 | BlTCONS00113514-exon-Sc0000229-1564993656:48928..48984 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:48687..48810 | BlTCONS00113514-exon-Sc0000229-1564993656:48687..48810 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:48328..48402 | BlTCONS00113514-exon-Sc0000229-1564993656:48328..48402 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:47799..47964 | BlTCONS00113514-exon-Sc0000229-1564993656:47799..47964 | Branchiostoma lanceolatum | exon |
| BlTCONS00113514-exon-Sc0000229-1564993656:44917..47575 | BlTCONS00113514-exon-Sc0000229-1564993656:44917..47575 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000229 | genome | Sc0000229:44917..51721 - |
Properties
| Property Name | Value |
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| GeneID | BlCUFF055697 |
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