BlTCONS00113511 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113511
Unique NameBlTCONS00113511
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000229:26023..27756-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113511 ID=BlTCONS00113511|Name=BlTCONS00113511|organism=Branchiostoma lanceolatum|type=mRNA|length=1734bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum)
GTTGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTG
ACCGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGA
ATCAGGTAAGAGCAAGTAAGCTTAATCCCCAGTTCTTTAAGGTGAGGGTT
GCACGGGGCAGAGTGGGTGAGATTTTGTATCATATTACTGCTTGTGTAAG
GTTTCCCTGATTTGGCTTTCTTTGCTTCGCTTCACAAATCGGCCATGTAA
TTAAGAGGTTTCTACTGCACTTTATTAGTATCTTAGTATAGGTATAACCT
GTTGATATCGCAGTACTTAGTATCCTTATCCATTATAGAATTTACGATTA
ACCTTCGACATATAGTTGCAAATAAATCATTTTTACTTTTAATTGTTATT
TTGAATTCAGAAAAATAGTATTTGATTAAATGTAGAACCTGTGTCTTGAG
TAGTTGACCCCTTTAAAATTCGATAATTTTGTGGTCCCGTAAAACTCGAT
CCTGTTTGTCCCTCCCTAGCCATGGGTTCTAAGAGAGTGGCCATTATAGG
AGCCGGAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGC
TGCAGCCTGTCTGTTTCGAGCAACATGAGGATCTCGGTAAGAACAAGACA
TTACACGTCCTAAAGTTCATTTCAATAGCGTTGAAGAATAAAATAGCGAA
TTCCGTTCTGACTGATATAGCTTGACAATACAAAAAGGCTTCGTGGACTA
AATTTGAATACAGTAGTATAGACTATCTTTGAGACCCCCGATAGAAGAGC
TGAAAATAGAAGGGAAGGATGTGTACATATGCGTGTGCATACGACTTTTG
AGGTACGGTAAATCATGCTCGCCTGTTATAAAATCCCTATCATTTGTATA
GTCAATAGGCCACCTGCTGCCATGCTGCTATCTTACTTTTGAAAATATGA
CTATACGTAGTCCCTGACACTGGAGGTGAATTATATTTGTTCCCTTGACT
TCTACCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACCGCTATTCC
AGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCG
CCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTC
AGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACCG
TGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAAC
ACATCCGATTCGGCACACAGGTAGGGATATCCTTGTTGAACCATGGCCAT
TGATTCTATAACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCT
TACGTTCAACGCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGA
AGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTT
ATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGTACGTACT
AACGGGGCTATAGAAACAGAAATGTTTAACACAGCAATGACTGATGATCT
CCGATAAGAGTGAAGCGTAATAAACCCAGCCGTCCACTTACGCCATCTTT
TACATGAGGCTGACGATGTGATGGTTCACCGTTCTTTGGCCCTTCGATAT
TGTTGAACTTAAAGTCCCTATGTAAGCAAACTTCTCTCAACTTTATCTCA
CGACGCTCTGTTTCCTCCCCAGGTGTGTAACGGC

Coding sequence (CDS) from alignment at Sc0000229:26023..27756-

>BlTCONS00113511 ID=BlTCONS00113511|Name=BlTCONS00113511|organism=Branchiostoma lanceolatum|type=CDS|length=561bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum)
TGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTGAC
CGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGAAT
CAGCCATGGGTTCTAAGAGAGTGGCCATTATAGGAGCCGGAGTGAGCGGA
CTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTT
CGAGCAACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCA
GGCCCAACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGT
AAAGAAATGATGTCATTCAGCGACTTCCCCTTCCCCAAGGACACGCCCCC
CTACCTGCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGC
ACTTCGACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATA
GAGAAGACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGT
ACAGACGGGTTATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCA
TGGGTGTGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113511BlTCONS00113511-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113511-exon-Sc0000229-1564993656:27652..27756BlTCONS00113511-exon-Sc0000229-1564993656:27652..27756Branchiostoma lanceolatumexon
BlTCONS00113511-exon-Sc0000229-1564993656:27121..27237BlTCONS00113511-exon-Sc0000229-1564993656:27121..27237Branchiostoma lanceolatumexon
BlTCONS00113511-exon-Sc0000229-1564993656:26487..26704BlTCONS00113511-exon-Sc0000229-1564993656:26487..26704Branchiostoma lanceolatumexon
BlTCONS00113511-exon-Sc0000229-1564993656:26265..26379BlTCONS00113511-exon-Sc0000229-1564993656:26265..26379Branchiostoma lanceolatumexon
BlTCONS00113511-exon-Sc0000229-1564993656:26023..26034BlTCONS00113511-exon-Sc0000229-1564993656:26023..26034Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000229genomeSc0000229:26023..27756 -
Properties
Property NameValue
GeneIDBlCUFF055694