BlTCONS00113445 (mRNA) - B. lanceolatum

Overview


Name	BlTCONS00113445
Unique Name	BlTCONS00113445
Type	mRNA
Organism	Branchiostoma lanceolatum (Amphioxus)

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Sequence

The following sequences are available for this feature:

mRNA from alignment at Sc0000229:1524..8511+
coding sequence from alignment at Sc0000229:1524..8511+

mRNA from alignment at Sc0000229:1524..8511+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BlTCONS00113445 ID=BlTCONS00113445|Name=BlTCONS00113445|organism=Branchiostoma lanceolatum|type=mRNA|length=6988bp|location=Sequence derived from alignment at Sc0000229:1524..8511+ (Branchiostoma lanceolatum)
CCAGTGAGTACCAACTGGAAATTAGCACCAAGAAGACCAAAGTGATGGCC
GTAGCCAAGGAACCTACTCAAGTAACAGCCACTTGCCGGGGAGAACAGCT
TCAACAGGTCCCAAGATTCAAGTACTTGGGTTCCACATTGGAACAAACAG
CCAGCTGTAGCCAAGAGATCAACATACGCCTAGGAGCAGCCCGTGCAGCC
CTCCGAAGCCTAGATGTAATCTGGAAAGACAGGGCCCTCAAGACAGCCAC
TAAACTGAAAGTGCTGAGGACTCTTGTCTGGCCTGTGGTAACCTACGGCT
GTGAGGCATGGACGTTACATGCCAGAGACATCCGCAAGATACAAGCCCTG
GAGATGAAATGCTACAGGAAGATACTGCGTATCAGCTGGACTGAACACCG
CACAAACGACTCTGTGTTAGAAGAGCTGGGAGTGGGAAGAACACTGCTTA
ACATCATAAAAAGGCGGAAACTTCAATACTTTGGGCATGTCACAAGAGCG
GGCAACATCACCACCCACATACTGCAAGGAACGATCAACGGTAGGAGGAG
CCGTGGGCGACCAAGAAGGAGGTGGGGGGACGACATCCGTGAATGGACAG
GACTCTCACTAGCGGAGTGCACCCACAGAGCCAGAGACAGGAGAAAGTGG
AGGAGGCTGATACTGGAGGCTACCATGGTCCCCGACCCTCAGGCATGAGG
ATGGGACTAGGTAAAGGTAAAAAGGTGTGTGAAGTAGGGTTACAACGATG
AACAGACTTATCTGACAGGTGTTTATGCAGCAGGACTTGTGCTGTGTCCA
TGGAAAATGTACAATAAAATTCCATAGCAATGATGGATTGACATCAAGTC
CCTGAGGTATTGATGTGTACTTAAGTAGTCATCAAGTTATGTCACAAGTA
GGGCAATTGCACGTCAACAGAAAAGGGCACAAGGAAATGGCATCGCATGA
CTACACAATAAACTTTTCTAGGAAAAAGTCCTCACCAGACTTATATCACA
TTGTGGACATTTATCTTAATGTTATAGTAATTAACAAGTCACAATTATAT
ATTGTGAACACAATTTCCTGCTCGCTATACGCAATCATATCCTTACACCA
TTAGGTAACTTACTTTACTATTGTTAACTTTGTAGTGACCTTGTCCTTTT
TTCATGGCTAGCCGTACAAGGCTAAGTTCAGAAGAGTCTATGACCCAGCA
ACATCATACAGGTTATTTTAATTTGCCTATACGACTGTCACAGGTTGAAA
CTCACAGAAAGTTACAACCATGGGGTGGACTCAACACCACTCCTGGAGAA
GACCATCGGACTGCTCCTACAGGAAACAGCAGAGAAGAACCCTGACAAGG
AGGCAGTCGTGTTCTGTGCTGAGGGCATCAGGAAAACATTCTCACAACTG
CTGCAGGAGGTGTGTGTCAATCATAGTGATATCTGTACAATAAAGCCATA
ATGCAATGATATACAGCAAAGCAGACAGGGTAAGGGGAGTAGAGTATTCT
ACAAAGTTTCAGGGAATATATACTTGACACAGTCTAACAATTTGGTGCTG
TCACTGGACAGTTAAAGCACTCAGTACATGTATAGGCCTGGAACATGTAT
GATTATATCAATACATCCAGTAAGTGACACTCGTATAGAAAACAACAAGT
TTGTTATTTTTCCATGAACCAGACTGATGCTCTAGCTGCTGGACTACTTG
CCCTTGGCTTCCAACCAGGCGACCGTCTGGCAGTCTGGTCCCCTAACCGG
TACGAGTGGGTGTTGACACAGTATGCAACTGCCAGGGTCGGCATAATACT
GGTGGCAGTCAGCCCTATGTTTGGGCCAGAGGAACTGAAGTATGCACTGA
ACAAGGTAATATTATCCACAATATGATCATAATAAAAAGCAATCACAGCA
CATCATACAAAAATTTTCAGGATTAGGCATTTCAATATTAATAACATTGT
ACATACCAATATTCCAAATGGAAATGAATTTAAATCTATAACAATCACAC
TTTTTGGATCAATTTATTGTAAATCTTCATTAATATTGTGATGCACAATT
ATACTGTAATTGTACTTCAATATAACTTGAATAAATGTTTCTACATAAGT
TGAAATGGTTCTGGTATAACTGTTGGCAGCACATATAAGTTGACTGATAA
CTTGGAACTACTCAGTTTCTCTGCCAATAATGAATTAATTACAATAAGAT
CTTTTCTTTCCTTCAGGTGCAGCCTCAGGGCATTGTGATTGCTCCAACAT
CTCCCAAGAAGGACTTTCACAAAGTGCTGATGTCTGTGGTCAACTCAGAT
GCAGGATCCTCCAGTCTTAGTCAGCTGAAGATCATCAGTATGGAAGGGGA
AACGGAGGGGTAGGCAGCTGATTGTTTGTTTGTATTGCACACCTGATGAA
CAGCCTCATGGCATAACACACCAGCTGTGTACTGAATAGTACTGGCTGCA
TACTAGTATATGGACAGATTTATTTATCCACTCGCACTGACATATGTGAT
TGTCTACTCAAAAAACTTATTGAACATCACTGTCAGGAATTCTGTGAATA
ATTCAAATTATCCTTTTTTCCATGTAACTTCAGTGATGTTCTACAGTTTG
AGGATGTCACCAAGAAAGGAGGACAACAGGAAGTGGGGAGATTGAAGCAG
CTACAGCAAACTCTCCAGCCTGACCAGCCAATACACATAGCCTTCACATC
GGTAATGTATGGATGGAAGTTTTAGCTGATAAATGTTACTGCCATTTTTC
ACATTCCTTAAACCTTGCTTCAAAATATTTTATCACATTGTATGAAAAGT
TAAGCAGTACAGTTTCTGCTCTAACAACATGTTCAAGTTCCAAAGTAGCT
GGCATCAATCACATTGTAATCCATGTTGTCATGGAGAGAATAGTCATCAC
ATTTTCACTTTCAGGGCACTACTGGGCCTCCTAAAGCACCAGCCTTCTCT
CATCGCCATGTGATCAACAACTGCTACTTCACTGGCCGCAGACTCAACTA
TCATGAGGAGGTAAATGGGAGGTTTGAAATGTTTATGAAAACAACAAATC
AATGGATTTCATCAGTAGTCACATCACACAAGTTTGGATGTTTGTTTACA
AGATGTGACATTGTTGATGCATGGATAACCATCTAAGACACTACAACAGG
TGTCAGAAGGTGTAACACACAATGTTTCCTCCAGGACCATCGCCTGTGTG
TTCCCATGCCCATCTGGCGTGCCCTGGGGATGATCGTGTGTAACCTGAAC
CCACTGGTGTTTGGCCACACTGCTGTCTACAGCGGTCCTGACTTCAATCC
TCTAGCTGTGCTGGCAGCCATTGACAAAGAGAGGTAATAATGTAAAACAC
AATGTTGTATATTGTTTTGGTAAAAATGGCACAGCATCTCTGAATAAAGC
AAGCCATTTCTGTTAAAACACCACAATGGTTCGGAATGTCACCACAGAAA
TCTATTTGACCAATGAAAGGTTTGTTTCTTTTCCATAGGTGTACATCAGT
GTATGGTAATTCTCCAATGCTAATGGCCCTACTCAAGCAGCCTACTTTTG
GAGACTATGATGTCAGCAGCTTGACAACAGGTAACAAGTCACAGTTGTTT
GTGAATGATGCACTTAAGATATGTATCAATATAAATGAATGCTTGAAATT
ATACTATTATAGGCTGCTGTGTGAGTGTGTACGTTTAGGAACTGACCATG
ATTTTGTATATTTTCCCCAGCCATGATTGGTGGCCAGGGTATCGGAGGTT
CTGACCTGCCACTGCCGATGCTGCAGTTGTTTAGACAGAAGCTGCATCTC
ACCAATGTGACGGTAATTTTTTACAAGAAAATTAAGTTGTTTATGTTCTG
GCCCGGCATCCTTCCTGTGTTTAAAGCATCTTTTATTATGTGTGTTTGTC
AAAGGAGTATTGAATTGAAGAAGTGCACAGTATCAGATATTTTTTGACTT
GAAGATTTGTTTGTTTGATCCCTTAGTTTTTTTTGAATATGTTTCTCTGT
GTGTACAGGTTGCCATGCCGATGACAGAGTGTGGCCCAGTAGCCTTCCAA
GGTGTTCTGGGAGACCCAGAGGAAAAGCTTACGTCAACTGTGGGCCGTAC
CCTCTCCCATGTGGAGGTAAGATGTTTAATGAATGATAGATGAAATGGGA
AGTGGCTTAGACCAAGATGATAGCAGATAGTAATTGTAGCAAGTTGGCAA
CCCTGAGAAACTGTAACACAAGACCAGAAGTGGTATGGAGGTGAGTGCGG
TACCCATATTATGCTGGGTTATGGGACCCAGGCAGCAATTAAGACACTAG
GCAAGGCATTATGATTATGGCATTAACCCTTGTTAGTCTATATGGAATAT
GTGGGTGAATATTGAGTTACTAGGGATATAAGAAATTACTGCATTGTAAA
TGTTGCTGCTGTCTTTACAAAACAAGTTACATTGTTTTTACTGGAATGCC
TTCCAGGTGAAAGTTGTTGATGAAGCTGGCTGCACCGTTCCTGTGAACAC
TCCAGGGCACTTCCTCACCCGTGGGTACTACATCATGCTCCAGTACTGGG
GTGATCAGGAGAAGACAGACAAGGCTTTCACTGCAGATGGCTGGTTCCAG
ACCGGGTGAGTTGGAAAGATTTATCACAATTAAGGGAGCAAATTCTCTGT
AGCTTTAATGAAGGATTGCAACAGTTAAAGATTTAACAGTTTCAAAATAT
TTGTTCTTCAAAACACCATTTTTTATGTAATTGAAAGAATCAAGATGAAG
ACTTAGTGTATTATTACTATGGGAAGACCCATATTCAGATATTTTACTGG
GGTTTTAATGAATGAAGCTGTTTTTTTTTCCACTCATCAGGGACTTTATA
TCTATGGATGAGGATGGGTATGTTCAGCTGCTTGGGAGGGAGTCCGAACG
TATCAAAGTCGGAGACAGCTACATCTTCCCTAAAGAAGTAGAGAATGTCT
TGAGGTCCCACAAACAAGTCAAGGATGGACAGGTAAGACCAACTCAGATA
CTGCAAGCTAAGAGTGTAAATTCAGTCAGTTATAAGAAATTTAAGGGCCT
TCTTAGTTACAGGCAACTTAGTTCAAAATTCTTCTTTTACGGAAGTGTTG
ATCTAAGCTACCCTAGACCAGGTACTTAATTGATTGGAAAGGTGGCACTA
TCAGCAAAATGCTGTTAAACATCATGTACGGGACAATTGGTCTACAATAA
AATGAACAATGCATGCTCCTGCTAGGCATTCAACTTATCTTTTTTGTTTG
AATGTGTTTTCAGATAGTAGAGTTGTCTGTTTCTGGAGAAACCAAGCTGT
GTGCCTGTGTTGTACTGGAGAGTGGAGCATCACTATCCGAAACAGACGTT
TTGGATTTCTGCAAGGATAAGGTAATGTCAATACTATTAGTCATCTTTTT
AATTCTAGGTGACAAGATTGTAGATCGTATAAAGATGAAGAAAACTCACA
GATATTATCAGATCACATAAAGTTCCTGTGCATTATTTTTATTTCATCTA
TCATTAAAGGCAAGTGATATTAGATAACTGAATCTCCATGTAGCAGGAAA
AGCCTTTTTATGCTATATTAAATTGGCTTGCAAATTCATGTATCTACAAG
ACTACCAGAGTGAGTGAACAAATTAACTGAAATGTAACTCCAGGTTTCTT
TTTTGTCATAACCAGCTGCCGGCTTTCCAAGTACCACAGTTTGTGTGTTT
CTTTGACACTTTCCCCCTGACTCCTACAAAAAAGGTCAGTACTCATGATG
CAAGCTTGATGTTTTTACATGAGATTACTTTTAAGCAGATTATCTCTGTC
TGTTTCCTTGATATGTAATCTTTTGTATACTACATAGCTTGACAACAATT
ACAGAAGGTGCTGCAGATGCATGTACTCTTCCCAAAGGTTGATGACCTGG
CATCTACATGTTTACTTAACTACTATCAGTTCTTATATTCAATGACTAGC
CATGTAGCAGATACATATTGTACTGTATAGGGGCCATTACAAATTCACAC
CATTCCAGCATATGCCATTGATACTTTTCAGACCTTCTTTCTCTTCAGTC
TTTTGATACACAGTGAATAAGAAAGCAATTATTATTTTGTTATCGGAAAC
AAGAATAGAAAAGTGAAAAAAACATTGAATGCCTCTTTGTCATTACAGGT
TAAGAAGTCGGAAGTGAAGCTGGAGGCTGAAAGGAAGTTAAAGCTGTCCT
AGAGCAACTGGTCTTCCAGAGGAGTCTGATACAAGTTCAGTAAGGGTACA
ACAATTATCAATTGTGGAACATGGTGTGGAAATATTTACTTTTATCTAAC
TATAGGTGATTACTGCATGACAGGATGGAGTCATCTCTTGCCCTACATGT
ATGTCACAGGGGCATTTTTCAATTCTAAGAAGAACCTGTGCATAATATTA
TAATTTGTTATGCCTTCAATATCAACAAAATTATTTTAAGTCAACAAATT
TCAATGGAAAATTTTTTTAAAGTTTCTCAACATTTCTAAAATATCTTTTT
CTAAATTTCTTAGTAATTTTAAGAGATACCATTGTTTACATGACACACAG
TTAGTTGTGCTTCAAATGGGTGTTTCAAAAGTAGAAGTTACATATAACAT
CCTGCCTCAGTACGTTGCGAGACACTCATATTGCTACAATGCTGTATATT
GTACATGGACCAAATGCCTCCCATGATCAAATGTAAANCTCCCATGCATG
ATCAAATGTAAAGTGTAACCTTTGTATTGTTATGTACACGAATCTAGATA
CGATTTTCCTCATGAATGGTGTGGTTAGAAGATAAAAAATCAACTTGTTT
TTGAGTGTACACTGTAGGAAATGGCAAATGCAAACTTATCTGTTCAGAAA
ACTTATTGAATTACATGAGAAATGATATCTGAAACAATTGCACAAAGGTT
GTAGGGAAATATAGAAAAACTGTAGAGAAAATTTTGGCAGAAATGAATGT
TAACATAGTTTATGGTGATTAAAGTGCTTCAGTCGAAC

Coding sequence (CDS) from alignment at Sc0000229:1524..8511+

>BlTCONS00113445 ID=BlTCONS00113445|Name=BlTCONS00113445|organism=Branchiostoma lanceolatum|type=CDS|length=720bp|location=Sequence derived from alignment at Sc0000229:1524..8511+ (Branchiostoma lanceolatum)
ATGATTGGTGGCCAGGGTATCGGAGGTTCTGACCTGCCACTGCCGATGCT
GCAGTTGTTTAGACAGAAGCTGCATCTCACCAATGTGACGGTTGCCATGC
CGATGACAGAGTGTGGCCCAGTAGCCTTCCAAGGTGTTCTGGGAGACCCA
GAGGAAAAGCTTACGTCAACTGTGGGCCGTACCCTCTCCCATGTGGAGGT
GAAAGTTGTTGATGAAGCTGGCTGCACCGTTCCTGTGAACACTCCAGGGC
ACTTCCTCACCCGTGGGTACTACATCATGCTCCAGTACTGGGGTGATCAG
GAGAAGACAGACAAGGCTTTCACTGCAGATGGCTGGTTCCAGACCGGGGA
CTTTATATCTATGGATGAGGATGGGTATGTTCAGCTGCTTGGGAGGGAGT
CCGAACGTATCAAAGTCGGAGACAGCTACATCTTCCCTAAAGAAGTAGAG
AATGTCTTGAGGTCCCACAAACAAGTCAAGGATGGACAGATAGTAGAGTT
GTCTGTTTCTGGAGAAACCAAGCTGTGTGCCTGTGTTGTACTGGAGAGTG
GAGCATCACTATCCGAAACAGACGTTTTGGATTTCTGCAAGGATAAGCTG
CCGGCTTTCCAAGTACCACAGTTTGTGTGTTTCTTTGACACTTTCCCCCT
GACTCCTACAAAAAAGGTTAAGAAGTCGGAAGTGAAGCTGGAGGCTGAAA
GGAAGTTAAAGCTGTCCTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
BlTCONS00113445	BlTCONS00113445-protein	Branchiostoma lanceolatum	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
BlTCONS00113445-exon-Sc0000229-1564993656:1524..2932	BlTCONS00113445-exon-Sc0000229-1564993656:1524..2932	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:3196..3378	BlTCONS00113445-exon-Sc0000229-1564993656:3196..3378	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:3740..3882	BlTCONS00113445-exon-Sc0000229-1564993656:3740..3882	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:4107..4224	BlTCONS00113445-exon-Sc0000229-1564993656:4107..4224	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:4438..4533	BlTCONS00113445-exon-Sc0000229-1564993656:4438..4533	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:4708..4856	BlTCONS00113445-exon-Sc0000229-1564993656:4708..4856	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:5012..5103	BlTCONS00113445-exon-Sc0000229-1564993656:5012..5103	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:5242..5335	BlTCONS00113445-exon-Sc0000229-1564993656:5242..5335	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:5532..5639	BlTCONS00113445-exon-Sc0000229-1564993656:5532..5639	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:5980..6128	BlTCONS00113445-exon-Sc0000229-1564993656:5980..6128	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:6364..6505	BlTCONS00113445-exon-Sc0000229-1564993656:6364..6505	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:6787..6894	BlTCONS00113445-exon-Sc0000229-1564993656:6787..6894	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:7189..7257	BlTCONS00113445-exon-Sc0000229-1564993656:7189..7257	Branchiostoma lanceolatum	exon
BlTCONS00113445-exon-Sc0000229-1564993656:7672..8511	BlTCONS00113445-exon-Sc0000229-1564993656:7672..8511	Branchiostoma lanceolatum	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Sc0000229	genome	Sc0000229:1524..8511 +

Properties


Property Name	Value
GeneID	BlCUFF055670

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BlTCONS00113445 (mRNA) - B. lanceolatum