BlTCONS00113443 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113443
Unique NameBlTCONS00113443
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000229:1524..8511+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113443 ID=BlTCONS00113443|Name=BlTCONS00113443|organism=Branchiostoma lanceolatum|type=mRNA|length=6988bp|location=Sequence derived from alignment at Sc0000229:1524..8511+ (Branchiostoma lanceolatum)
CCAGTGAGTACCAACTGGAAATTAGCACCAAGAAGACCAAAGTGATGGCC
GTAGCCAAGGAACCTACTCAAGTAACAGCCACTTGCCGGGGAGAACAGCT
TCAACAGGTCCCAAGATTCAAGTACTTGGGTTCCACATTGGAACAAACAG
CCAGCTGTAGCCAAGAGATCAACATACGCCTAGGAGCAGCCCGTGCAGCC
CTCCGAAGCCTAGATGTAATCTGGAAAGACAGGGCCCTCAAGACAGCCAC
TAAACTGAAAGTGCTGAGGACTCTTGTCTGGCCTGTGGTAACCTACGGCT
GTGAGGCATGGACGTTACATGCCAGAGACATCCGCAAGATACAAGCCCTG
GAGATGAAATGCTACAGGAAGATACTGCGTATCAGCTGGACTGAACACCG
CACAAACGACTCTGTGTTAGAAGAGCTGGGAGTGGGAAGAACACTGCTTA
ACATCATAAAAAGGCGGAAACTTCAATACTTTGGGCATGTCACAAGAGCG
GGCAACATCACCACCCACATACTGCAAGGAACGATCAACGGTAGGAGGAG
CCGTGGGCGACCAAGAAGGAGGTGGGGGGACGACATCCGTGAATGGACAG
GACTCTCACTAGCGGAGTGCACCCACAGAGCCAGAGACAGGAGAAAGTGG
AGGAGGCTGATACTGGAGGCTACCATGGTCCCCGACCCTCAGGCATGAGG
ATGGGACTAGGTAAAGGTAAAAAGGTGTGTGAAGTAGGGTTACAACGATG
AACAGACTTATCTGACAGGTGTTTATGCAGCAGGACTTGTGCTGTGTCCA
TGGAAAATGTACAATAAAATTCCATAGCAATGATGGATTGACATCAAGTC
CCTGAGGTATTGATGTGTACTTAAGTAGTCATCAAGTTATGTCACAAGTA
GGGCAATTGCACGTCAACAGAAAAGGGCACAAGGAAATGGCATCGCATGA
CTACACAATAAACTTTTCTAGGAAAAAGTCCTCACCAGACTTATATCACA
TTGTGGACATTTATCTTAATGTTATAGTAATTAACAAGTCACAATTATAT
ATTGTGAACACAATTTCCTGCTCGCTATACGCAATCATATCCTTACACCA
TTAGGTAACTTACTTTACTATTGTTAACTTTGTAGTGACCTTGTCCTTTT
TTCATGGCTAGCCGTACAAGGCTAAGTTCAGAAGAGTCTATGACCCAGCA
ACATCATACAGGTTATTTTAATTTGCCTATACGACTGTCACAGGTTGAAA
CTCACAGAAAGTTACAACCATGGGGTGGACTCAACACCACTCCTGGAGAA
GACCATCGGACTGCTCCTACAGGAAACAGCAGAGAAGAACCCTGACAAGG
AGGCAGTCGTGTTCTGTGCTGAGGGCATCAGGAAAACATTCTCACAACTG
CTGCAGGAGGTGTGTGTCAATCATAGTGATATCTGTACAATAAAGCCATA
ATGCAATGATATACAGCAAAGCAGACAGGGTAAGGGGAGTAGAGTATTCT
ACAAAGTTTCAGGGAATATATACTTGACACAGTCTAACAATTTGGTGCTG
TCACTGGACAGTTAAAGCACTCAGTACATGTATAGGCCTGGAACATGTAT
GATTATATCAATACATCCAGTAAGTGACACTCGTATAGAAAACAACAAGT
TTGTTATTTTTCCATGAACCAGACTGATGCTCTAGCTGCTGGACTACTTG
CCCTTGGCTTCCAACCAGGCGACCGTCTGGCAGTCTGGTCCCCTAACCGG
TACGAGTGGGTGTTGACACAGTATGCAACTGCCAGGGTCGGCATAATACT
GGTGGCAGTCAGCCCTATGTTTGGGCCAGAGGAACTGAAGTATGCACTGA
ACAAGGTAATATTATCCACAATATGATCATAATAAAAAGCAATCACAGCA
CATCATACAAAAATTTTCAGGATTAGGCATTTCAATATTAATAACATTGT
ACATACCAATATTCCAAATGGAAATGAATTTAAATCTATAACAATCACAC
TTTTTGGATCAATTTATTGTAAATCTTCATTAATATTGTGATGCACAATT
ATACTGTAATTGTACTTCAATATAACTTGAATAAATGTTTCTACATAAGT
TGAAATGGTTCTGGTATAACTGTTGGCAGCACATATAAGTTGACTGATAA
CTTGGAACTACTCAGTTTCTCTGCCAATAATGAATTAATTACAATAAGAT
CTTTTCTTTCCTTCAGGTGCAGCCTCAGGGCATTGTGATTGCTCCAACAT
CTCCCAAGAAGGACTTTCACAAAGTGCTGATGTCTGTGGTCAACTCAGAT
GCAGGATCCTCCAGTCTTAGTCAGCTGAAGATCATCAGTATGGAAGGGGA
AACGGAGGGGTAGGCAGCTGATTGTTTGTTTGTATTGCACACCTGATGAA
CAGCCTCATGGCATAACACACCAGCTGTGTACTGAATAGTACTGGCTGCA
TACTAGTATATGGACAGATTTATTTATCCACTCGCACTGACATATGTGAT
TGTCTACTCAAAAAACTTATTGAACATCACTGTCAGGAATTCTGTGAATA
ATTCAAATTATCCTTTTTTCCATGTAACTTCAGTGATGTTCTACAGTTTG
AGGATGTCACCAAGAAAGGAGGACAACAGGAAGTGGGGAGATTGAAGCAG
CTACAGCAAACTCTCCAGCCTGACCAGCCAATACACATAGCCTTCACATC
GGTAATGTATGGATGGAAGTTTTAGCTGATAAATGTTACTGCCATTTTTC
ACATTCCTTAAACCTTGCTTCAAAATATTTTATCACATTGTATGAAAAGT
TAAGCAGTACAGTTTCTGCTCTAACAACATGTTCAAGTTCCAAAGTAGCT
GGCATCAATCACATTGTAATCCATGTTGTCATGGAGAGAATAGTCATCAC
ATTTTCACTTTCAGGGCACTACTGGGCCTCCTAAAGCACCAGCCTTCTCT
CATCGCCATGTGATCAACAACTGCTACTTCACTGGCCGCAGACTCAACTA
TCATGAGGAGGTAAATGGGAGGTTTGAAATGTTTATGAAAACAACAAATC
AATGGATTTCATCAGTAGTCACATCACACAAGTTTGGATGTTTGTTTACA
AGATGTGACATTGTTGATGCATGGATAACCATCTAAGACACTACAACAGG
TGTCAGAAGGTGTAACACACAATGTTTCCTCCAGGACCATCGCCTGTGTG
TTCCCATGCCCATCTGGCGTGCCCTGGGGATGATCGTGTGTAACCTGAAC
CCACTGGTGTTTGGCCACACTGCTGTCTACAGCGGTCCTGACTTCAATCC
TCTAGCTGTGCTGGCAGCCATTGACAAAGAGAGGTAATAATGTAAAACAC
AATGTTGTATATTGTTTTGGTAAAAATGGCACAGCATCTCTGAATAAAGC
AAGCCATTTCTGTTAAAACACCACAATGGTTCGGAATGTCACCACAGAAA
TCTATTTGACCAATGAAAGGTTTGTTTCTTTTCCATAGGTGTACATCAGT
GTATGGTAATTCTCCAATGCTAATGGCCCTACTCAAGCAGCCTACTTTTG
GAGACTATGATGTCAGCAGCTTGACAACAGGTAACAAGTCACAGTTGTTT
GTGAATGATGCACTTAAGATATGTATCAATATAAATGAATGCTTGAAATT
ATACTATTATAGGCTGCTGTGTGAGTGTGTACGTTTAGGAACTGACCATG
ATTTTGTATATTTTCCCCAGCCATGATTGGTGGCCAGGGTATCGGAGGTT
CTGACCTGCCACTGCCGATGCTGCAGTTGTTTAGACAGAAGCTGCATCTC
ACCAATGTGACGGTAATTTTTTACAAGAAAATTAAGTTGTTTATGTTCTG
GCCCGGCATCCTTCCTGTGTTTAAAGCATCTTTTATTATGTGTGTTTGTC
AAAGGAGTATTGAATTGAAGAAGTGCACAGTATCAGATATTTTTTGACTT
GAAGATTTGTTTGTTTGATCCCTTAGTTTTTTTTGAATATGTTTCTCTGT
GTGTACAGGTTGCCATGCCGATGACAGAGTGTGGCCCAGTAGCCTTCCAA
GGTGTTCTGGGAGACCCAGAGGAAAAGCTTACGTCAACTGTGGGCCGTAC
CCTCTCCCATGTGGAGGTAAGATGTTTAATGAATGATAGATGAAATGGGA
AGTGGCTTAGACCAAGATGATAGCAGATAGTAATTGTAGCAAGTTGGCAA
CCCTGAGAAACTGTAACACAAGACCAGAAGTGGTATGGAGGTGAGTGCGG
TACCCATATTATGCTGGGTTATGGGACCCAGGCAGCAATTAAGACACTAG
GCAAGGCATTATGATTATGGCATTAACCCTTGTTAGTCTATATGGAATAT
GTGGGTGAATATTGAGTTACTAGGGATATAAGAAATTACTGCATTGTAAA
TGTTGCTGCTGTCTTTACAAAACAAGTTACATTGTTTTTACTGGAATGCC
TTCCAGGTGAAAGTTGTTGATGAAGCTGGCTGCACCGTTCCTGTGAACAC
TCCAGGGCACTTCCTCACCCGTGGGTACTACATCATGCTCCAGTACTGGG
GTGATCAGGAGAAGACAGACAAGGCTTTCACTGCAGATGGCTGGTTCCAG
ACCGGGTGAGTTGGAAAGATTTATCACAATTAAGGGAGCAAATTCTCTGT
AGCTTTAATGAAGGATTGCAACAGTTAAAGATTTAACAGTTTCAAAATAT
TTGTTCTTCAAAACACCATTTTTTATGTAATTGAAAGAATCAAGATGAAG
ACTTAGTGTATTATTACTATGGGAAGACCCATATTCAGATATTTTACTGG
GGTTTTAATGAATGAAGCTGTTTTTTTTTCCACTCATCAGGGACTTTATA
TCTATGGATGAGGATGGGTATGTTCAGCTGCTTGGGAGGGAGTCCGAACG
TATCAAAGTCGGAGACAGCTACATCTTCCCTAAAGAAGTAGAGAATGTCT
TGAGGTCCCACAAACAAGTCAAGGATGGACAGGTAAGACCAACTCAGATA
CTGCAAGCTAAGAGTGTAAATTCAGTCAGTTATAAGAAATTTAAGGGCCT
TCTTAGTTACAGGCAACTTAGTTCAAAATTCTTCTTTTACGGAAGTGTTG
ATCTAAGCTACCCTAGACCAGGTACTTAATTGATTGGAAAGGTGGCACTA
TCAGCAAAATGCTGTTAAACATCATGTACGGGACAATTGGTCTACAATAA
AATGAACAATGCATGCTCCTGCTAGGCATTCAACTTATCTTTTTTGTTTG
AATGTGTTTTCAGATAGTAGAGTTGTCTGTTTCTGGAGAAACCAAGCTGT
GTGCCTGTGTTGTACTGGAGAGTGGAGCATCACTATCCGAAACAGACGTT
TTGGATTTCTGCAAGGATAAGGTAATGTCAATACTATTAGTCATCTTTTT
AATTCTAGGTGACAAGATTGTAGATCGTATAAAGATGAAGAAAACTCACA
GATATTATCAGATCACATAAAGTTCCTGTGCATTATTTTTATTTCATCTA
TCATTAAAGGCAAGTGATATTAGATAACTGAATCTCCATGTAGCAGGAAA
AGCCTTTTTATGCTATATTAAATTGGCTTGCAAATTCATGTATCTACAAG
ACTACCAGAGTGAGTGAACAAATTAACTGAAATGTAACTCCAGGTTTCTT
TTTTGTCATAACCAGCTGCCGGCTTTCCAAGTACCACAGTTTGTGTGTTT
CTTTGACACTTTCCCCCTGACTCCTACAAAAAAGGTCAGTACTCATGATG
CAAGCTTGATGTTTTTACATGAGATTACTTTTAAGCAGATTATCTCTGTC
TGTTTCCTTGATATGTAATCTTTTGTATACTACATAGCTTGACAACAATT
ACAGAAGGTGCTGCAGATGCATGTACTCTTCCCAAAGGTTGATGACCTGG
CATCTACATGTTTACTTAACTACTATCAGTTCTTATATTCAATGACTAGC
CATGTAGCAGATACATATTGTACTGTATAGGGGCCATTACAAATTCACAC
CATTCCAGCATATGCCATTGATACTTTTCAGACCTTCTTTCTCTTCAGTC
TTTTGATACACAGTGAATAAGAAAGCAATTATTATTTTGTTATCGGAAAC
AAGAATAGAAAAGTGAAAAAAACATTGAATGCCTCTTTGTCATTACAGGT
TAAGAAGTCGGAAGTGAAGCTGGAGGCTGAAAGGAAGTTAAAGCTGTCCT
AGAGCAACTGGTCTTCCAGAGGAGTCTGATACAAGTTCAGTAAGGGTACA
ACAATTATCAATTGTGGAACATGGTGTGGAAATATTTACTTTTATCTAAC
TATAGGTGATTACTGCATGACAGGATGGAGTCATCTCTTGCCCTACATGT
ATGTCACAGGGGCATTTTTCAATTCTAAGAAGAACCTGTGCATAATATTA
TAATTTGTTATGCCTTCAATATCAACAAAATTATTTTAAGTCAACAAATT
TCAATGGAAAATTTTTTTAAAGTTTCTCAACATTTCTAAAATATCTTTTT
CTAAATTTCTTAGTAATTTTAAGAGATACCATTGTTTACATGACACACAG
TTAGTTGTGCTTCAAATGGGTGTTTCAAAAGTAGAAGTTACATATAACAT
CCTGCCTCAGTACGTTGCGAGACACTCATATTGCTACAATGCTGTATATT
GTACATGGACCAAATGCCTCCCATGATCAAATGTAAANCTCCCATGCATG
ATCAAATGTAAAGTGTAACCTTTGTATTGTTATGTACACGAATCTAGATA
CGATTTTCCTCATGAATGGTGTGGTTAGAAGATAAAAAATCAACTTGTTT
TTGAGTGTACACTGTAGGAAATGGCAAATGCAAACTTATCTGTTCAGAAA
ACTTATTGAATTACATGAGAAATGATATCTGAAACAATTGCACAAAGGTT
GTAGGGAAATATAGAAAAACTGTAGAGAAAATTTTGGCAGAAATGAATGT
TAACATAGTTTATGGTGATTAAAGTGCTTCAGTCGAAC

Coding sequence (CDS) from alignment at Sc0000229:1524..8511+

>BlTCONS00113443 ID=BlTCONS00113443|Name=BlTCONS00113443|organism=Branchiostoma lanceolatum|type=CDS|length=1359bp|location=Sequence derived from alignment at Sc0000229:1524..8511+ (Branchiostoma lanceolatum)
ATGTTTGGGCCAGAGGAACTGAAGTATGCACTGAACAAGGTGCAGCCTCA
GGGCATTGTGATTGCTCCAACATCTCCCAAGAAGGACTTTCACAAAGTGC
TGATGTCTGTGGTCAACTCAGATGCAGGATCCTCCAGTCTTAGTCAGCTG
AAGATCATCAGTATGGAAGGGGAAACGGAGGGTGATGTTCTACAGTTTGA
GGATGTCACCAAGAAAGGAGGACAACAGGAAGTGGGGAGATTGAAGCAGC
TACAGCAAACTCTCCAGCCTGACCAGCCAATACACATAGCCTTCACATCG
GGCACTACTGGGCCTCCTAAAGCACCAGCCTTCTCTCATCGCCATGTGAT
CAACAACTGCTACTTCACTGGCCGCAGACTCAACTATCATGAGGAGGACC
ATCGCCTGTGTGTTCCCATGCCCATCTGGCGTGCCCTGGGGATGATCGTG
TGTAACCTGAACCCACTGGTGTTTGGCCACACTGCTGTCTACAGCGGTCC
TGACTTCAATCCTCTAGCTGTGCTGGCAGCCATTGACAAAGAGAGGTGTA
CATCAGTGTATGGTAATTCTCCAATGCTAATGGCCCTACTCAAGCAGCCT
ACTTTTGGAGACTATGATGTCAGCAGCTTGACAACAGCCATGATTGGTGG
CCAGGGTATCGGAGGTTCTGACCTGCCACTGCCGATGCTGCAGTTGTTTA
GACAGAAGCTGCATCTCACCAATGTGACGGTTGCCATGCCGATGACAGAG
TGTGGCCCAGTAGCCTTCCAAGGTGTTCTGGGAGACCCAGAGGAAAAGCT
TACGTCAACTGTGGGCCGTACCCTCTCCCATGTGGAGGTGAAAGTTGTTG
ATGAAGCTGGCTGCACCGTTCCTGTGAACACTCCAGGGCACTTCCTCACC
CGTGGGTACTACATCATGCTCCAGTACTGGGGTGATCAGGAGAAGACAGA
CAAGGCTTTCACTGCAGATGGCTGGTTCCAGACCGGGGACTTTATATCTA
TGGATGAGGATGGGTATGTTCAGCTGCTTGGGAGGGAGTCCGAACGTATC
AAAGTCGGAGACAGCTACATCTTCCCTAAAGAAGTAGAGAATGTCTTGAG
GTCCCACAAACAAGTCAAGGATGGACAGATAGTAGAGTTGTCTGTTTCTG
GAGAAACCAAGCTGTGTGCCTGTGTTGTACTGGAGAGTGGAGCATCACTA
TCCGAAACAGACGTTTTGGATTTCTGCAAGGATAAGCTGCCGGCTTTCCA
AGTACCACAGTTTGTGTGTTTCTTTGACACTTTCCCCCTGACTCCTACAA
AAAAGGTTAAGAAGTCGGAAGTGAAGCTGGAGGCTGAAAGGAAGTTAAAG
CTGTCCTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113443-exon-Sc0000229-1564993656:1524..2932BlTCONS00113443-exon-Sc0000229-1564993656:1524..2932Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:3196..3378BlTCONS00113443-exon-Sc0000229-1564993656:3196..3378Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:3740..3882BlTCONS00113443-exon-Sc0000229-1564993656:3740..3882Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:4107..4224BlTCONS00113443-exon-Sc0000229-1564993656:4107..4224Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:4438..4533BlTCONS00113443-exon-Sc0000229-1564993656:4438..4533Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:4708..4856BlTCONS00113443-exon-Sc0000229-1564993656:4708..4856Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:5012..5103BlTCONS00113443-exon-Sc0000229-1564993656:5012..5103Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:5244..5335BlTCONS00113443-exon-Sc0000229-1564993656:5244..5335Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:5532..5639BlTCONS00113443-exon-Sc0000229-1564993656:5532..5639Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:5980..6128BlTCONS00113443-exon-Sc0000229-1564993656:5980..6128Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:6364..6505BlTCONS00113443-exon-Sc0000229-1564993656:6364..6505Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:6787..6894BlTCONS00113443-exon-Sc0000229-1564993656:6787..6894Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:7189..7257BlTCONS00113443-exon-Sc0000229-1564993656:7189..7257Branchiostoma lanceolatumexon
BlTCONS00113443-exon-Sc0000229-1564993656:7672..8511BlTCONS00113443-exon-Sc0000229-1564993656:7672..8511Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113443BlTCONS00113443-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000229genomeSc0000229:1524..8511 +
Properties
Property NameValue
GeneIDBlCUFF055670