BlTCONS00113424 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113424
Unique NameBlTCONS00113424
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000228:218610..222509-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113424 ID=BlTCONS00113424|Name=BlTCONS00113424|organism=Branchiostoma lanceolatum|type=mRNA|length=3900bp|location=Sequence derived from alignment at Sc0000228:218610..222509- (Branchiostoma lanceolatum)
CCATCTTGGTGCAAGGTTTCTGCGCTCCAAGTCCCACAAAAGAGAAGGAT
TTTCCAGGTATGTGAGGGCTTTCTATGACCCTGAAATTTCGCTTCAGTTA
GGTTAGATATAGATCTAAATGTAGTAACTACTATAGCATGTTCGTGTGCA
AAAATAACCGAACTGAGAGCTTACATGTAGCGCGCACACAGAGAAATCTG
TTAATTTGCATACAGCTGTTTACATTTGAGCCGTTTCCAGCTGTGCGTTC
TTTTCATTAATTAAAGCGTTTTAGTGTAGACAATATATCGAATATACACG
CATGCTATTGCATTTTAGATTATTTTTTTGTAGATAGAAGCCTCGTAAAT
TGTGAAATTCCTCAGTTCATTGTTTGTTGCTTGTAGCTCTATTCAGCCTA
GAGGTCGTTGACCTGTCAATGACGTCACATCCTGGTGACTCACCTGCGTC
ACAACTACAATAGTCACACCTGGGTCACGAGACTGTTTGTCCGTTCCTTA
TTGGTACACATACGTAATGCCTTCCCCCAGGACAATGTTGTATAAGGAGG
CGGTGCTGCGCATTTTGGCTAGCAGTCCAGTCGTTCTAGTTTCCGCTGAC
GAGTCGCCATTTTGATTTTTTTTCGTGTATCTTTTATTCAGATCTTAACC
GCAAAACTGGGGAACGTAAACAAGCCACAAGAGAAGATGTCCAAGAAGGG
TAAGAATTTTAACTGTTGTATAAGATATCAAACTGCGTTTTGGCCACATA
TCCGAGTGGATGTTGTTGTATAACGCTGATGTTTACTTGTGTCAAGGAGG
TTCATTATGTAACAATTTCTTGGTGTGATTCTTAACTGCAGACAACAGTT
AGACTCTTAAGATCTTAATTCAAGGAACATAGTTTTCTTTAAGTGTTGTC
TTACCTAAAAAATAATCCTTGAAAACACAGCACAAATCGTTGAACATTTT
AACTGTAATACTACATTCATATATTATGTTCAGTGCAGTTTTCAAAGGTG
CATTCATGACCCATCAGTATATAAGAGAAAATGTTAATTTTTGGGTTAGA
GTTTGCGCCAATATCACCTACTAGTCTCTTACTACATTATACAGACAACA
CATTTTGATAGTTAAGTCAGACAAAGGGTTATAAGATGAACTCAACAACA
TATTGCTTTTGCTTACTACATGTAGCAGTTTGTATGGCATCACCCCGCCC
CATGTCATTATCATAGTGCTAGTGTATGGCAGTGTTAAAGTTTAACACCA
GCTGATTGTATCAAAATATTACAGATATATGTACTAGTATGTAAGCCTAT
GTTTTTTTAGTAGAATTTTAAGATTTATTTGCATTTCTAGTTTGTACCTT
GTAGTTGACCGTATGAACATTGTTGAACAATTTCCTGTGTCAAGTCAACT
GAGCTTTTGTTTTAAGGAGCATATTTCTGTTTCTTGCAGCGCCTTACCCA
CCCCAGCAGCCTTACCCCACCCAGAACCAGGCCGCCATGGCTGGACAACC
CCCACAGGTACCGGGGGCACCACCACCATACATGGCTGTAAGTAACATTT
TCTCTGTGGAACTTACTGTAGATTCCTTTGTTCTTGTGAGGACTTGATTC
TGCAGTAAAATGCAAAAGTGTTTTAAGTTCACGGTTGAAGCAGTTCTTTA
GTTCAGTTGCAATACATAAGAAATGCATATTCACGGTGTCATGAATTTGC
GGTGGAGAGGTCACATGAAAAATAAAACTACCGCAAACATTTTAAGATTT
ACGGTATGTCTATATCCATGTCTGCAAACCTAATGTGTTATGCCGAAGGG
CCATACATTTTGGACCTTATAAATACAAATACAGACAGATATCTACCAGT
TGTAATGTCAGTATGAAGAAGAAATGCCATGTAAGACTGGCATATCCTCA
AGTACACATAAAAATCTTTCAACATGATGCACATGGCAAACAATACAAAG
ACTGGATGACTAGAACTGCACATGTCTTGTGTTATGTTGATTTAGCACTG
TTTCAAATTCATGTATCAAAATGACTCCCTCACTGGTAATATGTAAACAT
ACAGATATATAACATGTATTCCAAAGCCTGTAGCAAAGTCATTAAACTTA
AAGCTGGCTCATTTGTGATGCACACATACAAAGCCTTGACTTCAGTTCAG
TACCGGTAGTCACTTTTCCTCTTCACTTTTATCCACCAGCATCCGCAGGC
ACAAGGACAAGCCCCCCCACCTTATTACACCTACCAGCAGCAGCCCACGC
AGTTTGGAGGAGCGCCCCCTATGCAGCAGCAGTACGGCCAGCAGCCGGTG
CAGGTGGCCATGCAGGTCCCGTACTACGCGCCAGGGAGCACTGTTCACGC
GCAGAATGCCTTCGACTCTGGAGCCAGATTCAGTGCAGGAGCCACACCAA
ATATTCCTGTAAGTTTTCACCAGTGCTTTTACTAGAAACAGTATCAATCT
AACAAGTTGGTTTATGCTTCGGTCCCATATCCAAAACTGGGGCTCGGTCG
GGCTGTTTGCAAAAACGAAAGATAAAACATGCATATAAAGAAAATACACA
ATATACTGTTAGGAGTAATTCTTTTACCTTTTGTATCTTTTGTTGTCTTT
TATATCATACTTTTCCTTCCCACAAACTATCCGGCCGGGCCCCGGATTGG
AAATGGGACCGAAGCATTAGATTTAGATGTGCCTCTTGGGTTAAGATTTA
ACCCTCTAGAATGGCCACATGGCACCAAATGAATCTGTATTGGTTTTGGC
AGCAGGGAGAAGGAAACAGAGTAAACAACTCTAACAATCTACCTGTTTGT
ATACTAGTAGTAGGAGCTTGGGCAGCGGACTAAAGCTAACAAGGCTGGAC
TAGAGGCTAGTAAAAGCCTGAGAAAGTTTGAATGATGTTAACCCTAATAG
TGACCTTAGTGGCCTTATAACATTTTATTTATTCATGGCTTATTGGCATA
CCTATAGTAGTATGTAAAGTTTCCCCGCACAATTCAGCATTTGGCTGCAG
CATGGGAGGAGCTGTACAAAAATTTAGAACTGCATAAACCATTATTCTAA
TTATTTTGTGTGATTTCCACAGCCCCCGCCACCAGGAGTGATGCCGAACC
AGGCACAGTTAGCGGCAGCACAGGGCGCCACGGTCGTCGCCACGCAGCAG
AAGCCCGACTTCTTCACCGGGGGGTCGGGAGGCGGATACAGTCTGTTCTA
AATCGACCCAGGGGAAGAGGTTTAGGAATGAAGGAAGTCGTGAAGAAAAA
TGGTGCCATCTTGTATACTTGCACCATGTAAGGAGGCAGGGATGCAACAA
CACTCTATATAACAAGAACCCCATACATACTCTCTTTACACCTTGTATTT
CAAGGGCAAAGACATTATCTGCACAATTTCTACCTGGGTACAGTAATTCC
TTTGTGATATAAACTAGATAAGGTGGTATGGTTCAAACTTCCTGTACGAC
TTTGTTTGTGGGCATGTGTGCTATCTTTTATTTCAATACATTTGAAATTT
AGTGCCAGTTTTGTCGTCTTATAATCAAATAATACTCCAGATGGAATTCT
TTTTTGAGAGTTATGATAAAGGATGAAGAATTGATGATGAAAGATAGAGT
GAAAGAGGACTGGGAATTGGAGACGATTTTTCCGTATTTGTACATAATCG
TAATAATATTAAATCTTAACCTTTGTGAAACTCTTTAAGATAGAGGTGTA
TAAACTATGACGTTAGTGCCTTTTGGTACTTCATGTCTTTCTTCATCAAA
TTGCATCCTGGAAGTGGAAGAATTTGTCCTTGTTACTGTTCTTAATTTTT
TTATTCCCATTCTTAGTATGATTCTTCGTAATTATACAGTAATTAGACTA
TAACAAAAATAATTTTGTTACTTCTAAGCCTGTCGTGGCTGTATACTATA

Coding sequence (CDS) from alignment at Sc0000228:218610..222509-

>BlTCONS00113424 ID=BlTCONS00113424|Name=BlTCONS00113424|organism=Branchiostoma lanceolatum|type=CDS|length=561bp|location=Sequence derived from alignment at Sc0000228:218610..222509- (Branchiostoma lanceolatum)
CATCTTGGTGCAAGGTTTCTGCGCTCCAAGTCCCACAAAAGAGAAGGATT
TTCCAGGATCTTAACCGCAAAACTGGGGAACGTAAACAAGCCACAAGAGA
AGATGTCCAAGAAGGCGCCTTACCCACCCCAGCAGCCTTACCCCACCCAG
AACCAGGCCGCCATGGCTGGACAACCCCCACAGGTACCGGGGGCACCACC
ACCATACATGGCTCATCCGCAGGCACAAGGACAAGCCCCCCCACCTTATT
ACACCTACCAGCAGCAGCCCACGCAGTTTGGAGGAGCGCCCCCTATGCAG
CAGCAGTACGGCCAGCAGCCGGTGCAGGTGGCCATGCAGGTCCCGTACTA
CGCGCCAGGGAGCACTGTTCACGCGCAGAATGCCTTCGACTCTGGAGCCA
GATTCAGTGCAGGAGCCACACCAAATATTCCTCCCCCGCCACCAGGAGTG
ATGCCGAACCAGGCACAGTTAGCGGCAGCACAGGGCGCCACGGTCGTCGC
CACGCAGCAGAAGCCCGACTTCTTCACCGGGGGGTCGGGAGGCGGATACA
GTCTGTTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113424BlTCONS00113424-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113424-exon-Sc0000228-1564993656:222453..222509BlTCONS00113424-exon-Sc0000228-1564993656:222453..222509Branchiostoma lanceolatumexon
BlTCONS00113424-exon-Sc0000228-1564993656:221811..221869BlTCONS00113424-exon-Sc0000228-1564993656:221811..221869Branchiostoma lanceolatumexon
BlTCONS00113424-exon-Sc0000228-1564993656:220973..221070BlTCONS00113424-exon-Sc0000228-1564993656:220973..221070Branchiostoma lanceolatumexon
BlTCONS00113424-exon-Sc0000228-1564993656:220102..220320BlTCONS00113424-exon-Sc0000228-1564993656:220102..220320Branchiostoma lanceolatumexon
BlTCONS00113424-exon-Sc0000228-1564993656:218610..219437BlTCONS00113424-exon-Sc0000228-1564993656:218610..219437Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000228genomeSc0000228:218610..222509 -
Properties
Property NameValue
GeneIDBlCUFF055659