BlTCONS00113422 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113422
Unique NameBlTCONS00113422
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000228:218610..222455-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113422 ID=BlTCONS00113422|Name=BlTCONS00113422|organism=Branchiostoma lanceolatum|type=mRNA|length=3846bp|location=Sequence derived from alignment at Sc0000228:218610..222455- (Branchiostoma lanceolatum)
CAGGTATGTGAGGGCTTTCTATGACCCTGAAATTTCGCTTCAGTTAGGTT
AGATATAGATCTAAATGTAGTAACTACTATAGCATGTTCGTGTGCAAAAA
TAACCGAACTGAGAGCTTACATGTAGCGCGCACACAGAGAAATCTGTTAA
TTTGCATACAGCTGTTTACATTTGAGCCGTTTCCAGCTGTGCGTTCTTTT
CATTAATTAAAGCGTTTTAGTGTAGACAATATATCGAATATACACGCATG
CTATTGCATTTTAGATTATTTTTTTGTAGATAGAAGCCTCGTAAATTGTG
AAATTCCTCAGTTCATTGTTTGTTGCTTGTAGCTCTATTCAGCCTAGAGG
TCGTTGACCTGTCAATGACGTCACATCCTGGTGACTCACCTGCGTCACAA
CTACAATAGTCACACCTGGGTCACGAGACTGTTTGTCCGTTCCTTATTGG
TACACATACGTAATGCCTTCCCCCAGGACAATGTTGTATAAGGAGGCGGT
GCTGCGCATTTTGGCTAGCAGTCCAGTCGTTCTAGTTTCCGCTGACGAGT
CGCCATTTTGATTTTTTTTCGTGTATCTTTTATTCAGATCTTAACCGCAA
AACTGGGGAACGTAAACAAGCCACAAGAGAAGATGTCCAAGAAGGGTAAG
AATTTTAACTGTTGTATAAGATATCAAACTGCGTTTTGGCCACATATCCG
AGTGGATGTTGTTGTATAACGCTGATGTTTACTTGTGTCAAGGAGGTTCA
TTATGTAACAATTTCTTGGTGTGATTCTTAACTGCAGACAACAGTTAGAC
TCTTAAGATCTTAATTCAAGGAACATAGTTTTCTTTAAGTGTTGTCTTAC
CTAAAAAATAATCCTTGAAAACACAGCACAAATCGTTGAACATTTTAACT
GTAATACTACATTCATATATTATGTTCAGTGCAGTTTTCAAAGGTGCATT
CATGACCCATCAGTATATAAGAGAAAATGTTAATTTTTGGGTTAGAGTTT
GCGCCAATATCACCTACTAGTCTCTTACTACATTATACAGACAACACATT
TTGATAGTTAAGTCAGACAAAGGGTTATAAGATGAACTCAACAACATATT
GCTTTTGCTTACTACATGTAGCAGTTTGTATGGCATCACCCCGCCCCATG
TCATTATCATAGTGCTAGTGTATGGCAGTGTTAAAGTTTAACACCAGCTG
ATTGTATCAAAATATTACAGATATATGTACTAGTATGTAAGCCTATGTTT
TTTTAGTAGAATTTTAAGATTTATTTGCATTTCTAGTTTGTACCTTGTAG
TTGACCGTATGAACATTGTTGAACAATTTCCTGTGTCAAGTCAACTGAGC
TTTTGTTTTAAGGAGCATATTTCTGTTTCTTGCAGCGCCTTACCCACCCC
AGCAGCCTTACCCCACCCAGAACCAGGCCGCCATGGCTGGACAACCCCCA
CAGGTACCGGGGGCACCACCACCATACATGGCTGTAAGTAACATTTTCTC
TGTGGAACTTACTGTAGATTCCTTTGTTCTTGTGAGGACTTGATTCTGCA
GTAAAATGCAAAAGTGTTTTAAGTTCACGGTTGAAGCAGTTCTTTAGTTC
AGTTGCAATACATAAGAAATGCATATTCACGGTGTCATGAATTTGCGGTG
GAGAGGTCACATGAAAAATAAAACTACCGCAAACATTTTAAGATTTACGG
TATGTCTATATCCATGTCTGCAAACCTAATGTGTTATGCCGAAGGGCCAT
ACATTTTGGACCTTATAAATACAAATACAGACAGATATCTACCAGTTGTA
ATGTCAGTATGAAGAAGAAATGCCATGTAAGACTGGCATATCCTCAAGTA
CACATAAAAATCTTTCAACATGATGCACATGGCAAACAATACAAAGACTG
GATGACTAGAACTGCACATGTCTTGTGTTATGTTGATTTAGCACTGTTTC
AAATTCATGTATCAAAATGACTCCCTCACTGGTAATATGTAAACATACAG
ATATATAACATGTATTCCAAAGCCTGTAGCAAAGTCATTAAACTTAAAGC
TGGCTCATTTGTGATGCACACATACAAAGCCTTGACTTCAGTTCAGTACC
GGTAGTCACTTTTCCTCTTCACTTTTATCCACCAGCATCCGCAGGCACAA
GGACAAGCCCCCCCACCTTATTACACCTACCAGCAGCAGCCCACGCAGTT
TGGAGGAGCGCCCCCTATGCAGCAGCAGTACGGCCAGCAGCCGGTGCAGG
TGGCCATGCAGGTCCCGTACTACGCGCCAGGGAGCACTGTTCACGCGCAG
AATGCCTTCGACTCTGGAGCCAGATTCAGTGCAGGAGCCACACCAAATAT
TCCTGTAAGTTTTCACCAGTGCTTTTACTAGAAACAGTATCAATCTAACA
AGTTGGTTTATGCTTCGGTCCCATATCCAAAACTGGGGCTCGGTCGGGCT
GTTTGCAAAAACGAAAGATAAAACATGCATATAAAGAAAATACACAATAT
ACTGTTAGGAGTAATTCTTTTACCTTTTGTATCTTTTGTTGTCTTTTATA
TCATACTTTTCCTTCCCACAAACTATCCGGCCGGGCCCCGGATTGGAAAT
GGGACCGAAGCATTAGATTTAGATGTGCCTCTTGGGTTAAGATTTAACCC
TCTAGAATGGCCACATGGCACCAAATGAATCTGTATTGGTTTTGGCAGCA
GGGAGAAGGAAACAGAGTAAACAACTCTAACAATCTACCTGTTTGTATAC
TAGTAGTAGGAGCTTGGGCAGCGGACTAAAGCTAACAAGGCTGGACTAGA
GGCTAGTAAAAGCCTGAGAAAGTTTGAATGATGTTAACCCTAATAGTGAC
CTTAGTGGCCTTATAACATTTTATTTATTCATGGCTTATTGGCATACCTA
TAGTAGTATGTAAAGTTTCCCCGCACAATTCAGCATTTGGCTGCAGCATG
GGAGGAGCTGTACAAAAATTTAGAACTGCATAAACCATTATTCTAATTAT
TTTGTGTGATTTCCACAGCCCCCGCCACCAGGAGTGATGCCGAACCAGGC
ACAGTTAGCGGCAGCACAGGGCGCCACGGTCGTCGCCACGCAGCAGAAGC
CCGACTTCTTCACCGGGGGGTCGGGAGGCGGATACAGTCTGTTCTAAATC
GACCCAGGGGAAGAGGTTTAGGAATGAAGGAAGTCGTGAAGAAAAATGGT
GCCATCTTGTATACTTGCACCATGTAAGGAGGCAGGGATGCAACAACACT
CTATATAACAAGAACCCCATACATACTCTCTTTACACCTTGTATTTCAAG
GGCAAAGACATTATCTGCACAATTTCTACCTGGGTACAGTAATTCCTTTG
TGATATAAACTAGATAAGGTGGTATGGTTCAAACTTCCTGTACGACTTTG
TTTGTGGGCATGTGTGCTATCTTTTATTTCAATACATTTGAAATTTAGTG
CCAGTTTTGTCGTCTTATAATCAAATAATACTCCAGATGGAATTCTTTTT
TGAGAGTTATGATAAAGGATGAAGAATTGATGATGAAAGATAGAGTGAAA
GAGGACTGGGAATTGGAGACGATTTTTCCGTATTTGTACATAATCGTAAT
AATATTAAATCTTAACCTTTGTGAAACTCTTTAAGATAGAGGTGTATAAA
CTATGACGTTAGTGCCTTTTGGTACTTCATGTCTTTCTTCATCAAATTGC
ATCCTGGAAGTGGAAGAATTTGTCCTTGTTACTGTTCTTAATTTTTTTAT
TCCCATTCTTAGTATGATTCTTCGTAATTATACAGTAATTAGACTATAAC
AAAAATAATTTTGTTACTTCTAAGCCTGTCGTGGCTGTATACTATA

Coding sequence (CDS) from alignment at Sc0000228:218610..222455-

>BlTCONS00113422 ID=BlTCONS00113422|Name=BlTCONS00113422|organism=Branchiostoma lanceolatum|type=CDS|length=510bp|location=Sequence derived from alignment at Sc0000228:218610..222455- (Branchiostoma lanceolatum)
GTTCAGATCTTAACCGCAAAACTGGGGAACGTAAACAAGCCACAAGAGAA
GATGTCCAAGAAGGCGCCTTACCCACCCCAGCAGCCTTACCCCACCCAGA
ACCAGGCCGCCATGGCTGGACAACCCCCACAGGTACCGGGGGCACCACCA
CCATACATGGCTCATCCGCAGGCACAAGGACAAGCCCCCCCACCTTATTA
CACCTACCAGCAGCAGCCCACGCAGTTTGGAGGAGCGCCCCCTATGCAGC
AGCAGTACGGCCAGCAGCCGGTGCAGGTGGCCATGCAGGTCCCGTACTAC
GCGCCAGGGAGCACTGTTCACGCGCAGAATGCCTTCGACTCTGGAGCCAG
ATTCAGTGCAGGAGCCACACCAAATATTCCTCCCCCGCCACCAGGAGTGA
TGCCGAACCAGGCACAGTTAGCGGCAGCACAGGGCGCCACGGTCGTCGCC
ACGCAGCAGAAGCCCGACTTCTTCACCGGGGGGTCGGGAGGCGGATACAG
TCTGTTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113422BlTCONS00113422-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113422-exon-Sc0000228-1564993656:222453..222455BlTCONS00113422-exon-Sc0000228-1564993656:222453..222455Branchiostoma lanceolatumexon
BlTCONS00113422-exon-Sc0000228-1564993656:221811..221873BlTCONS00113422-exon-Sc0000228-1564993656:221811..221873Branchiostoma lanceolatumexon
BlTCONS00113422-exon-Sc0000228-1564993656:220973..221070BlTCONS00113422-exon-Sc0000228-1564993656:220973..221070Branchiostoma lanceolatumexon
BlTCONS00113422-exon-Sc0000228-1564993656:220102..220320BlTCONS00113422-exon-Sc0000228-1564993656:220102..220320Branchiostoma lanceolatumexon
BlTCONS00113422-exon-Sc0000228-1564993656:218610..219437BlTCONS00113422-exon-Sc0000228-1564993656:218610..219437Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000228genomeSc0000228:218610..222455 -
Properties
Property NameValue
GeneIDBlCUFF055659