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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000228:417696..426941+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113383 ID=BlTCONS00113383|Name=BlTCONS00113383|organism=Branchiostoma lanceolatum|type=mRNA|length=9246bp|location=Sequence derived from alignment at Sc0000228:417696..426941+ (Branchiostoma lanceolatum)
CATCAATGGGAACGGCACCCCTGATGTTGTAAGTTGTTAGGCTGGAACCT
TGTGTACATTTTGATTATCAGGTAACAGTGGGGAGGGGAGGGATACCATC
AATGGGAGCGGCACCCCTGATGTTGTAAGTTTTTGTGTGTGTTTTTTCCA
AGTCTATTCCGTGTCCGTCACAGCCCTTAAATCAAATCTGCTGAATGTCA
AGACAATATAATGTTACTTCAAAAGATGTCTTTTTCTGATGTTGTAAGAT
GTTAGGCTAGGATCTNATATTATGTTACTTCAAAAGATGTCTTTTTCTGA
TGTTGTAAGATGTTAGGCTAGGATCTATGTACATTTTGAATATCAATTAC
ATTTCTGGAAGACCATTTTTCAAATTTGAAGGGAACCATTTTGGGAGATC
TACAGTTTGCCTTGTTTCTGGATGTACAGTCAATGATGATTGAAATATAT
GCTTCTTTTCATGTATCATCGTATCTCAGTTTTAGCTGAATGTAGTTAAA
GATATCTTGGACTTGTGCCCATTGTTCTGATGAAATCACAGATTCTGAAG
AAAAGACTTGTTAACAAAATAACCATTGGGCAGAGCACAGTTTGTGACAT
ATTCTTACAAAATCATATTTATATCATCTGTCTTTTAACCTGGGAAAAAT
TGACCCATCAATTTTAGAAAACCTATCCTCTCTATGGTCTTTCCTGAGGA
AGGCATGTTTGTTTTGTAAATGACTTGGACTGACAAGTGTGAAACATTTC
TGTTGCTAGTCTGTAAGCTTTCAGGAGGAGGCTGTCCTGAGGGAAAGTCC
GTACGTCCAGAACCTGGAGCGCAAGCTGAAGCACATGGACCGACAGCTGA
ACGTCGCGGAGGAGCGCGCCCAGAAGAACACGGCGCTGCTCGGACAGAAG
ATGGTGGAGCTGACCAAGCTGCAGAACCAGGTCACGCACCAAACCAAGGT
AGAGCCGCGTGGACAGAAACGGCACTAGTAGTAGCGCTCCCGCGGAATCA
CGTGTGCTACCACGCATGTAGGTTGCTTCGCCAGCAGGAAACGGCTGTGA
CTTTTGCACAACCTTTTTACTTTAGTCCATATCTCACCATCAAATCCATC
ACTATCATCAACTACCTCATCGCCATGGTGATAAGGTTTAAAGGGACGTT
TTAGACACCGCTCTTCCAATCAATCACAGAAGTTTTTAGAAAGACACATG
AAAGAAATATAAAGATAAAAGCAGTCCAGTAATCCATCATGCAAAGCCTT
CTGTGATTGGTTGCCTTATTCACTCACCTCATCACCCAGCGCATGCTAAC
TGCCATTTAGAGTTTCTTATGCATGATTCAGGCATTCTACCTGCCCAACT
AGTGTGCTTGGGAAAAATCATTCAGAGGCTTATAGAATTTTGAAAGTTGA
TAATTGTAAGTTTATAATTCATCATGTCTGTAAAATTCTAGCTGTTTCTG
AAAGAAAGATGAAATTGATATGTTTTATTCAAAACTAAACCCCACATTTT
GATATCCAAAAAGAAAAATCAGGAACTTATGGCACCACATATATCTCATA
TATATCATTAGAGGATTATGAATTGGAGTTACTTATTTGGTTACTAATAT
TTCTCCACCTTTTCTTCCAGGAGTATCTTCATTTGGAACGTTCGTACTCA
GATATGCAGAAGAGATACCACAGAGGAGGTCTTAGATAACAAACATAGAA
AACCAGGATTTTTTTTAGTAATAAGGCAGTTCACATTTCAAACTGCACAT
GTGCATCAAGATGCATTGTGGCCCCTGAGACATATTATGATAAAACAAAA
CATGTCTTGATATGAATTAACCATGGTGTAGACAAGAACTGTTTACAAGT
TAAGGTCATTCACCTTTGACATACTACCCAATACATCTCATGTGCAGTTT
AGATCGTGAAGCAGCTTATTAATATGAAGGTCTTTTTGTAGCAAAGTGTA
TTGACATCGCAAAGAGATTTTGATATATATAAACAATTACTTGTACACAA
AAAGTTCTATTTGCATATTTCTAGTAAAGAATCTGATTCATAGATAATCT
TGTTGTTAACATTATTCAGTATCAAAGAGTGGTTATGTATGTATATGATG
CTCATGTATTTGGTTTGTATATTATTCTGTTGATTTTTAATCAGTATTGC
TGCTTCTCAATGACTTTCGGGATGATTTTGATATTGCTTGATGATAAGTC
CAGAAGATTGAATGTGTGTTTTGGGTAATTTTATCAATCGTGGATGAAAA
CTTGACCTTATGTTATGAGGAATGAATGACAATAGCCAGTACCATCTGAC
CATTCTACAGTACATGAATATAATGCAAAAATCATAATGGTATGAATTTC
TATGAAGACATACATTATTGGGCTGATAAGAGATGCATATTTCTACGTTT
TGTAAAAGGATATGCCAGAGAAAATTAACATTGTTTGTGGGGTAAATGAA
TCATATAATGTTACAGTTTTTAAAATTGCATGTTATGGTGATGCCAGGAC
AAAACTATCTTTAATGTTTTCACAATTTTCTGATGTCACAAATTCCCTAC
CTTATACATTTGACAAAAGCTACTTTGTGATAGATTTCTAGGTCACCTGG
ATCGGATCAGTCCCAATCATACATGTATAACTCTTTGAAAATTTGTAATG
AAAACCTTGTCAAGTCCATGATGTGAAAGTAGTAATCTCCAAGCAGATCT
ACACAGTGCCAAGAATCGTATATGCTAGCCAGAGAATCTCCAGTCAGCCA
GAGAAGCTTCTCTGGTTAGCATATACAATTTTCGGCACCGTGTAGATCTG
CTTGGAGATTATGAAAGTAGTAGCAGATGAGCAATCAGTCTCACAGTTGA
TGGAGGTACTCATGGCGTGGAGAACATAGTTCATGTACTAGTATTTTCTT
CACAATGTGTGTATATAGTGGAAATACTTGTCTACTACACAGAACAGTAT
GGAGGAGCGCAGAGAGGCTGGGAATACTAGGTGAAGGGTAACCAGTATGT
TTGAAGAAATAGCCTAGGAATGAATTGTACTATACTGAAATTCTATTTTT
ATTAAAGGACCCCAGAATCATTCAGAGTTGACATTTACTACTGTCGTTTC
TGTTGGTTTAGATAACGCCTTTTTATGGGACATATTTTGTTGTTCATTCA
CCAACAAAGTGATTTTGACATGTCATGCTTTAGGGATTTGCATATCGAAC
ATCATAGCTCAGTCATGATTTAAGGATTTCTGTGCAAAAGTTATGATTCC
TTTTAGCTGTGGTTGAGGAAGGGAACGGAAGATACCAGAAGCAGGTGTTA
TAAAATGAGACAACTTCCCCGTTCACTGGAGATAGCAATTACCTTTTATT
GGTCAATCAAGGTGTGTCCAGGCAAACAACAACCTTTCTCCAGAGACAAG
AAGAGTGTTGCTGGACGAAAGAATGACCTGTAGAACACTAAGTCTTGCCA
AGGAGGTTTAAGACAGTCTACTAATTACCACTTGTTGGTCAGTCAACGAG
GTGTGTCCTGCACAAACAAAAACCTTTCTCCAGAGACTCGAGCCATGTTG
CTGGACGAAATAAATGACCTGTAGGACACTGAGTCTTGCCAAGGAGGTTT
AAGACAGTATTAAACTTCCTTGGTCTTGCTCAGTGAAAGGACATGATGGA
ACGATATGACTCAATACTGTGTGCTGGCAATTGAACTCCTTAACTGTTGC
CTCTTGTAAAAGAATATATATGGCCTCCGTCGGTCAGTATTGGGAATGAA
TGGAAGCTGGTGATTGTAATGACCAAAGATTTATGGAGTGTCATTAGAAT
TACCCCCCCTGGTAATTCTAAACGTTACATAAGACCAAGGAGGTTATATA
AGACATAAACAGTTTACTATACATCTGTCAAAATGGGTACAAAAATACAT
AGTACAGTACCAGACACTTGGCTGCATTTTGTTCAAATCTCAACATTCAG
TGCTAGTAAAGAAAGCAGATTGCAAATGGCGATGTAGAAACCTCGACTTG
ACTTGACCACAAAATAGATGTCTACATGTATTCTTAGGTTCTTCCCTATT
GTCCTTCGAATTATAATGAGAATGTGACAAAGACATCCCTTGAGACAAGC
CATAATGGTTTATTTTCGAGTGGAGGGAACCTGGAGAGACCAGTTTTCAG
TTGCAGCAAGGCAGCAAGATGATGCGAAAGGGAGAGTTTTTGCTCCTCGA
AGGGAAGAAAGGCCATATCCTTCGCCGCAAAGCTCTCGTCAACAACCAAC
ACCTTCAGTTCGAACTGGGCATGTTGGAGCAAGAGAAACGGAGGGCGGAG
GTTCGACTCAGGTTTGTACAAGAATCGACTACAATAATACGTTAAACCAA
GGAGGTTATATAGACTATATAACCTCCTTGGTTAAACTTTACATAAGGAG
GTTTACCTGGTTGTACTTCTTTGGTCATTCTTACAAAAATTGTTTTCGGC
ATTAACATAAAAGTTAATCCCTGTGTTGGTTACCTTGAAGTAAGACAACA
ACGGCAGTAGATTTTATATTTTTGATAGGGGTATATAATTGTGATGGTAG
AAATGTTCAAACTGACATTGCTTTGACATAGCATCTCGTCCAAACACTTT
TCAGCAAATATCACACTTTTCTGTTCCGACAACCAAGGAATTGTGACAAC
AAAGTGTGTTGAGGTTGATTAAAGTTTATTTTTAGATATCTGGGTGCTGA
GGACGTTTTTTCATTGTTAATGATTGTAATCAAGAGGACAAAAGGCAATT
AGTCGGTGGACCGATAATTACTCTTTGTGACTCGTAACAATGGATGGCTA
GGAAGTAATTGTGTTGTTGGCATCGTTGTTGTGGTAACAGTAAGCAGTAG
TGCAAGTTCCTACACTTCCGCCTATCTCGACTGACCGGCCAGGCGAGTTT
TGTAGCCTCCATCTCAGACCTTCTAGATGCGGCGGCCGCCTTCTAGGCGC
GTGCGTGGATACGATCTCTCCAGCATAAGAGCCCATGTTGAAGATAGTTA
ATCAGCGCTCCAAACAAAATGAACGCCTGCTGCACCCAGAAGGTCTGCGA
AGAAGGCTAGTTTTGGTCGTGTTTGCCCAAGTGCATCTTGCTAAGTTGGC
GTTTAATAGGGGGCGCGTCTATCCATACGTACCTTTCCCTTCGATTGCAA
GTTCAACATGTTCTTTTTTTTCAGATTCGAGCTAAGTATGTTGGATGTTT
GCCATGAAATTGCACTGGTATGCTATTGGTCGAAAATTTGTACCGTTGTA
TCTTGTAGATTTTAGAATATTTCCCCTTCTGTTTCTACAGATCAAAGAAG
GACCAGTTTTTGCGTCAGTTTCAAAACCTCCGAAAACGCAGCGACGAAAT
CAGGAAAGGTTTAGAGCACAGAGAGCATTCACCCCGAAAAACCTGCATTG
GACCGTCTGCACTGCCATCGTCAAGCACGACAAGGTCTTCGGAAGGAAAC
TCTGTCGGTTCCAAAGAAGATATATTCCGTGCCGGTGAAAAAACCGAAAC
CGCACGGAAAAGATGGTCAATTGCAACTTGTGCGGTGGGGTGTTCACAAC
ATATACAACGTCTAAGAGGGTTTCCAACATTCCCATGTCAGATCAAGCCA
AGTCGACGTTTCAAAATCACGGAAGGCGACAAACATGTTTCTAGCAAGGA
TAAGGCCGTATCAAAGCGTCGTGAAAGCCTCGATCCCACAATGTTAGCCT
CTGTGCTGGATGTAGACAGCTCTATTGTAAAGCTGGACGCACAGGTCTAT
GCCCGGGTGCAATGGTCGCCCACGTCTGTTCGAAAGACTTTGGCACTCAT
GGGCGATGAAGAGCACAACGGAGGGAAGACAGTGCCTTCCTGCGGCGTGA
CGCGGCAACGCAGAGCAAGTGTTGCTTGTCCCACCTGGACGAGCAGACCG
AGCGGCACACGGCTTCCACCTTTAACGTCTAACAGGATGACTGACACGGC
TGTTATGAGGAATGGCGCAAGCGTACGTGGACGAAGGCACTCTCTCCCTG
AAATAACTGTTACTCATCCACCATTGACGGTCGAGTCACACGGTCACGTA
GGCGGCATGGGGTCCTGTCTAGGCTTTGGCACAAAGTCTAGGTCAAGAAA
ATCTTCAGTTACCTTCGCTGAAAGAAATATCATAAAAGAAGATGATGATG
ATGATCTTCTCCTGTCTCATGACCTCGGTTAAAAGCATGCAGGCTGATTT
GATTCCTCATCAATATTGTACAGGAAAAGCAGTGAAAGATGAAATACACT
TTATTTGCCATTGCCCTCATTATAGCACCGAAAGAGACCAACTATTTAAC
CTAGTCAGCAAACTTGTCCCCAGCTTTGTAACGTTGGGTAACATAAATTC
GCCATTTTTCCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATAAA
CCATCCTTTTTTTCTATTATTCTGTCAGTATCATGTACTATCTTTGCACT
AATCATATATATGGTAGATTTTGTCTCTAGTCGTGCTGACACCATAATAT
TTCAACTTGAAACTACCGTCCGCCGCACGCACAATGACGGTGTTGTCGGA
CAGGTGTGAACATTATTTCGGGAGAGAAGATTCGTCTTGAATATCTTACC
GCTAATTACATTTTATACAGCAGCTATTCGTTCCATCCTTGGCTTGAGGA
GAGTGCTATGGATATAGACGTGTCCAAGTAAAAAAAATACACGAAAAAAC
GGCCGTACCGCACGCATCAGGCCTTCGGGAACAACCCGTGTGTTGAGTCG
GTAGAACGTCACTCAAAGTTCACCCCCACCGTCATGGAAATTTGTACATT
ATTCATCGGGGCGTTAGCTGGATGCCGTAGAAATGGTAATACTACTATGT
CCATGTGTTTCTGCTTGTGCTAAGAGCAAACTTTGAGGAAAATATCGCCA
TCAGTCCACTATCACACACAACATTTAGACAAAAAAGTGTTCCTCGCAAA
CGTTTGTCGTCTGCCGAATAGCAGGATTCTGGGTAACGAATATGGCGGCG
GGAAAATTCACCGTAGTGCCGTAGCCATTGGTTGTAGCAACAAAGAAGGG
TTTTGATGATTAATCACACTTAGAGTCCAGTTGTAGGTTAGCAAAAGAGA
TTCTAATAAGTTGTATTGTAAATAATTGTGTTGAGCAGGAAGCGGATGTG
ACATTTGTCTTATAAACCAGCGAACAACTATGTAGTATAATTCTCCCACG
AAGCCCTCAGACTGTGACAATAAGGGACGGAGAGTTTTTGACGTAGCCAA
CTTCTAATGCATGGTTATCGAAGCTTTTCAGCCAGTGTTCTGAATACGTT
AGTCTGTCAAGTTTGCATTTCTAGCGGTATTACTGATGTTGCATCTAGCA
CATATCCCTAAATACCCCGTTTTCGAAAAATCGCGAATTTAAGTACCCCG
CGAATTTATGTTACCCAACGTTACGTCGCACAGCCAATGCATATATCTCC
CAAAACGTCGGGAATTTCATATTCCACTGTGCACAAAAAAAGAAATCAAA
CCCAATAGCAACTGTATAGTTTAGATGTAGCGCTAGTTGACGATTTTCAT
TTTACTTTGTGTTTATTTCATTACTGTGTAATTATCATTATCTCATTATC
TCATTTCCTTGTATTCTTGCAACTAGCCCCCGGGCATGAATTTGCAATAA
AGTTATTTTTATTATCAATAGATCTAGATAAGGCCATGTTGATCCGATTA
TATGGATAACATCCTCTGGGAACCCTAAGACTGATGCGACCGTGCGAATA
AAACAAAAGTTTGTAAAAAAAAGAAAAGTGCCTTCAGTATGAAATCTAAG
TGGTCAGGAAGGTTGAACAAATGACTAAACACACAGAGGTACGACGGTAT
TATAAAACTTACCAAGGTCAAAAAGGACACGAGGCATCTCTGACATCTGG
TTATAGCTTCCGGACGTCTCTCTGAAAACCTCTGACATCTTGTCGTCACG
AGAGCGAAGCATAGAATGACCAGGGAAACTTGAACTTGTTGTCAACTTCT
TCTTCTTCTTCTTTGGCAGTCCAGTCTCGGAAGACTATATGTGCGCCCCT
GGGGTTCTCTTGTGACTTCTGATGTGGCTTGAGAGTCCAGCTCTGGATTT
GCACACCCTGTTGCACCAAGGACATTATATAATGTCCTTGGTTGCACACG
CTGCATGAGTGCTGTGTGGTTAGGGGTGCATTAGGTTGTCAACAAAGCCA
CAAAAATTGTGCTTCCCTTGTCGCTACGGAAACAGTGTGGCAACCAATGA
GAGACGAGATATTTTGTGTACATCGGCCAATCACACTTTGTTATTGGCCA
ATCAGAGGCGTGGGTACATGACAATTGGATCATGCCATCCAGGACAGGGG
GGACTTTTTCCAATAACAAAAAAGAAGAAACCAATCCAACAAAAAAAAAA
CGCAGAATTCACAAAAGGCACAGTACCACATATTCATAATGTCACATTGA
TTAAACAGCATAGTATAAAGTCTTATTTTGATAAGAAAAGCGACGGAATA
TTATGCTGCTTTACTGTGGTTCAGATGTCTTGATCAAAGTGATAAATCTT
CCCTTGGTGCTGAAAAACCTTCTATTGGCCTGGACCTACAAACATTGACA
TTCCTTTGCTGTTGCTACTTTATTTTCATACCTTGAGGCGCTTATAAAAA
TCGCCGTGTTGCTGACCATTGACGTTTCCCGAGTTGTGTCCTACTTGCCA
GGGACGACCATTGAGCGAGTGTGCTTGTTGTGATTAACGATTTCCCGGCC
TGTCATCCACGGTCCATGGATGGTGGCCGATGTATAGACTCTCCTCAATA
ATAATGAAAATCAGATAATGATTTGCATGATAATTATCTAATTATGTAAA
TCACCACTAAAGCTATCTACATACCAAAAATCATGACCATCCATCAACCC
CTTCTTGAGTTATTCTGTTTCAAAGTCTGAAGCAAAACCTGCTTCTTCAC
TTTAAAAAAGCCAATGGGGGCCAAAACCACTACATGCACCACTTACTTTC
TTACTTTCCGAAGGGCTTTCTACCATTCAAAAATCACGACCATGACATGT
CCAGAACACGAGATATCGAACCCAGAAGTTCCGCAGCAGTACCGTAACAG
GCCGCTAGGGGAACCAAAATCTTATTGTTTTTAGGTCTCATCAACACCTA
CCCAAATACCAAATATAAAGACAATCCATCAAGGCCTTCTCGAGTTATAC
TGCTAATGCACACACATACATACATACATAGAAACGTACCCCGAAC Coding sequence (CDS) from alignment at Sc0000228:417696..426941+ >BlTCONS00113383 ID=BlTCONS00113383|Name=BlTCONS00113383|organism=Branchiostoma lanceolatum|type=CDS|length=1035bp|location=Sequence derived from alignment at Sc0000228:417696..426941+ (Branchiostoma lanceolatum)
ATGATGCGAAAGGGAGAGTTTTTGCTCCTCGAAGGGAAGAAAGGCCATAT
CCTTCGCCGCAAAGCTCTCGTCAACAACCAACACCTTCAGTTCGAACTGG
GCATGTTGGAGCAAGAGAAACGGAGGGCGGAGGTTCGACTCAGATCAAAG
AAGGACCAGTTTTTGCGTCAGTTTCAAAACCTCCGAAAACGCAGCGACGA
AATCAGGAAAGGTTTAGAGCACAGAGAGCATTCACCCCGAAAAACCTGCA
TTGGACCGTCTGCACTGCCATCGTCAAGCACGACAAGGTCTTCGGAAGGA
AACTCTGTCGGTTCCAAAGAAGATATATTCCGTGCCGGTGAAAAAACCGA
AACCGCACGGAAAAGATGGTCAATTGCAACTTGTGCGGTGGGGTGTTCAC
AACATATACAACGTCTAAGAGGGTTTCCAACATTCCCATGTCAGATCAAG
CCAAGTCGACGTTTCAAAATCACGGAAGGCGACAAACATGTTTCTAGCAA
GGATAAGGCCGTATCAAAGCGTCGTGAAAGCCTCGATCCCACAATGTTAG
CCTCTGTGCTGGATGTAGACAGCTCTATTGTAAAGCTGGACGCACAGGTC
TATGCCCGGGTGCAATGGTCGCCCACGTCTGTTCGAAAGACTTTGGCACT
CATGGGCGATGAAGAGCACAACGGAGGGAAGACAGTGCCTTCCTGCGGCG
TGACGCGGCAACGCAGAGCAAGTGTTGCTTGTCCCACCTGGACGAGCAGA
CCGAGCGGCACACGGCTTCCACCTTTAACGTCTAACAGGATGACTGACAC
GGCTGTTATGAGGAATGGCGCAAGCGTACGTGGACGAAGGCACTCTCTCC
CTGAAATAACTGTTACTCATCCACCATTGACGGTCGAGTCACACGGTCAC
GTAGGCGGCATGGGGTCCTGTCTAGGCTTTGGCACAAAGTCTAGGTCAAG
AAAATCTTCAGTTACCTTCGCTGAAAGAAATATCATAAAAGAAGATGATG
ATGATGATCTTCTCCTGTCTCATGACCTCGGTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113383-exon-Sc0000228-1564993656:417696..417723 | BlTCONS00113383-exon-Sc0000228-1564993656:417696..417723 | Branchiostoma lanceolatum | exon |
| BlTCONS00113383-exon-Sc0000228-1564993656:418455..418712 | BlTCONS00113383-exon-Sc0000228-1564993656:418455..418712 | Branchiostoma lanceolatum | exon |
| BlTCONS00113383-exon-Sc0000228-1564993656:419316..422006 | BlTCONS00113383-exon-Sc0000228-1564993656:419316..422006 | Branchiostoma lanceolatum | exon |
| BlTCONS00113383-exon-Sc0000228-1564993656:422986..426941 | BlTCONS00113383-exon-Sc0000228-1564993656:422986..426941 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000228 | genome | Sc0000228:417696..426941 + |
Properties
| Property Name | Value |
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| GeneID | BlCUFF055636 |
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