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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000228:352463..360003+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113352 ID=BlTCONS00113352|Name=BlTCONS00113352|organism=Branchiostoma lanceolatum|type=mRNA|length=7541bp|location=Sequence derived from alignment at Sc0000228:352463..360003+ (Branchiostoma lanceolatum)
AGGTTTTTCTTTAATTCTGTATGAAAATCTCAAGATTAGGCTCTGTAAAT
TCATTTACTTTTGTAAGGATTCGATTTTGTGGTAGGAGGGGAAAGGGGGG
TTCCTAGCAACATGCCAGACTAACCGGCCAATTGGCCCCTGGCAGCAAGA
GTTGTGTAACACAGGCTAGTTCTTACCCCTCCCCACTTTCATCTGAAGAA
AATCTTACCTGACAACAGTTTAACTTTGATGTACCATGCTTGTATAGTGT
ACATAAGTGTCAGACCTGGGACTACCAAACCTGTTGGGTGGGGACTATCT
TATGAAACTGACCAGATTTTAGTTTTAGGAATGTAGAATACTGAATACTT
CTGTGTTGTATTTCTGTATCTATATAATCAGAACCCGTATAACATTAACA
GCCTTTCGGCATAACACCAACTTCACAGGCAATTGGCGTGCCCGTGGCTG
CAGCTGGTTATATTACTCTGAACAACTTTTCACACTTAACCTTTGCACTT
CTTACTGCAAGTGTACATGTTGTACAAGCTACCATCTGTAGTTCATATAC
TCTCTTGATGTGGAAAATAAGCAAAAGAATTGAAACAAGTGTGCTATTCA
GAAAAGTACTGGATTTGATTAGAATCTCCAACTATTCGTTCCCTGCCGTT
GAATCATCTCTAGACAGGACCAACAGATTGGGAAGCGATGCAAGACCACA
TCACCAAACATACGGACCTCCTGAACGTAACGTGCGAGGGCTGCAACTGG
ACCTTCCCTACCATGGGCCAGCTGGACGATCACTTCAGCAAGCAGCACAT
GAAAATTAGTTCACTCTTCACCTTGGCGCAGAAACAGAGGATAGCGCGAA
AGTCTGCCCAGAGAAGGAAGAGGAAGTACAAATGTGAAAACTGTAAGAAG
GTTAGAGACACTTGTGCAGATGCCAATGTCTGATTTCTAACTGTTATTAC
TTTTAACTTTGCAATACACGTGCAATACATTTTCTCAGAGAAAGTCAGGG
AAGTCCATTTCTCTGGACAAGTTGAAGTATTTCCATTTAAGACTTATAAA
TCCATGTGACTTAAGGGTATAACTAATGATAAGCTAAGTTACAGACTTGG
GTGCATAATAGGTTGTGGAAAAGTTTGCTATGTGTGTTTTTTCCCTTGTT
CCTTAGGGTGTTTTCTGTCTTTATCTTTATTTGCATTGTAGAATTTTTGC
TATAGTTCCAGCACTTTCTCCCTATATATATTACCACGCAAAATGTTCTT
ACAATCTTGACAAATCTGATGTCATCCTTTTCAGGCTTACATTTGCTTCA
ATAGTTGTGACTGTTCAAAACAAACAGTCATGTGTAATCTCAACTAGAAT
GCCATCCTTTCTACACTACAGTCAAGTGATAATTTGAATGTCATTCTTTT
TCCAGGCTTTCTTCTTCAAAGAGGAGGATCTACGTACCCACGAGCAGTGT
CACATTGAGGCCTCTCTAGACTTCCGGTGCTACGTCCCAGACTGCACAAA
GGCTCAGGACACCTTCGGGGATTGGATAAAGATGAAGGTGCAACCTTGTT
CCATGTCGAGGAAAGACATCTTTAACTGTAATTATTGACACAAAGGATAC
AAGCGATCGCTGTTTTTGTTTACATCCTGGGTATTTGACGACTGGTAGGC
AAAATGACGTGAGCAGATTAGATTATCAGATCAAATTAGTAATTAATATG
TAAATTAATATTTTGCGTTTCACTTCATTTTGGCCTCCCATTGCGTCACT
TTGACATCATCGCGATCACTTGTATTGGACTTATTGTTACATATGAATAC
ATTTACTTTTGTGGTAGTTTATTTCAGGGTTTGTATGGAAAATTAGGATT
TTGCTGTATCTAAAGTTTGTGGTTGAAACATTTTGTTGTAGAATTACAAA
ACACATAGTGTTCATGTATTTGCAGGGTTATGATTTTGCATCAATAGAGG
TCACCATGAAAACCGCGAAAATAAAACCATTGCAATCACTTCAAGATTTA
CAGCACCCACATTTTCTATTACGCATTTTAGTTGGCAATTTCTGTTAAAG
GTCCTTTTTTATAACAATGATGAAGTTTCAAGCAAGTCCATGTTTATTTG
TCATGCAAACTTTATTTGACCTGGAAAAAGTGCACAGTTTGTTTCTGCTT
TGCAGCATTATGCACGACATGTATTTTACACTACACTCTCCTTCCAGAGC
CATCTGAGGTCTGCACATAAGGTGCACATAGCAGCCAAGGAGAAGCCTTA
TAAACCCAAGAAACAAAAGTACGACAACCTTCCCACCATGTGTGATGCTT
GTGGGAAAGTTTTCTGCGGAAGACGTAAGTTTCTAAGCTCCTAGATGTCT
GTGTTCCCGTGTTGTCCATTCGTTGTTTGTCAGATTTATGACTAATGCAC
TTACTGTAAATTTTTGTACTGTTGCAGTGGTTTTGATTCGCAGTGAGAGG
GAAAAAGGAGTTTTTGAGGGGTTTTAGATTTGCGGTTGAAACAGTTCTTT
ATTAGGCCACAGCAAGTAAATTTTATGGATGACATCCTCTGCAGACTCAA
AAATTAATGAGATACGGCGGGAAACAAAAAAAAAACAAGGTGGGCCAAAA
AAAACAAGATTCCTATATTTTCAAATTTTGAGATCATAATTCTTGTTAAA
CAAGAATTGAGGCGACGAAATATGATATCATGACCAACAGGTCTTTTAGT
CTTGTATTCAACCAATGTATTAGCCCTGTATTCATTCATATATAATATAA
AACCTCCTTGATTCAACAGTAAACATGTCCTTGTAGATGTGTATACATCT
CAATAGACCAACTACAACAAATGCAGAAAAGAGCTTGTTGTACCATCATC
TGAAGCAACTACACTGGGTATGCATAATATTGCATTGAAACACCTTGTGT
ATACAGCTCAATTAACTAGAACCCCACCCCCACCCCATTATTTATATAAT
ATCCTTGCTAGAACAACTGCAGAAAACAGCTTGTTATTATACCATCATGG
GCAGGAACTACACTGAGTATTCATATGCAATGAAACACCTTAGACTGTCA
ACGTTTACGACATATTTGCCAATTTTTGGCATGTTGACCACCGTCGGAGG
GCAATGAAATTTCTTGTTTTTTATTTTGAAATCAGGCGAAAATTAATGAG
CGCGCTGATGTCATCCATAAAAATTACTTGCTGTGGCCTTACAGTAGTTA
CTGTAGTGATACATTGGTATTGCATATTGTAGTGTCTCAGTGAAGAGTTC
ACCAAACAACCTTGAAAATAAAACCACTAGTCTAACAATAGAAGGTTTTA
AGGATAACAGTAGTAAGCCAATCAAGCGTAAGGGCAGTACTGCTCATGGT
AAACTTTCATTTATTCATTCAGTCATTCATTCATTCTTCCATTCATTTGT
TTCTTGTAGGTAATCTGACGAGGCACATGAAGTCGCACAGAGAGCCCTTG
AAGTGCCCACAGTGCCCCAAGTTTTCTACAAAGCGTCCAAACATGCTCAG
GGCACACATGGAGAAGCACAGAGGGGAGGGCAAGTTCCACTGCAAGCAGT
GTGGGTACTTCGCTCCCGTACGGGCCGACCTCAAAAACCACATGGAGATC
GTACACTCTGGTAAGGACTCATGTCTTCAGCATGGTTTAGAAATAGTTTT
CTGCACTGGCGATATATAAATAGAACACCTACATGTGTGTATAAGCAAGG
AGGTTTTATATAAAACCTCCTTGGTATAAGCTAGTTCATGGTTTGAAATG
CACATGATTGTACCAAGGAGGTTTTATATAGAAAACCTCCTTGATTGTAC
AGAGTGATGCATTGTAGGTAATATGTCAAAGTTGAAGGCCCCTGGCCAGT
GGCCTTCAACTTTGACATATTACCCACAGTTCATGTGCACTTCAAACTGG
GAAGTAGCTTATTATAGAGCATGATTGAACCATCTGTGGGGAAAATCAAG
TTAGTTGTAGATAAATCTTGATAAATGTTTTTTTTTTTCACTTGGTCTGC
AGGTTGTATGCTGACTTGTCTACATTTTTCTGCAAAGCACTCTCATTTTT
AAGACCAGGGTTCACCAGCTATGAACTTAGTAATACTAAGATGCTGATCT
ACATTATTTTTTCATTTCAGAAGTCAAGCCCTACATGTGTGACCTCTGTG
GGAAGTTTTTCAAGTTTTTGGGTGAGACGATTATTTTATTTGGACACTTT
TTTCTGAACCTGTTTTCACAAAACTGCTCCAAACCAACCATTTTTCATAG
TGTGTCCTTTTAGGTATTTAGCACCATGTAAAATCATTTCAAATCAAAAT
ATGCAACTACTGGATACCAGTACTACTACTATGTGCATAATTACACAAAT
ATCAGCATGCCTCTCTCTTTTTAGATACATGTATCAGCAAAATGATGAAG
TGTCCTGTTACCATAAATGTTTTTCTTGATACACTGTAAATCTTCAAACA
AATGCAGTGGTTTTATTTTCACAACTTTTGTAGTGACCCCTCCACAATGG
ACATGCATTTCCAATGTAACTGTACTACATAATTGTTTCAACCATGAATT
AACACTGCAAAAACATCTTTTCCCCTCCTACTGTTAAATCAAGTCCTGTA
TCCATATCTGAAGTCCTCGCCAAAATAAATGAATTTACAGTACTAACGCT
ACAGCCATTGTCTTCCAGGAAATCTTAGTCAGCACAGAAAGGTGATTCAC
TCAGATGCTCGGCCCTTTTCCTGTACCAAGTGTAACCATACCTCCAAGAC
CAAGGAAGCCCTGAATAGACACAACAGTAAAGTACACTCTGACAGCAAAA
TGACATGTCCTCACTGTGGCTTCTCTACGCACGTCAAGTCTGTTCTAGAG
GTTTGTAAAAGCTGAATTTTAGTCACGCTGATGTCGTTCTTTGTTCTATA
AGTAACAATGTATGCTGTCAGAAAAAAACTGTCAGCAAAAAATGGCATAT
TAAGCTTTCCCTGCCTTTCTGAAATTTTTTTTGTTGCTTTCAATTGTAAA
ATTTTGTTATCAAACCCTTCTATTGTTTTTGCCAGGTCTTCTAAATATAC
AAGTGTAGATTTGGCATGAATTTTGTAGTCTAGAACAACTGGCAGAAAAC
ATTTTGTTATCCTATATGGTGTTCTAGAAATGTGTTGAAGACAGAGTTAT
ACATGACATATTTTTTTATATGCTGTGCAGAAACACATGGACTTGCACAG
TGAAGACCGCCAACACAAGTGTCCTCAGTGTACCTATGGCTTCAAGGAGA
GCAACGCCCTCAAGAGACATATGGAGGAAGTGCACGCAGGTGAGATGCGC
AGGTTATACATGTACTACATGTAGTAGGTAGGATGTTTGCAAGAATGTGG
GTCCCATTCATGGCAAAGAAATGATGACTGAGTTTGCAAACAGTGATATA
GGGCTTTTTATCTCATACCTGGGCAGGGATAACGTTCGATATGGGACTGT
TCGGAACCGGGTGATAACTTGGGTTATCACACAGGGTTCTACTTTTATCA
GGTGGGCTTCCATAGAATGTTTCCAATGCCATTAACGTGCACCAGTTGCG
CTGCTGTTGAAAATTCGAATTCGTACTTTGGAACAGCTGCTGTTACAATT
TTATGTTTGAGGACACCAACTTTTTTCAATATCTGGCGCATTTTGTCTAT
TCCCCCTGATCAATTTCGAAATTTGAGCCCTGTATAATTGTATTCTCTAT
GTACTAAAAGTTCTGTAACGGTATGGCCCCAAATGGGAGTTACACCTCTT
GTTGAACTGAGGAGTTTCCATGTCCCGTGTGCAGGAAGTTTGACTGTTTT
CTTCCTTACCACAGAAAAGCCCCTTCACCACTGCAGCATGTGTAGTTACA
GCTGTAACAACCACATCCGACTGGAGGAGCACGAAATGGCTCATCTGGAG
GCCAGGTACAACTGTAACATCTGCGAATTCAAATCCAAGTGGAGGGCATC
CTTGTTCCGACATTACAAGGTACAGTACTTTAAATTCATTTTTTTTGACA
GAGACTTGATTTTGTGGTAGAAGGGAATTCAAAGGAGTTTTTTTTACAGT
GTTTAAAGTTTGCTTTTTAAACAATTTTGATTTTGTGGTAGAAGGGAAAA
GAGTTTTTTTATAGCGTTTTAAGTTTGCTTTTTAAACAATTTTGATTTTG
TGGTAGAAGGGAAAGGATTTTTTAAATAGTATTTTAAGTTTGCTTTTTAA
ACAATTCTGTAGTACAGTAACTGTTGTAATGAATTGGAAATACATGTCTG
TGGTGTCGTGAATCCTCAGTGAATTGCTGTGTAGAGGTGACTGAAAAAAC
AAAAACACCACAAACATTTTGAGATGGAAAGTACATTGTGTGAATTTAGT
AGTCTGGATCAGGCACTCTTTGTAATGTACTTTAGGGGCACTATTGTAAG
TTCAACTTTGTTGAGATATGTATAATGTATTAATAAGGAGCTACAGGTAC
ACTTACATGCTGGGGTTCCTACCATATTTGATAGCAATGGTTATTGTGCT
TGTCAAAAAAGGGCAGATGAAAATTTTTCTGCAACTTTGGACTTGCATAT
TGTGTATATAGCAACTACATGTATCGTTTTGTTTTGAGCAGTGGGAAAGG
AGCTTGCTATCATTTAATATCATGACTTTATTAAGTTACCGGCTACAGTA
ATGCCTTTCAGTAAAGGTTTCTTGTTTTTTTCTATCAAAAATCCAGGTGG
TACACAACATTCAGAAACCTGTGGTGAAGCTAGCCAAGGTATACCCAGCC
TCAGATTCAAACATCATCCCATCCTCGAGGTCTTTACAGACAGTAGTGGC
TTCCGAAGCAACTGTCACCATACCGGTGACATCCACAGGTGAGGTCGATG
GCGCAACGGCAATCCTGATGGGACTCGCTTACGGAGCTGGGAGCTCCAAT
AATATAGAGGAATATGTTAAGACTGTTGATTGGAGATAGACGATCATTTG
ATTCTTTGTATTGTTATCAGAAGGGCCATTATATAAACAGTTGTTCGCAC
CAGTTATTTTGAAAAAATGGCTGAACGGTAGTTATAAAGAATATATTTAA
TAGTTTGCATGAGCAGTTACAGAAAACAGTTCAAAGTTTTGTTCTTACTC
TAAAGTCAAGGCATTGGTTATGCTTAAAGTTTATCATTGGAACATTTGTT
CGTAATGAAGATTTTGTTTCTCATGTGAATTCTTGAACAACTATAGATAT
CTGGAGAAAACTGAGTTATTAAAAATAGTTTGGTGATATTAGTCTGGGTA
CCACCCTTCTTAGTTAACTCTGGTTCATATACTGGTGTGAGTGTGAACTG
TAATACATGTTAACTGAAAAGGATGGTACTCAGGCTAAACAGTTACAGTA
CCCTGTTTATTACCATTAGGGTCCTTTCAGTTTTTGGAAACCAACGTTGC
TGTTTATCAGTATTAAAGAAAAAAAGGACAGCAAAAACTTGTGTCCTGCA
CCATTTATTGTTTCATTTTCTCATGTGCCATACTACATGTATACGTAGTA
CATGTTATAATTCCAATGAGTCTTAGAGCATTTTCTTGGAG Coding sequence (CDS) from alignment at Sc0000228:352463..360003+ >BlTCONS00113352 ID=BlTCONS00113352|Name=BlTCONS00113352|organism=Branchiostoma lanceolatum|type=CDS|length=1074bp|location=Sequence derived from alignment at Sc0000228:352463..360003+ (Branchiostoma lanceolatum)
ATGAAGAGCCATCTGAGGTCTGCACATAAGGTGCACATAGCAGCCAAGGA
GAAGCCTTATAAACCCAAGAAACAAAAGTACGACAACCTTCCCACCATGT
GTGATGCTTGTGGGAAAGTTTTCTGCGGAAGACGTAATCTGACGAGGCAC
ATGAAGTCGCACAGAGAGCCCTTGAAGTGCCCACAGTGCCCCAAGTTTTC
TACAAAGCGTCCAAACATGCTCAGGGCACACATGGAGAAGCACAGAGGGG
AGGGCAAGTTCCACTGCAAGCAGTGTGGGTACTTCGCTCCCGTACGGGCC
GACCTCAAAAACCACATGGAGATCGTACACTCTGAAGTCAAGCCCTACAT
GTGTGACCTCTGTGGGAAGTTTTTCAAGTTTTTGGGAAATCTTAGTCAGC
ACAGAAAGGTGATTCACTCAGATGCTCGGCCCTTTTCCTGTACCAAGTGT
AACCATACCTCCAAGACCAAGGAAGCCCTGAATAGACACAACAGTAAAGT
ACACTCTGACAGCAAAATGACATGTCCTCACTGTGGCTTCTCTACGCACG
TCAAGTCTGTTCTAGAGAAACACATGGACTTGCACAGTGAAGACCGCCAA
CACAAGTGTCCTCAGTGTACCTATGGCTTCAAGGAGAGCAACGCCCTCAA
GAGACATATGGAGGAAGTGCACGCAGAAAAGCCCCTTCACCACTGCAGCA
TGTGTAGTTACAGCTGTAACAACCACATCCGACTGGAGGAGCACGAAATG
GCTCATCTGGAGGCCAGGTACAACTGTAACATCTGCGAATTCAAATCCAA
GTGGAGGGCATCCTTGTTCCGACATTACAAGGTGGTACACAACATTCAGA
AACCTGTGGTGAAGCTAGCCAAGGTATACCCAGCCTCAGATTCAAACATC
ATCCCATCCTCGAGGTCTTTACAGACAGTAGTGGCTTCCGAAGCAACTGT
CACCATACCGGTGACATCCACAGGTGAGGTCGATGGCGCAACGGCAATCC
TGATGGGACTCGCTTACGGAGCTGGGAGCTCCAATAATATAGAGGAATAT
GTTAAGACTGTTGATTGGAGATAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113352-exon-Sc0000228-1564993656:352463..352464 | BlTCONS00113352-exon-Sc0000228-1564993656:352463..352464 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:353130..353354 | BlTCONS00113352-exon-Sc0000228-1564993656:353130..353354 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:353868..353999 | BlTCONS00113352-exon-Sc0000228-1564993656:353868..353999 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:354660..354786 | BlTCONS00113352-exon-Sc0000228-1564993656:354660..354786 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:355872..356072 | BlTCONS00113352-exon-Sc0000228-1564993656:355872..356072 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:356583..356633 | BlTCONS00113352-exon-Sc0000228-1564993656:356583..356633 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:357131..357312 | BlTCONS00113352-exon-Sc0000228-1564993656:357131..357312 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:357643..357751 | BlTCONS00113352-exon-Sc0000228-1564993656:357643..357751 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:358277..358431 | BlTCONS00113352-exon-Sc0000228-1564993656:358277..358431 | Branchiostoma lanceolatum | exon |
| BlTCONS00113352-exon-Sc0000228-1564993656:359159..360003 | BlTCONS00113352-exon-Sc0000228-1564993656:359159..360003 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000228 | genome | Sc0000228:352463..360003 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF055635 |
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