BlTCONS00113306 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113306
Unique NameBlTCONS00113306
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000228:154532..156457+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113306 ID=BlTCONS00113306|Name=BlTCONS00113306|organism=Branchiostoma lanceolatum|type=mRNA|length=1926bp|location=Sequence derived from alignment at Sc0000228:154532..156457+ (Branchiostoma lanceolatum)
CGATGACTTATAACCTTTGTAGAAATAGTGGTCCAATGTGTTCTGCTGCA
GCAGTGGCCTCTCTCCACTAGCTGTGGTCTATTCTTCTCGAGCTTCCTTA
GCTCCCATAGTTTCCTTTCTGACCGTAACGGTTATAACCTTTGAACGATC
AACATACCACCTCTTCTCGCTTTGCTCGGGGTAGTAGTTTACAGCCGGTG
GTTCCAAAAATACGTTTAACCATAATCACGGTAACAGTAAGTGGAAAGGA
AATGTCGATTCTAGTCGTTATACTTGTGTTCGTGCTTCACATCACGGTGA
GGCTTGTGGAGGCACAACAACCATGCTGCACACCGCTACAGTGGCAGGCA
ACACTGGGGGTCACGTACGGAGTGGTATGTTAGCCTCCGTTGCAGGCCTC
CCCGCGGCGATTTTTCAACTTATCGGGGCTGTGTGTATCTGCTTGGCGCG
CCGTATCGCCGTGGGGAGGTCTGCAACACGGAGGCTAGTGGTATGTAAAC
CATAGCGGTTGATACGCATTTAGACTAGAGAGGTCACATGTTATATTGTT
CTTCAATATTTGTTCGTCGTTATCCTGTTACTTGCAATTATCCTCCGGGC
GCGCCAACATAATGAACTTTATTGCATATATCATGATATAAGTGGGCGGT
ACTGTGAGAACAACATGTGCATTTTCTCTCCATTTACTAAGGATTCGGCA
AGCATGCATCGTCGATGGTTTGAATTCTAAGTGTATAACTCTAAAGCTAA
TGCGTAACGAATAAGGTGACACAATCTATTATAATGCACAGCTTTGGGAT
GCAGTTAGATGTTTCCTTCTCTTCCAATCTATTGTTGGATTCTTGGTTCA
CTTGCTTTATTTGACTAGTCGATCTGGACACCTCTTTTTACGTTGTAACA
TTTTGTTTTCATACTTTTGGACTTTGAGTCATCCACAACAAGCAAACAAA
ACGTTGGCGATAGCTAATTACTCACTGGATAAGGGAACAATACATATTTT
CCTTGACTGTCTACACAGGCCTTTATTGACAATAACGCTGCCCAAGCGGT
TATAAACGTAACTGCAGAGTTTGCCTTCGATTGGAACAAGCGCACGACAG
CGGTATGGACGACGGGAACTCAGTACAACCCTCTCCTTCCCAAACCTCAA
CCTGTCAACACTGCCTACATCTGGGACCACGCAACGGTTAGTGAATGTGA
TCACTTTAAGTACAGTCAAACTTGTACTAGTGACCATCTTAAAAATAAGC
GCAGTCAAACTTGTACAAGGGTCGACCGCTGATGAATGCAGTCAAATATG
TACAAGAGACCACCTCTGCACAAGAACCACCTGCACGCTATGGCCGCTTT
TTGGTGCTTACACGTATTTTCCCCATTGATTCAAACATTGAGAAGCCTGT
CTATAGTGGCTAACTGTCTACTGCGACCATTTTCTGGAAGCCCCTTGAGT
AGTCGTTAAAGATATGTTATAGCGCAAGTGCTTATATATCTGAAGGAAAA
TGCGTTCCTCTTGCCAACAAGGCCAAGGAGGAATGACATTTATCTGAGTT
CAAGATTTCATCTGCTTGTTATCTTCAGGGAGTAATGTGGACAATCGACA
CGACATCACAAAGCTGCCAGCCCAGCGACCTGAATAAAGGACCGGTACCC
AGGCTGTGTGTTGCAGGCATGTCACAAGGAATCATTATCATAATAACAGT
TACTGTAATAGCACAGATACCAAAGAAAAGTTTATGAAACAGTTTGATAA
AAGTGAGAAAGACTGGGACAAAGGTTTAAACTTTCTAATGTGCCCCTTTC
ACAGATGACGCCGTCCATGTCGCTACCGCACATCTGGGTCCAAGTCAGAT
GGTCTGCGATATTTTCAAGTTCAAGTGGCCGGTAGGGGAGGGTACCCCTG
CAGCTGCCGCGGCTACGGTAGCCAGG

Coding sequence (CDS) from alignment at Sc0000228:154532..156457+

>BlTCONS00113306 ID=BlTCONS00113306|Name=BlTCONS00113306|organism=Branchiostoma lanceolatum|type=CDS|length=501bp|location=Sequence derived from alignment at Sc0000228:154532..156457+ (Branchiostoma lanceolatum)
ATGTCGATTCTAGTCGTTATACTTGTGTTCGTGCTTCACATCACGGTGAG
GCTTGTGGAGGCACAACAACCATGCTGCACACCGCTACAGTGGCAGGCAA
CACTGGGGGTCACGTACGGAGTGGCCTTTATTGACAATAACGCTGCCCAA
GCGGTTATAAACGTAACTGCAGAGTTTGCCTTCGATTGGAACAAGCGCAC
GACAGCGGTATGGACGACGGGAACTCAGTACAACCCTCTCCTTCCCAAAC
CTCAACCTGTCAACACTGCCTACATCTGGGACCACGCAACGGGAGTAATG
TGGACAATCGACACGACATCACAAAGCTGCCAGCCCAGCGACCTGAATAA
AGGACCGGTACCCAGGCTGTGTGTTGCAGATGACGCCGTCCATGTCGCTA
CCGCACATCTGGGTCCAAGTCAGATGGTCTGCGATATTTTCAAGTTCAAG
TGGCCGGTAGGGGAGGGTACCCCTGCAGCTGCCGCGGCTACGGTAGCCAG
G
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113306BlTCONS00113306-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113306-exon-Sc0000228-1564993656:154532..154905BlTCONS00113306-exon-Sc0000228-1564993656:154532..154905Branchiostoma lanceolatumexon
BlTCONS00113306-exon-Sc0000228-1564993656:155550..155717BlTCONS00113306-exon-Sc0000228-1564993656:155550..155717Branchiostoma lanceolatumexon
BlTCONS00113306-exon-Sc0000228-1564993656:156110..156197BlTCONS00113306-exon-Sc0000228-1564993656:156110..156197Branchiostoma lanceolatumexon
BlTCONS00113306-exon-Sc0000228-1564993656:156336..156457BlTCONS00113306-exon-Sc0000228-1564993656:156336..156457Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000228genomeSc0000228:154532..156457 +
Properties
Property NameValue
GeneIDBlCUFF055612