BlTCONS00113303 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113303
Unique NameBlTCONS00113303
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000228:150909..153098+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113303 ID=BlTCONS00113303|Name=BlTCONS00113303|organism=Branchiostoma lanceolatum|type=mRNA|length=2190bp|location=Sequence derived from alignment at Sc0000228:150909..153098+ (Branchiostoma lanceolatum)
GTTCCAAACGTCGGTAATAGACCTAACCGCTGTGGTAGAGCAGATATGGC
GATTCTATCGGTTCTACTTGTGTTCGTGCTTCACATCACGGTGGGACTTG
TGGAGGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAACACTG
GGGGTCACATATGGAATGGTACATAAAACCTTACGATCAATACGTGAGTG
GGCAGCACACTGGGAACAATATGTACTTTTCCTTCCATTAACTATTTTTT
TTGCAAGCATGCTCCACCAATGGTTTACATTCCGGATGTATAACCCTAGA
GCTAACCTAACTGATAATAGGGTATATAGTTTGCTATAACGAAACGGCTT
TGGGATGCAGCTCGATATGTTTCCTTATTTTTCATTCTCTTGTTAGACGC
TTNCATGTAACTGATAATAGGGTATATAGTTTGCTATAACGAAACGGCTT
TGGGATGCAGCTCGATATGTTTCCTTATTTTTCATTCTCTTGTTAGACGC
TTTGTGCACGGCTTTGATTTGATTAGTAGAAGTTAGAACACATTGAGTTA
ATCAAGACCCTTCTGAAATTCCCGGTACTAATAATATCTGTCTAGTAAAC
AATACGCCTCTTTTTAGATCTTTAACGTTTTGTTTCCGTACTTTTGGACC
TTGGGTTGTCCTCAAAGAGCAAACAAAACACTGGCTATAGTCACTGACGT
TTTCCATGGCTGATGTGTGCCCAGGGCTGGATTGACAGTAATACTGCCCA
AGCTGTTAGGAACCTAACTGCAGAGTTTGCCTTCGACTGGAATAAACGCA
CGGCAGCGATGTGGATGACGGGAACTCAGTACAGCCCTCTCGTTCCCAAA
CCACAACCAGTCCACAATGCCTACATCTGGGACCACGCAACGGTCAGTGC
ATATGTTGATAAGTACAATCAAACCTGTACTAGGGACCACCTCTGTGGTA
AAGCTCAGTCAAACCTGCACTAGGGACCGCCTCTGTAATGCAGTCAAATC
TGTACTAGTGACCATCTCTGCACAAGGACACTGTGGCTAGTTTTGCTGAT
TACTTTTTTCTCATTAATCTAAGTACCAAGAGCCCCATTTATAATGGCTA
CTGCGATCATTTTCTCCAAGTACCATGGATGGTCGCTTTTTTGAGACAGG
TTTGACTGTATGATGTAAGAGTTTAATAGGTACATGAAGAAAATACTACC
GGAAAAACAGTCTTCGTGAGGTGCGTTTCCTTTGCCAGCAGGGGAAAAAT
GACATTCACATTTAACTTGGGTCAACATTTTATCGGCTTGTTCCCAGGGA
GTAATGTGGACCATCGACCTGACCAGTCAAAGCTGCCAGCACAGCGAGCT
GAGTAAAGGTCCTGTGTCCAAGCTGTGCGTTGCAGGTATGTCACAACAAA
TCGTCATCATGCTAACAGATTATTATCACAGATACGAAAGAAAAGTTGAT
GGAGCAAACCTGCTCTACAAATAGAGGTTGTTGGGAAAAATTGTGACCTT
TTTGTGATATGCCCCGTTTTTGCTCACCCTCGTCGTTGGGCGGAAAAAGG
GGCATATACATGTAGTAAGGTCACCATTTCCCCCATCCTCTGCTTGGAGA
GTAGAATAGATTTTCAAAAAGTGAGAAAGACTGGGACAAAAGTGTAAACG
TTCTAATGTACTCCTTCCACAGATGACGCCGTCCATGTCGNACAAAAGTT
TAAACGTTCTAATGTACTCCTTCCACAGATGACGCCGTCCATGTCGCCAC
CGCACAACTGGGTCCAAGTCAGATGGTCTGCGATATTTTCAAGTTCAAGT
GGCCGGTAGGGGAGGGTACCCCTGCAGCTGCCGCGGCTACTGTGGCGAGG
AATGGTACGGCTAAGTCGTAAATTTATGCAGTTTTCGCGAGATATGTTTA
TTTTGATGATTATGGAAGCAAACAAGTGACCTTAAACTGTTTTGAAAGAA
AATCTGCTTTCAGTGACCTGGACATATTATTGCAAGATCTCAAACGAACT
TTTAGATGATTATATCACTGTACGCACTATTTCCAGGCTGCACGCCGGTA
AGGATGTCTATAGTGGACGGTAGCCCAACCAGCGGCGGTTTCTTCTTTGA
CGCCCGGGTTTACAACATGAAAGAAGGCATACACAACACCAGTCTACTGT
CTCCCCCTGAGTACTGCACACTTGACAACAATAAGGTATG

Coding sequence (CDS) from alignment at Sc0000228:150909..153098+

>BlTCONS00113303 ID=BlTCONS00113303|Name=BlTCONS00113303|organism=Branchiostoma lanceolatum|type=CDS|length=417bp|location=Sequence derived from alignment at Sc0000228:150909..153098+ (Branchiostoma lanceolatum)
GTTCCAAACGTCGGTAATAGACCTAACCGCTGTGGTAGAGCAGATATGGC
GATTCTATCGGTTCTACTTGTGTTCGTGCTTCACATCACGGTGGGACTTG
TGGAGGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAACACTG
GGGGTCACATATGGAATGGGCTGGATTGACAGTAATACTGCCCAAGCTGT
TAGGAACCTAACTGCAGAGTTTGCCTTCGACTGGAATAAACGCACGGCAG
CGATGTGGATGACGGGAACTCAGTACAGCCCTCTCGTTCCCAAACCACAA
CCAGTCCACAATGCCTACATCTGGGACCACGCAACGATGACGCCGTCCAT
GTCGCCACCGCACAACTGGGTCCAAGTCAGATGGTCTGCGATATTTTCAA
GTTCAAGTGGCCGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113303BlTCONS00113303-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113303-exon-Sc0000228-1564993656:150909..151076BlTCONS00113303-exon-Sc0000228-1564993656:150909..151076Branchiostoma lanceolatumexon
BlTCONS00113303-exon-Sc0000228-1564993656:151633..151800BlTCONS00113303-exon-Sc0000228-1564993656:151633..151800Branchiostoma lanceolatumexon
BlTCONS00113303-exon-Sc0000228-1564993656:152637..152762BlTCONS00113303-exon-Sc0000228-1564993656:152637..152762Branchiostoma lanceolatumexon
BlTCONS00113303-exon-Sc0000228-1564993656:152945..153098BlTCONS00113303-exon-Sc0000228-1564993656:152945..153098Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000228genomeSc0000228:150909..153098 +
Properties
Property NameValue
GeneIDBlCUFF055611