BlTCONS00113298 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113298
Unique NameBlTCONS00113298
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000228:142498..146911+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113298 ID=BlTCONS00113298|Name=BlTCONS00113298|organism=Branchiostoma lanceolatum|type=mRNA|length=4414bp|location=Sequence derived from alignment at Sc0000228:142498..146911+ (Branchiostoma lanceolatum)
ATACACTACCAGTCTACTGTCTCCTCCTGACTACTGCACACACGGCAACA
ATAAGGTAATGCCATAATCACTACAGACAGCCATGTGAAATTCTATATGG
TAGTGGTGAGAAGAAAATTCTCTCGAGTTCATGCCAACTTTTCTTTGACG
AATTCATCGTGAGGTTGTGCTTGTTACGTTGAATGCCACACTAAACAAGC
GTATCACATCTGATTCCGTTATATTACAATCAGACGTGTTCATTGTCTGA
TCAAACTATACCGTTTTATGACAGCAATGGTCGTCTCAGTGAACGCTTAC
AATATATCTTTCCTGTTTTACAGGCTACAGCACACAAGCCACCTGTCTCA
TTGGCGAAACTTTTCTCACCTCTATGAGAGACCACCGACGTCTAGTACGA
TCAGTGTGAACAGATCGGCATCATCTGGATGTTCTAGGAATGACGATCAA
GCAAAAAAACTCACACAGTGTTTGAACTAAGATCAGACCTGAATCCTTTG
TACCCATGTCATGGTTCCATTCTTGTTCTTTTCTGGTCTTGATTTCTGTT
TCTCAAATGCTTGTTTCACGTGGAGTTATGAGGACTTGCATGCTTTCATT
CATGACATCAGCTTGATACCGAATTGTTGTCAGTCTGTTTTTCTTGAGAA
CTCTCAATTTGAAAGCAGTTAATACTTCTTTGTAGGCAAGCGACTTGTAC
CTATTATGGTGCAGACGTCCACAGTGGTGACATTTTGTGATGTATCCTTT
CCATTTAGGTACTCACATCTACTAACACAAGTCCGACAGGTCACATAAAA
CTGTATACATATCGATCCGCTACCGTGACCCTGAAAACATACGTCTAATC
AGACTCCTCCTCTAGAAGAGACCATGTCACCCACATTACCTGATGACCTT
ATAACCTTTGTATGGTCAACAAACTACCTCTATATGCACACTCAGCATAG
CCTATTTATTTTGCCGTCGGTGGTTCCAAAAGTCGGTACCCCTAACCGCT
GTGGTAGAACAGACATGGCGATTCTATCGGTTCTACTTGTGTTCGTGCTT
CACATTACGGTGGGACTTGTGGAGGCACAACAGCCATGCTGCACACCGCT
ACAGTGGCAGGCAACACTGGGGGTCACATACGGACAGGTGCACAGAACGT
TACAGTCAATACGTGGGTGGGCGGTACTGTGGGAACAATATGTACATTTC
CATCCATTCACTACTAAGGGTCTGGCAAGCCAATGGGTTAGACTCTGGGT
GTACAACCCTATAGCTGACACGTAATTGATAAAGGAATACGGTCTGTTAT
AACGAAACAGCTTTGGGCTGTACTGCTGCAGTTTGATGTTTCCTTGTCTT
CCATTCTCTTGTTAGACTTTTTGTTCACGACTTTGATCTAATAAGTACTA
GTAGAACGCGTACATTTAGAAATTTCCGGGACTGGTACAATACTAGTAAA
AATACGTCTCTTTTTAGGCCATTTATCGTTTTGTTTCCGTACTTTTGAAC
TTTGAGTCATCCTCAACATGCAAACAAAACATTGGGGATACTCACTGACG
TTTTTCATGGCATAGATCACGAACTTTGAGTGATTTGACTGGTAAAACAT
AGAGTCAATCAGGATCCAATTGAAATTTCCAAGGGTATGATGTACACCCC
TCTTGAAGTTTAAAGTTGATAAATGTTTTGTTTCCCTACTTTGATTTTGG
ACTTTGATTCATCCTCAACAAGAAAACGAAAACTGGTGATAGTTAATAAC
TCACTGGAACAACAAATGTTTTCCATGTATGTTGTTTACACAGGCCTTTA
TTGACAGTAATACTGCCCAAGCAGTTATAAACGTAACTGCAGAGTTCGCC
TTCGACTGGAACAAGCGCACGACAGCGATGTGGATGACAGGTACTCAGTA
CAGCCCTCTCGTTCCCAAACCTCAACCCATTCACACTGCCTACATCTGGG
ACCACGCGACGGTTAGTGAATATGGAGCCAAACCTGTACCAGTGATTACC
TTTGTAACAACCTCAGTTAAACCTGTACTAGTGACCATCTCTGTAATAGG
CACAGTCAAACCTGTACTAGTGACCACCTCTGTAATAGGCACAGTCAAAC
CTGTACTAGTGACCACCTCTGCAATAGGCAGTGTCAACCCTGTACTAGTG
GCGGTAACGTGGCCACTGGTACAGATTTGACTGTGCTTATTACAGAGGTG
GTCTGACCGCCTCTGTAATAAACACAGTCAAATCTGTACTAGTGACCACC
TCTGCAATAAGCACAGTCAAATCTGTTATAGGGGCCACCTAACGTTAGAT
ATGGAAAGAAACAACTATCGGAAAGTCTTCGCAAGATATGAGTTTTCTTT
GCCAGCAAAATGACATTTAACTAGGGTCAACAATTTATCGGCTTGTTCTC
AGGGAGTAATGTGGACCATCGACCTGACGAGACAAAGCTGCCAGCACAGC
GAGCTGAGTAAAGGTCCTGTGTCCAAGCTGTGCGTTGCGGGTATGTCACA
ACAAATCGTTATTAAACTAAGGCCATATTGCGCCGAAAGTAGTTACTCCT
TTTGGCGTATCTAAATACCTGGATGTCTAACCTCCATCGACGTATTTTAA
TATTGCCTTAAAAGGCCATGTTGATTTGATTATATGGACGACATCCTCTG
GGAACGCCAAAACTGATGCGAGCGTGCGAATGAAAAAAAGCTTCGGCCCA
AATAAAAAGTTGCCTTTATTATGAAAAACTACGTGGTCAGAAAGGTTGAG
CAAGTGACTAGAAACACAGAGCATGGTATAGCGCATAAAAGATTCTTCAT
TTACATTTCTTCACCACATCTTCTTCTTGGAATTAATTTTGTCATATGCA
TTCTACGACATTACTACCGTTTTCCTTTTTTTTTGCAATTGACGGCATAT
ATTTGATAATTTCCAGCATTTTACAGTATTGTCGAAAACTTGCTTTTTTG
TGGAAACGGACAAAAATTTAATGCACGCGCGGATGTCATCCATATACTGA
AATAATCCAGTCAACATGGCCCAACAGTTGATTATCACAGAGACGAAAGA
AAAGTTGATGGAGTAGATCGACAAATAATGTAGCTTGGTCCCAGTCTGCA
CGGGTCGGCTTGGGTGTGTTTTACGGGCCAAGTCTGCTAAATTGACCCGT
TTCTGTCAGTCTGTCTAAGCTGCCATATAGAGTTTAGCAGCCGTCGTAGT
TCTGCCGCCACTGTAGAGACCAGGAAGGACCTAACTACCCCTCGGGCGGG
CTAATCTGTCTGGGCTGGTGGGCATTACTCCCAGCCCCGCAGAGAAACCG
GGGAGCTTCCGACGGTATGGTTGCCAGGTTACAAATAGTGAGAAAGTCTG
GGACAAAAGTTTAAACGTTCTGATGTGCTCCTTCCAAGATGACGCCGTCC
ATGTCGCTACCGCACATCTTGGTCCAAGTCAGATGGTCTGCGACATTTTC
AAGTTCAAGTGGCCGGTGGGTGAGGGTACTGCAGCTGCTGTGGCTACTGT
GGCGAGGAAAGGTATGGCATGTCGTGAATTCAGTTAACAGTTTTCTGGAA
ATATCTTTATTGTGATGATCATGGAAACAAACGTTAACCATTGACCTTAC
ACTGTTTTAAAAGACCTTGACCTTGTTGACACATTATAGTTACTAATGTT
AATGATAAGGATTTGCAGCGTTATTATGGCCGTAAGGAATGTGTAAAATA
ACACTGTTATTGCAAAATTTCATACGAAATTCCAGATGATTCTGTCACAG
TGGAGTGTATTTCCAGGTTGTACACCGGTGAGGATGTCCATACTGGACGG
TAGCCCAACCAGCGGAGGTATCTTCTTTGACGCCCGGGTTTACAACATGA
AGGAAGGGATACACAACACCAGTCTACTGTCTCCCCCTGAGTACTGCGCC
CACAGCAACAATGTAATGTCATAATGCCACAATCACTTTAGATGGTCATG
GAAAATAATCTATGTGGTAGTGGGCAGGTGAAAGTTCTCTTGAGTTCATA
CCACTGACTTTTATTTTTGAAGAATTGATCGTGAGATTGTGCTTTGCTAT
CCTTGTTACGTTGAATGCCAGTCTTTGTGATTAGAAAATTGCAATTGTTT
ACATCTAGCCACACTACACAGGCGTATCACATCTGATCCATCTTATAAAT
CAAAGGTGTTCAACTTCTTATCAAATTATACCGTTTTATGACAGCAGTGA
TGTGGTCGTCTACGAAAACGCTTATCATATATATTTCCTGTCTTACAGAC
TACAGCACACAAGCCACCTCCCTCCTTGGTGAAGCTTTTCTCAAGTCTGT
GAGAGACCATCGACGTCTAGCACGATCAGTCACGGTGAACAGGAATCTTG
GTGTTCTAGGAATGACAATCAGGCAAAGACATAACACAGTGTTTTAATAA
AGATCAGACCGGAA

Coding sequence (CDS) from alignment at Sc0000228:142498..146911+

>BlTCONS00113298 ID=BlTCONS00113298|Name=BlTCONS00113298|organism=Branchiostoma lanceolatum|type=CDS|length=843bp|location=Sequence derived from alignment at Sc0000228:142498..146911+ (Branchiostoma lanceolatum)
ATGTCACCCACATTACCTGATGACCTTATAACCTTTGTATGGTCAACAAA
CTACCTCTATATGCACACTCAGCATAGCCTATTTATTTTGCCGTCGGTGG
TTCCAAAAGTCGGTACCCCTAACCGCTGTGGTAGAACAGACATGGCGATT
CTATCGGTTCTACTTGTGTTCGTGCTTCACATTACGGTGGGACTTGTGGA
GGCACAACAGCCATGCTGCACACCGCTACAGTGGCAGGCAACACTGGGGG
TCACATACGGACAGGCCTTTATTGACAGTAATACTGCCCAAGCAGTTATA
AACGTAACTGCAGAGTTCGCCTTCGACTGGAACAAGCGCACGACAGCGAT
GTGGATGACAGGTACTCAGTACAGCCCTCTCGTTCCCAAACCTCAACCCA
TTCACACTGCCTACATCTGGGACCACGCGACGGGAGTAATGTGGACCATC
GACCTGACGAGACAAAGCTGCCAGCACAGCGAGCTGAGTAAAGGTCCTGT
GTCCAAGCTGTGCGTTGCGGATGACGCCGTCCATGTCGCTACCGCACATC
TTGGTCCAAGTCAGATGGTCTGCGACATTTTCAAGTTCAAGTGGCCGGTG
GGTGAGGGTACTGCAGCTGCTGTGGCTACTGTGGCGAGGAAAGGTTGTAC
ACCGGTGAGGATGTCCATACTGGACGGTAGCCCAACCAGCGGAGGTATCT
TCTTTGACGCCCGGGTTTACAACATGAAGGAAGGGATACACAACACCAGT
CTACTGTCTCCCCCTGAGTACTGCGCCCACAGCAACAATACTACAGCACA
CAAGCCACCTCCCTCCTTGGTGAAGCTTTTCTCAAGTCTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113298BlTCONS00113298-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113298-exon-Sc0000228-1564993656:142498..142552BlTCONS00113298-exon-Sc0000228-1564993656:142498..142552Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:142821..143634BlTCONS00113298-exon-Sc0000228-1564993656:142821..143634Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:144291..144458BlTCONS00113298-exon-Sc0000228-1564993656:144291..144458Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:144900..144987BlTCONS00113298-exon-Sc0000228-1564993656:144900..144987Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:145886..146008BlTCONS00113298-exon-Sc0000228-1564993656:145886..146008Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:146264..146409BlTCONS00113298-exon-Sc0000228-1564993656:146264..146409Branchiostoma lanceolatumexon
BlTCONS00113298-exon-Sc0000228-1564993656:146746..146911BlTCONS00113298-exon-Sc0000228-1564993656:146746..146911Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000228genomeSc0000228:142498..146911 +
Properties
Property NameValue
GeneIDBlCUFF055611