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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000226:210322..218839+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113016 ID=BlTCONS00113016|Name=BlTCONS00113016|organism=Branchiostoma lanceolatum|type=mRNA|length=8518bp|location=Sequence derived from alignment at Sc0000226:210322..218839+ (Branchiostoma lanceolatum)
ATCAGACCTAGGAAGAGTGCAGGCCAACCGTTTCTAACTAGAACTTCATC
GCCGACAGACGTTGAAGATGCGCCCGCTGGTTTCTGTGCTGGCCGTCTAC
CTGGCGTTCCTCGTGGCTGCCGTGACGTGTGCGCCAGCAGCAGACGATGA
TGACGGTAAATGATTTCTTCCATTTTTCTTGCACACGTTTCTTAAGTTTC
CTAAGCAACAAAAACATAGATGTGCGTGGAACTCTTCGTCAAGGCAGCAC
CTTCTTTTTTACTTGCCGACGATGACGGTATGAATCTCGTCTTCTGATCT
CTAATAAGTCACTTTCCGAGAAACAAAAAGTTTTTGTAGCGTGTTTGATT
TTTATCAAAGACAGAGTATTTTATTGTATCTCGGAGTGGGAAGCTCGAGA
GACATCGGGGTAAGTTGGAAATATTATGTTTGACTTCAGTACTTGTTTTT
TATGCTCGATATCAACTATATCTTAAGAATTCAATGGAGAGTTATTACTT
CCTATTGTCTACAACATTTAATTTGACCTCGACATTGATTTTGCTTCAAT
AAATTAGATTTAATAAAGTTAGAATTAGAGCCTTATGGTGCCGTTTTCAA
CATATAGCACATTTAGCTATTATCAACATTGACAGAATCTTTCGTTTAGT
ACGACTGAGCTAGCTGTCTTGGTTTTATGCAGTTTATTGTTTCCATGTAC
TTTTGGGTTTATCTGGACTTATGTCATATTATCTTGAACAAAGCATTGAA
AAAGCGCAGGTGCGATAGTTTGTCTCAAGGATTGAAAGCCGTGAAAAGTG
AAAATGTTTCAATAGTTTTGGATGTTACCAGCTAGAAAACTATGAAAGGA
GATGCATTTTGTCATCTTATCTTTTTACGTCACTTTCCTTAAGAAAAGGC
GGAGGTGCGATATTTTGCCTCAAGGATTTTCAGCCCCGAAAAGTGAAATG
TTTCAATAGTTCTGGATATTACCAGCTAGAAAACTATGAAAGGAGACAAA
TGCTGTCATCTGATCTTTAGGTCACTATCCTTTGAGGCATTCATGGGGTA
GTAATTTGCCTCAAAACACGCGGGGGATTTAAATGAAGACAACAATCGTC
GTGTGGCTGTTTGTTTCAGTGTGTGTGTGTGTGCTGTGTTTCTCCCTCTG
TGTTCCTCTCTCCCCCTCTGTGTGTGTTTCTCTCTATGCGTGTTTCTCTC
TGTGTTTCTCTCTCTCTCTCTCTGTTCTTTTTCGCTGGCAGAAAAATGCA
GACGTACGTTTGGTCACAAGAAAAGAGGCGATGCGAGATATTGACTGATC
ACACAAGGCTGTGCAATTGATCATTTGCCGCCTTTTTTATAGACAACGCA
GAAGTGACTATCCCGGATGCCGCTATGGAAACTCCGTCGCTGCCAGAGGA
TGTGGAGAAGATCCTGACGGATGCGAATATCCAGAGGTACCTGGGTGAAG
CGGAACCAGAGGATCGCAAGAAGAGAGAGGTGAAGTCGACATTTTCAGCA
TGTTGTATTCTATATCCATGTCATACCTGGGCCGCGAAAACGTTCGATAC
GGATGTTCCGGACCGGGTGATAACTTGAGTTATCACACGGGCTTTTACCT
TTATCACACGGGCTTCCATAGAATATTAGAGTCGCCTTAGAAACATCCGG
GGGTGTAAAACTGGAAGTATTCTGGCTAAGGCAATCTGTATGAAATTGAC
ATTTTCTTCCCCATGTTAGCACATCAGCATCATTGTTTTATACTTTGGGA
GTTTCGAGTGCGCCGGATGCGCCGCTGTTGGAATCGATGTTGTTATAATT
TTTCTCAACTGCTGGAGCATTTCGCATGGAAAAGTATTTTTTTAGGGTGA
TGGAGTATAACATAAATATATAACACAACACGTTGTATTCCGCATCACCC
TCGGTCCAGGCCCTCCCGCGGGTCGAATTGCCCTTCGGCCTTCGGTCGGG
CCGGTACCTCGGCCGATACGGAATACACCGTGTTGTATTCTAAAAATATC
TATGTCATACCTGGGGGGCGAAAACGTTCGATACCGGTGTTCCGCATCAT
GTGATAATTTGCCGTATCACACGGGGTTCTACTTTTATCACACGGGCTTC
TGTAGAATATTTAGAATGTATTTAGAGTGCGGATGCGCCGCTGTTTATTG
GATACTGGATAATGGATTCGGTCGTTGGAATTGCGGCTGCTTCAATTATT
TTGTTCGAGAACACCAACTTTTCTCAATGTCTGGCGCATTTCGCATTGAA
TTGCGTGTTTTCTCGGGCGATTCGACCCTCGGTCCTGGCCCTCCCGTGGG
TCGAATCGCCCTCCGGCCTTCGGGCGATACGACCCGCGGTCGGGCTAGTA
CCTCGGCCGATACGGAATACACCGTGTTGTATTATGAAAATATATATCAT
ACCCAGGCCGCGATAAATATATTATACATCACGGTGTATTCCGCATCGCC
CGAGGTACCGGCCCGACCGCGGGTCGTATCTTCGGCCGGAGAGCGATTCG
ACCCGCGGGAGGGCCGGGACCGAGGGTGTGATGCGGAATACACCGTGTTG
TATTTTATTTATGTCATACCCACCCGAAAAAAAAAAACATATTTCGTGTT
CTCTGCAAACTGTGGTCACGTTTTTTTTTGGGGGGGGGTGTGCTATATAG
CTGACTTGTTTTCTCTCTATGTCCAAACCCAGACGCATACCGCAGACGGC
TGTGAGGACCTGTACCACGACAAGTGTGCCTGTCGGTACTGGGCAGCTGA
CGGGGCCTGCGACTATTCCCATCAGTTCATGGGCATCTTCTGCCAAAAGT
CGTGTGGGCTGTGTCCTCCGAGCAATGAAGGTAAGGGCTCAGTCACATAT
GTCGCACGATCGNTCGGTCACATATGTCGTACGACCGCCGTAAGATCAGA
GTACGATCGCAAACCGAGGTCATTCTTGGGATAGCTGTGGCCTTGTCCTT
CAGAATTAAGCTGTCGTCCTGGTCGGCGGTTGGTTCTGTCACAGCCTGCT
TGAATGTTCTACAATTATCAAAATCTTAACGACGACCTAAGGCGAGTGAG
ACCGCGCCGTAACTTACACTCGCGCGCACACGTCTGTCTCGCAAACTCGT
TGTAAGAAGTCTTCCTGTACGTCAATAGTTTCATTTTTATGAGGGACTGA
GTTGATTTCAAGTTGACCACACCCTTGGAAGTTTGAACCTCGTCGAACAC
TTGCGGATTGGAAACATTGAGATAGCGAGCTTACAGTCTAATGAAGGATT
CTATAAGATACCGGTCCTTTTTTTAAATGAATTTAAAGCTAAATGTATAC
ATTTCATATCAAAGTTTATAACTGGTTATTGTTTCTAATTCTTTGTCACA
GATGAAGTGTGTGCGGATATCTTACTCCAACCCGTCTGTGACCACGTCAT
CAGCTTGGGGAGGGCTCTGAAGGGGTTGGCTGAAGTATGCTGCAAGAACA
GCTCCGGGCTTTGCCCTGGTAAGGCCCCGTTTTGATCCGACAGACCAACC
TGATAAAAAAATCATTCGTCACTAAAATCATTGAGAGATAATTCTGAGAT
CATTGAAATATTTTGCAGATTATTGATCGCTCACAGAATGATTACCAAGA
GATCTATCAATTTGTTGATCTCGTCATATTTGTGAAATCTTCTTGTTCTT
ACCTTGCAGTCGCATTCATGACATCTCGATGATATGTGGATTGCGTGTGT
CGTGATACTAGTAGTACCGTGTTTTGCTCTTGTTGTCAAATTTCATTTCG
GCTTATAGGATTCCCGATTATCAAATATCGATTCATAATCCAGACGGTCA
AGCACATTGCAACCTTATTTACATCTATAACTGATTATGTACATGTAGCT
ACATTAGACTTATAAACGTCGAGCACAGTTTCCTATAATCTACATTAACA
TTAATCCACTGGGTTACATAAATTCGCCACTTTGAAAAAAAACAGTGTGT
TTGATAGATCTCTAGTGCAGCACCCCCAGGTATGCACAGTTTAGATATAC
AGTAGTGCATTATACTGGGGAACGTTGGGTTGGAGATCTGTTTGGACGTC
TCTTTTCATGGTGGCGGAATTATGTACCCTGGTAGAATTATGTTAGTAGA
TGCTAACTTAAAAAAGAATTCAGATTGTCTAGCGATCGGTGAATGGGGCT
TATTTCTCCTGCTCGAGCTCTAAGAGTGGTAGTTTTACATGTACCGACAT
CAAAATAACACGTTTTTCTTCGTTTTGCAGTGATAGACCCAAATGAGGAC
GGTAAGCTGGATCTTTCAAGTATTTTCATGAATATGAGACATATACATGT
AGTTAACACAACGGTATTGTATTTCCAGTGAACAGTTGCAAAGTTGAACT
GTACATGTTATGTAATTTCCAACACACAAAAAACTGGACGTGCCCAAATT
TTCCACTGTCNTATTTCCTGTGAACAGTTGCAAAGTTGAACTGTACATGT
TATGTAATTTCCAACACACAAAAAACTGGACGTGCCCAAATTTTCCACTG
TCCAACTCCAGTCTATGTCAAGCAATCCGCCGCTTCTTTGACATCACGTT
ATGCAGATTACAACACGTGACTTGGTGAGCAGTGGATCATGAGGTGCAGA
AAGTAATGGTTGTAAGTCCCTGATGTAAAGGGGTTTGGATACGACCAATT
TTTGTGTTTAGGAAATTACAGATCAACTTTGCCTTCAAAATGGTTTCTAC
AAACACAGATGAACTCTCAAATTGATTTCCTAGTCTTCTATTGGTGCTTT
TATTCATTTGATGTGGGTCTCTTCTTTACAAAATTGTTGTTGATTTGTCG
TTGTTGCTTTTAAAAACAGAAGTGTTCGAACAACACTGTTTGGAAGCCCA
CAACGCGAAGCGGGCCATTAAGAACGCACCTCCCATGGCCTGGGATCCGG
TGAGCATACCAGTGTTTGGTCCTATCTTCCAATTATTACATTCGGCTTCG
CCAAGGTAATGTTTTAGGTGTTGTTTGTATCTGTATCTATATAGCCGGTA
TAACCGCCATTAGGCGTAACACACCAGCTTCGCAGGCACGCGACGCGGCA
GCAGCTGGTCATATACACCAAACCGTCTGTTACACCTAGTCTTTGCATAT
CTGACTGCAACCATTCTTTAAAGCTACTTACTGAGGAAGCTCCTACAGTA
CTTGATGACAACGAGTTCCATTCTACTATGGTTCTCGGGAAATATGAATT
TTTGAACACATCAATCGTTGGATGATAACTCTGGTACTTAAAAGCATGAC
TATTTCTAGTCCTCTTCTGAGCTGGCATTAGTTTGTGTGCCTGTCTGCAT
GTGAACAGCATAACGAGAAGCTGTGGATGGATCCTGATGTCTACTTGGTA
TATGGGTAGGGGTCGGGATAACAGTCGATAATGGGCCCCCTTGTGGATTT
CTACGGTAATGCAGCTGAATTTCCGCTAAAAATTTTAGGGGGGGGATGAT
TTCCCTTTTTTCTTAGTCCAAAAGACCCCTGGACCCCCTGCTAGCTAACA
GCTTAAGTAGAATGGAGACTTTCCATTGGATTTAACCTAACTTTTAAGCA
ATGTTATCGCTAGAAAGCTTTGTGAGAAGATGGAAGGTTTGTTGTGAGGA
GTATTTTTCTGCAAATATCGATGTTGTGATTCCTGACACATTTTGACTGT
TTCATGGTACAGATGTGTGCACAAGAGGCGAGGAGGTACGCGAAGAAACT
GAAGGCCCGATATGACGCGAACCCGAGAACTTATCCACTGGAGCACTCCT
CACAGGCGGAGCGCACCTGGGCTGTGGAAGGGAAGAACGTGGTGTAAGTC
ACCATTGTTCGTTTGTTCGTTCGTTAAATGCATCCAGAGCATTTTATGAG
GCTTGAAACTTGAATAAAATAACTCCAATTTCTAGTCATCCCTACACATA
GTAAGTTTCAGTAACACTTTACCATTACATATCGACATTAAAGGAGCAAA
GATACGATGTCGTTGTGTGGTGAGAACTGATAGAATATCCAAGCCCTAAT
AGACTGATCCTGACTGTCCATCACAATTAGCATTTCGACCAATGAGAGGG
TGACTGCATGTCCGTCAAATATTTGCATTTTTATGTTTTTATTTTGCATT
TCTACGTTTTGACGGAGGTGGGCGGGGCTATGGTATCGGTCTATTTACAC
TAGGCACGTGAAACTAAAAGATCACCATGTACCTTTTAAGTTATTTTTGT
GGCGCTTTTGAGCACTTTTGATAAGAAATCCGCATACAAATGTGGTAAAC
AGTGGCATTGAATGTCAATTTCATACAAATTACAGCAACTAGAATATTTC
CAGTTTCAAACCTCATAAAATGCTCTGGGTGCCTTTAAGACCCTTGAAGT
GCCTAGTGACCCATCGGGTTTCAGTAGCAGGGTATATTTTCACACTGGAA
GGGGTTCCCCTTTAACATGATCGAGGCACCTTCTCAAACACGGGACCCAA
CATTTTCCCGAAAAAACGGGTGCAGCCCCAACCGAGATGTCCTGGCCGAA
GATAGAACCAGGGTCCCCTAGTTAGCAACTAATTGAAACCAGGATCTCAA
TTGTGAGGCTGCTACCAGTTGTCAGCTATAGGGACATCCCTGAGTCGCAG
ACAGAGATGATTGTATAGCCGGGTATATGGAACTTGTATATCACATAGCT
GAGAGCAACTTCAGTTCAGAGTTTAGTTGCAGAGGTGTAACCGCAGTCCA
ACGCACATGAGCTTACAGAAAATTTCTTATTGGGCAAAATAATTGAAAAA
CTGAAACCCTTTTATTAAGGTGTTGAAGCTAATTCGCACTGCTACACTGT
TTGCTTATGTCCTGCTAAAACGTTGTTACACAGAAGTTGCAACCGCCATC
CCCCACCTTAGCATAAAACAATAGGTTCAATGTATTGAGAGGATCATTCT
CATATTGTTGATGTGTGTTTTCTCCAGGCACGGAGAGAACCTGTACTGGA
CCTGGTCGGACGTCCCGGACTGTACTGGGAGCAGCATGTACAAAAACGCC
ATCGAGGCCTGGTATGACGAGGAGAAGTACTACAAGGCTTTCCGGAGGAA
TGGAAGAGGTGTTACCCGCAGTGGTATCAGGTTGTACGGCCACTATACTC
AGGTTTGTAAAGATTGGTTTTGTCCTACACATGTAGATTGCTGGCATTAC
TTGATTTCACTCTTCATTCTGACAGACAGACAGACAGAGAGACTTACAAA
CATGGATTGGTTGATTGACTTATTAATGGATGGATACAATTGTACATGTA
GACATTACACATCATAGATACATGTTCACACACACACACACACACACACA
CACACACACACTTGCGTGCATGCACACACAAACACTCCTAGCCAATGGTA
CAAAACGTCCATATTCCTTAGCCACGCATGTCTTGTCTTGAGTTGAGTTA
TGAAGATGTCACGAAACTTAAAAACCCTCTGCTGTTTCTTCAGATAATGT
GGAAGGAGACCGGCGCTGTCGGCTGTGGCAGGTCCGACAACAAACCCAAC
AACATCCTGGTCTGCTACTATCAGAAAGGTGGGAACGTCTACAGCACGCC
GGCGTTCAACAGAAATGTCCCTCTTTAGACGACACGTCACATCCGGTCAA
ACGACAACCGCGCCCGGCCTAACGACAACGATTCGAATGTAGAAGCAAAA
TCTATAATCAACGGACAAATCCCTTCCATTAACGATGATTTGTAGCACTA
ATTCTAACACAATTATAAGAGCGTTCTAAGCGTATCTGCACTTCAAACAT
ACAACGGCATATAAACCTAAGACTTTCCATTGGTGTTCATAGCATAACAG
TCGACTTGCCTCTTTAATCATTTAAAATCGTTTTACAGTGTTTTTTTCTG
TGACCTCGCTTTTAAAACTTAAGATTTATAAATACCGGTACTACAATGCG
GCTTCCAAATCATCTAGTGATAGATTTCTTAATCTTAACCTATCATACTC
GAGATACAAATAAATAGAATGTGAACATATTTGAAGTGTGGTGTGATCAT
TTGGATCTCTTCTGCTTAATTAGTAGAATCCCACTCCTCCATAATATCCC
CATTCCACTAGCTAGGGCGGCGAAATCGCTGCGACCTAAAATTTCACAGG
TAAAATAATATTTTTACACTTCGTGTGTTTTATTATATTTTCAGTCATAC
ATTTTACATTTTGTAGGATATTCCAATCATGAAATTAAGGGTTACATGAA
TCCAATCTAGGTCGTAGCGAGATTGCAGTCTAGTGCAATGGGGGTCTAAT
TAACATCACCTACCCATCCACAATTTCTGTGTCCTTAACGCCCACTTTCT
ACTGAGGCTGAGACCCCAAATTTGACAAGTCAGTCAACGAATTTCATTGA
AAAAGAACACATTAAAATTGTTTTTAGGTTCAAGGGTCACAAAAGTCCAG
TTTTTGTCACTCCGAGGTCATTGTTTAGTGGAAATCATATCTCAGTTTTA
AAAGTAATATTTTGCCATGCTGGTGTGCAAAAAAGACACTAAAGATTGCT
TGCAGTGACTGTTCAGAG Coding sequence (CDS) from alignment at Sc0000226:210322..218839+ >BlTCONS00113016 ID=BlTCONS00113016|Name=BlTCONS00113016|organism=Branchiostoma lanceolatum|type=CDS|length=1032bp|location=Sequence derived from alignment at Sc0000226:210322..218839+ (Branchiostoma lanceolatum)
ATGCGCCCGCTGGTTTCTGTGCTGGCCGTCTACCTGGCGTTCCTCGTGGC
TGCCGTGACGTGTGCGCCAGCAGCAGACGATGATGACGACAACGCAGAAG
TGACTATCCCGGATGCCGCTATGGAAACTCCGTCGCTGCCAGAGGATGTG
GAGAAGATCCTGACGGATGCGAATATCCAGAGGTACCTGGGTGAAGCGGA
ACCAGAGGATCGCAAGAAGAGAGAGACGCATACCGCAGACGGCTGTGAGG
ACCTGTACCACGACAAGTGTGCCTGTCGGTACTGGGCAGCTGACGGGGCC
TGCGACTATTCCCATCAGTTCATGGGCATCTTCTGCCAAAAGTCGTGTGG
GCTGTGTCCTCCGAGCAATGAAGATGAAGTGTGTGCGGATATCTTACTCC
AACCCGTCTGTGACCACGTCATCAGCTTGGGGAGGGCTCTGAAGGGGTTG
GCTGAAGTATGCTGCAAGAACAGCTCCGGGCTTTGCCCTGTGATAGACCC
AAATGAGGACGAAGTGTTCGAACAACACTGTTTGGAAGCCCACAACGCGA
AGCGGGCCATTAAGAACGCACCTCCCATGGCCTGGGATCCGATGTGTGCA
CAAGAGGCGAGGAGGTACGCGAAGAAACTGAAGGCCCGATATGACGCGAA
CCCGAGAACTTATCCACTGGAGCACTCCTCACAGGCGGAGCGCACCTGGG
CTGTGGAAGGGAAGAACGTGGTGCACGGAGAGAACCTGTACTGGACCTGG
TCGGACGTCCCGGACTGTACTGGGAGCAGCATGTACAAAAACGCCATCGA
GGCCTGGTATGACGAGGAGAAGTACTACAAGGCTTTCCGGAGGAATGGAA
GAGGTGTTACCCGCAGTGGTATCAGGTTGTACGGCCACTATACTCAGATA
ATGTGGAAGGAGACCGGCGCTGTCGGCTGTGGCAGGTCCGACAACAAACC
CAACAACATCCTGGTCTGCTACTATCAGAAAGGTGGGAACGTCTACAGCA
CGCCGGCGTTCAACAGAAATGTCCCTCTTTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113016-exon-Sc0000226-1564993656:210322..210476 | BlTCONS00113016-exon-Sc0000226-1564993656:210322..210476 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:211664..211800 | BlTCONS00113016-exon-Sc0000226-1564993656:211664..211800 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:213004..213151 | BlTCONS00113016-exon-Sc0000226-1564993656:213004..213151 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:213673..213789 | BlTCONS00113016-exon-Sc0000226-1564993656:213673..213789 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:214552..214572 | BlTCONS00113016-exon-Sc0000226-1564993656:214552..214572 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:215141..215220 | BlTCONS00113016-exon-Sc0000226-1564993656:215141..215220 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:215984..216114 | BlTCONS00113016-exon-Sc0000226-1564993656:215984..216114 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:217249..217423 | BlTCONS00113016-exon-Sc0000226-1564993656:217249..217423 | Branchiostoma lanceolatum | exon |
| BlTCONS00113016-exon-Sc0000226-1564993656:217765..218839 | BlTCONS00113016-exon-Sc0000226-1564993656:217765..218839 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000226 | genome | Sc0000226:210322..218839 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF055401 |
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