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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000101:246449..254302- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00085088 ID=BlTCONS00085088|Name=BlTCONS00085088|organism=Branchiostoma lanceolatum|type=mRNA|length=7854bp|location=Sequence derived from alignment at Sc0000101:246449..254302- (Branchiostoma lanceolatum)
GTGGGAAGGGTAACCTTCTTCTTCCCTCTACCCAGCATCGCGTTCATGAC
TGCTGCTGGCGTCTCTACGGTCTTCCGTGTGAAAAACTCTGGGTATGAAA
GAAGCCAAGATGGCTTGACCTTTAGACAAAACCAATTATCATAGGGGCGT
ACCTCTCTAACGATATTCTGTGCTAGTAAGATAGCAAAATATTAACGTTG
ATATTATTACTTTACGGCTACATTATATCTTAAAATAGAACTGTGCAGCC
TTGCAGAAAATCTGATATGCTATGGGAGGTTTTGACATCGCTTTTAACAA
TTCTGTAGATGAATTCTACAGTTTTACAATAATGCACCCTTCCGGCGACC
TTTCACCTAAAATGTCGCTGTGAAATACTTTTTGCAAAGTCCTTTCCACA
CTTCTTCACGCCACACACAACATTAGGAACACTTTCATTGCTTTAGATAA
CCTGTAGATGATAAATTGCTGTGTTATTTCTGCCTACACTTTTAGACTGT
TGTGTAGAGGCAGTTTGGGGAGAGGAACACCGTGGTTCTGTCCTCCACGA
CAGCGGAAAACAACATCTCATCCCCGGGTGATCACACCAGCCCGAACCTG
CGCAGTGAGCCGATCTGCCGCCGCCATGGCCGCAGCAGCCCGGGCCCCGG
CCAGGATTGGCGACCCCATCAGTGACATAGACACTCCTGCGCTGGTTGTA
GACTTGGAAAAGCTCCACATGAACCTAAAGATCATGCCGCAAAGCATGTC
AAGTTTCGGGAGCGTGGCAGTTCGTCCACACGCTAAGGCACACAAGTGTG
CTACCCTTGCTCTTCTACAGGTGTGCATGCTTCACATTAGCCTGTTTCAG
TTCCAGGCTCTACCTTCACCAAGCAGGGTGACACTCGGGCTAGCTTCACA
TCAGGATTTGATGTTGAAAGTTGCAGGGAGATGTCAGTCAGATGAAGAGA
ACTAAAGATTCTCCCCGGCATTTTTTCCTGAATACCGTTGCATTGTCCGC
AATTTTTACCCATCAACATGTTTTTGAATTAAGGAATCTTTTTTTTAAAT
TCAAAGATAAGCTGACCTATGTAATCCATAGTCTTTTATTTCATTACATT
AGTGCGTAAGTGTTGCTTATCAATATCAATCTGTAAAAGTCATGTTGAAC
CAATGGTTGAACTCAGATCCTGTCAGAACACATTTTCACGACACCTTGAG
GACTTGAGGACATAACGTTATGAAGACAATAATGTAAAGCTGAACAGCCA
TTGAAGACAGTACTACTACTATGTTGGACTGATGATTTAAAGACTGTTCA
CCTGAGCATTTCTATATGAACACAGTGTATCTATAGGACTGATGGGTGTC
ATGTTGCCCCAGGTGTCCCATGGTGCTGTGGGTATGTGTGCACAGACACT
GACAGAGGCAGAGGCCATGGTGTATGGAGGGGTGCAGGATGTTCTGGTTT
CCAATCAGGTAAAATTTGTGATGACCATCTGTTTAGCAAATAACCACACC
AACATGGACTTCTCCAGATCGAGTGGTTATTCACTAAAAAGACAATTTGC
GGTAAATCTTTATTGATGGTAACATTATTAGTGAAAAAAACTAGTGTTTT
TAATCAATTATGTCACACAGTAACTAGTATGCAATATGCGTGTATGTTGA
TGTCTTCCTGGGCCACTACTGTAGAACGTACTACATGTACTGTACTCGTA
ATGTTTCAAATTTTCCTGCACAGATTATTGGCCGCTCTAAACTGCTGAGG
TTTGCCACCCTTGCTCACCATGCAAAGATGTCTGTGTGTGTTGACAATGA
AGAGAACATCCGTGAGCTGTCAAACATTGCAAAGGAGCTGAATGTGAACA
TTGGAGCTGTCGTGGAGGTCAATGTAGGCCAGGACAGGTATGGGGGAAAT
CGTTTTCAGTCAGTGTGTTGAAGAAAATTGATGTCATGCAGCATTATATA
GCTTAGATGAGATGTTGAGATGTGGCAAGGCTGCAAGTGCAGTCTGCCCC
TGTGGGGAAGACCCTCAAACCATATAGCACCGTCTACAGATCTAGAACTT
TGAACTTGGCCCAACATGTACAGAGGATGAACTATGGGAGGCTAACCTAA
GAGCACAGAAATGGATCCAGAATTGGAGCGACAAGATATGATGATGATGA
TAGAGCTTTGAATGTGTTCAGCTGTAGGATAATTTCAACAAATGGACTCT
AAGTCTGATTCATATAGTCATGTGGAATTAGATTGCCAATCAGGATTGAA
AAGCTCACCCGTTGTCCCCACTTTCTATTGATTGATATCCATAATCAATA
CTTACTTTGTCCTATGGTTAGAGGAAAGTGTAAATGTGACCGTCATCCCT
ATAGTGTTGTGATTGCAGCTGTGCCTGTATCATAGTCCAGCCAAAACAGT
AACTTTGTGTAACTAACATTTTCTAGATGTTTCTAAAAGATCATCTCTAT
GTAACTTTTGTCTGTTGAAGATGTGGAGTAGAGCCAGGTCCTGAGGTCCC
CAGGTTAGCCAATCTTGTACAGGAGTTGCCCAACCTCACCTTTGCTGGTG
TTCAGTGTTACCAAGGGTAAGAGTGTGGCTACTAAATTAATTTAAGGCCA
TGTTGATTTCATTATATGGATGACATCCTCTGGGAACCCCAAAACTGTTT
GGCAAAATCAAAAGTTGCCTTCATTTTGACATTTACGTGGTCTACAAGGT
TGAACAAATGACTTAACACACAGAGAATGGTATACCAATTAATGGATTCT
TCATTTTGGTTAATTCATATCTTCTTCTTTGACTTTGGCACTCTACGACA
TTGGTATCCGTTTTCCGAAATATCTTTTTGCAACATATGGCATATATTTG
CTCATTTTGTAGCTGCTTTACATGATTTATGGTATAGTAGAAAACTTTTT
TTTATTTTTGAAAATGAGCTAAAAGTGATGCGCGCAGATGTCATCCATAT
AATCAAATCAACCTGGCCTAAGGTCCAAAGATGAGAAACTGGTAATAAAC
ATTTCCTGCCCTATATTAACCTTTAGCACACTAAAGTAGCCATTTGGCAC
ACAATTGCTATTGGGTTCAGAGATAGGCAGCAGGGAGAAGGTTAAAGGCA
TTGATATGCTTGCATGTTTTACAGTCCACGGAGATGTAGTAACTCTTCAT
ATTAGGATTAATATTCATAGTAGGATCAGATTTATGGGCATACAATTTTG
GGCGAGTAGATAAAAACTCAGGCTTATAATACTATCCAACATGAAACCCT
CATGTTCTCTAACTTAAAGGTAAATTTCCAATTCCTTTTTACCCATGGCT
GATCACAAATTGAACATACAGTTCTCTCCATGTTTGATGTTTGTTACTGT
ATATTGTCTTTATCTGTGTAGCAGTAGCAGTAGTACTGTAGCAGTAGCAG
TAGTACTGTTTTGCACATTATTTTTCCCCCTAGTGCAAACCAGCATGTGA
GGAAGGCTCCTGATAGAAAAGCTGCTACAGACAGTGTTGTTGAAAAGTCC
AAGATTGCACTGAAGGTGAGTAAAGAATCTTGTATTTACATTGATAAACC
TGGTGCTGAATAACAATCTAGATCTACTGCTATCCCTGTCCCAAGTACTG
AATGACGTTCTAGACCTACTGTTACCACTGTCCCTGGTACCGAATGACAC
TCTAAACCTACTGTTGCGCCTGTCCCTGGTGTTGAACGGCATTTAAAGCC
TACTTTTATCCCTGTCCCAGGTGCTGAATGATATTCTAGACCTACTGTTA
CCCTGTCCCTGGTGCTGAATGATGTTCTAGACCTACTATTACCCTGCCCT
TAGTGCTGAATGATGTTCTAGACCTACTGTCACCCTGTCCCTGGTACTGA
ATGATGTTCTAAACCTACTGTTTCCCCTGTCCCTGGAGTTGTATGACAAT
CTAGACCCACTAGATGTTAGGGCAATGTTGCTCTGTCCCTGTGTCCCATC
CCTGGTATTGAATGTTATTTTAGACCTACTGTTTTCCCTGGAGCTGAATT
GCATCCTAGACCTACTGTTATCCCTGTCCCTGAATTACATTCTAGATCTA
TTGCTGCCCTGTCCCTCATGCTAAATGATGATCTAGAGCTACTGTTGCAC
CTGTCCCTGGTGCTGAATGATCTTCTAGACCTACTGTGAGACTCTATAGT
ATGTATACGTTACATGTGTGACTGTTTGAACTTAGGACGTTTGATCCCTT
TCTCTCATTTAAATACAGCCAGTTGTTCGCGAGATTTCATTATATGAAGT
TGTGTCAGTGTTGCCCCCGACTTCTCATACTACTGTTACCCCTGCCCATG
GTGCTGAATGATGTTCTAGACCTACTGTTACCCCTGCTCCTGGTGCTGAA
TAATGTTCTAGACCTAACGTTACCTCTGTCCCAGGTGCTGAATGATATTC
TAGACCTACTGTTACCCTATCCATTGTACTGAATGGTATTCTAGACCTTT
TTTTACCCTGTCCCTGGTGCTGAATGATATTCTAGACCTACTGTTGTACC
TGACCATGGTGCTGAATGATATTCTAGACCTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATCTAGACCTAATGTTGCCCCTGTCCCTGGTCCTGA
ATGATATTCTAGACCTTCTATTCCCCTTCCAATGTGCTGTTTGGTCTGCT
CCTGATTTTAGGGCATGCTTATAATGCACAGGTAAACGTTATTTAGATTA
CAACTGCTTTAGCCACATAACATTGGTATGTAAAGGACATGTGATGTATG
GTTATGCATGATGAAATACAAAAAAAATTAATGTATGATTGTATATACAC
AGAAGACAAGTGGTTGTCCTGGACACATTGCTTAATGCTTGTGTCCATGG
GAAAAATATTGGGACCAACTGAAAGCGGTCGTCTTGAGCCGATGATCGTC
TTTTGGACGTGGTTGTCAGACCAAGTTTGACTGTTCATGTACACGGATTT
AACAGTGTTGTATCTTGTAGGCCCTGGAAGATGCTGGGATAAAGTGTGAC
TATGTGACAGGTGGGGGGACAGGAACGTACCTGTATGAAGCAGGGAGTGG
AGGTTGGTCTCTCCTTTTTTCTACATGGAATTCTCTAGTTTTTAGCAGTT
TGCTGATCATCATAATTAATTCCAAATGTAAAGTGTTGATGTAGGAGTTG
ATGCAAGTATAAGATACACAAATAGGGATGAGTTTATTTAAACGGGANTG
AGTTTATTTAAATGGGAGAATGGGATTGGCCGTTTGGTGTTCTACCAGCG
GTCACGTTTGGACCCAACGTAAACTTAGTACAGAACATTCCCAGAAAAGG
AGATCAGCTTTCTACTATATTACACTAGCACTTGATACCACAAAAGGAGA
GAGACTATTACAGTACCTGGGGATGATATGGTGCTTCCTTTTATTATTTC
AATAAATAGTGTTCACTGAAGTCCAGCCGGGGTCCTATGTGTTCATGGAT
GCAGACTATGGAAGGAACTTTGGCGAGGACGGCCAGTATGTACACCAGTT
CCACCAGAGCCTGTATGTCCTGGCTACTGTACAGAGTATTACAGTGAGTA
GAATGAAACTGTTGGCAAATAGATTATTTTAACCCTTATCCTGCTGGCGT
TTGTTGCGCAATTCATTTCATTTATTTGATTTCTTAATCAGGTCATTGGC
CCTTGACCTTTTCAGTGCTGCTGTGGCATGGTTAATTCCGCATTCAGTGC
GTTTTGCTGCGGTGTGATGTGTTCAGCTGAAAAATACCCCCAACCCATAT
TTTATGGGTCCCGCAGGACAAGAGTTAATGTGAAGCAAAAAATACAGAAT
GCTGAGATAGTACATTCAGGCAGGCAACAGCAAAGAAAATATCATTCAAA
AATTAGATTTTGTTTACCATGGTATGTTCATTTTTTCAACTTCACCCTTT
TTGCAATCAGTTGGCACTGGCATTTCAATTTTGTAGCTACTTTGTGTCAA
CCATACACTCTAAGATACAGCCAACTATTCGGTTTCACTGCCTTGCAAAA
TCTAGGTGTCCAAAACTTGCACAAGTGTACAGTATACTGTGTGTTTTAAC
GTATCCTACCTTGTTCCAAGGCTGGAAACCGTGCAGTGGTGGATGCTGGG
ATGAAGGCAGTCAGCCTTGATTCAGGTGAACCACTGGTAAGTTTTCATTA
CAGGATAACTGGTGACAATAAAGCTGAATGAAATGCCATTTAAATGTGAC
TGAAAACTTTATTCTAATCTTTTTGAAAAGGGCTTGGGTTTGTAGCAGGA
TAATTCGACAGCAGGATCTTCACTTCTTCTTGGGCTTGGACGCCTTCATG
GAAGGCACTGCCTTCTTGGCGGTCGGCGTCTTTTGGGCTGTTTTCTTGGT
AGCTGGTTTCTTGGCCGGAGATTTCTTGGTCTTTTTTTTCCTTTCAAAAT
CATTCTTTACTGTTTTTATGAAGAAAAACAATACACAAGACATGCATGGC
ACGCAAAATATGGTAGTTTACACACATGAATAGCCACAAAACCAATAAAT
AAAACCAATTGACAATAATAGTTTGAAAAATATTTCAATCTTAAATGGTA
ATTTCTTCAAGGTTCATCCCACCGCCGATGTGATCTACCACTGCGGAGGA
GACGAACATGGGATTTTAAGGCCTCCATTGGACTACAAGGTATCACAGAC
TTTTTTACAACAAGGTCTTCATATTCCAGAAACACATTAGAGGGGAAGTG
CTGAATAACAGCGTCCTTTTTTAGTAAGAAAGTCAGCAGAAATTTGTTGT
CTGAATTATATCAAATAATGGCTGCGGTCCTGCTGAGTTTAGCCATTGTT
CTGTTTTCAGTAGTGGTTTGCGGCGTTTTGAATTCTTTTTGCATTTTTGC
CGCAGGTGGGTGACAAAGTGTGGCTGATCCCGGGGCACTGTGACCCTACT
GTCAACCTCTACGATTGGATGATTGGAATCAGGAATGACAAGGTAGAGAG
TCTCTGGCAAATCACAGGCCGTGGTCCTGGTATCTGATGGAAAGAAGAGC
TGTTCCCTGCGCCAAGCAAGCTGCCATCTTGCGTCAGCATGCATACCAGA
CTTTGTGTCACAAATTGATTTTTTTTTTTCAATGTTTGATGGTCCAATTT
TACATTTACTTGTAATCCACTGCAGGATTATACAAAATGTTGACCCGAAA
TTGTCAGAACTGTTGTATTTGAGGTAAAAATTGATGTTATTTCCTCTTCT
GCTTCTGGATATCCATCCAGTTTGAAATTGAATATGATGTGTTGTGGGGT
GAGGTGTGAATGGGGCTAAGGCAACCAGCCTCAAATAGAAGCCCCCCCCC
CCNN Coding sequence (CDS) from alignment at Sc0000101:246449..254302- >BlTCONS00085088 ID=BlTCONS00085088|Name=BlTCONS00085088|organism=Branchiostoma lanceolatum|type=CDS|length=1293bp|location=Sequence derived from alignment at Sc0000101:246449..254302- (Branchiostoma lanceolatum)
ATGATAAATTGCTGTGTTATTTCTGCCTACACTTTTAGACTGTTGTGTAG
AGGCAGTTTGGGGAGAGGAACACCGTGGTTCTGTCCTCCACGACAGCGGA
AAACAACATCTCATCCCCGGGTGATCACACCAGCCCGAACCTGCGCAGTG
AGCCGATCTGCCGCCGCCATGGCCGCAGCAGCCCGGGCCCCGGCCAGGAT
TGGCGACCCCATCAGTGACATAGACACTCCTGCGCTGGTTGTAGACTTGG
AAAAGCTCCACATGAACCTAAAGATCATGCCGCAAAGCATGTCAAGTTTC
GGGAGCGTGGCAGTTCGTCCACACGCTAAGGCACACAAGTGTGCTACCCT
TGCTCTTCTACAGGTGTCCCATGGTGCTGTGGGTATGTGTGCACAGACAC
TGACAGAGGCAGAGGCCATGGTGTATGGAGGGGTGCAGGATGTTCTGGTT
TCCAATCAGATTATTGGCCGCTCTAAACTGCTGAGGTTTGCCACCCTTGC
TCACCATGCAAAGATGTCTGTGTGTGTTGACAATGAAGAGAACATCCGTG
AGCTGTCAAACATTGCAAAGGAGCTGAATGTGAACATTGGAGCTGTCGTG
GAGGTCAATGTAGGCCAGGACAGATGTGGAGTAGAGCCAGGTCCTGAGGT
CCCCAGGTTAGCCAATCTTGTACAGGAGTTGCCCAACCTCACCTTTGCTG
GTGTTCAGTGTTACCAAGGTGCAAACCAGCATGTGAGGAAGGCTCCTGAT
AGAAAAGCTGCTACAGACAGTGTTGTTGAAAAGTCCAAGATTGCACTGAA
GGCCCTGGAAGATGCTGGGATAAAGTGTGACTATGTGACAGGTGGGGGGA
CAGGAACGTACCTGTATGAAGCAGGGAGTGGAGTGTTCACTGAAGTCCAG
CCGGGGTCCTATGTGTTCATGGATGCAGACTATGGAAGGAACTTTGGCGA
GGACGGCCAGTATGTACACCAGTTCCACCAGAGCCTGTATGTCCTGGCTA
CTGTACAGAGTATTACAGCTGGAAACCGTGCAGTGGTGGATGCTGGGATG
AAGGCAGTCAGCCTTGATTCAGGTGAACCACTGGTTCATCCCACCGCCGA
TGTGATCTACCACTGCGGAGGAGACGAACATGGGATTTTAAGGCCTCCAT
TGGACTACAAGGTGGGTGACAAAGTGTGGCTGATCCCGGGGCACTGTGAC
CCTACTGTCAACCTCTACGATTGGATGATTGGAATCAGGAATGACAAGGT
AGAGAGTCTCTGGCAAATCACAGGCCGTGGTCCTGGTATCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00085088-exon-Sc0000101-1564993656:253483..254302 | BlTCONS00085088-exon-Sc0000101-1564993656:253483..254302 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:252845..252940 | BlTCONS00085088-exon-Sc0000101-1564993656:252845..252940 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:252416..252579 | BlTCONS00085088-exon-Sc0000101-1564993656:252416..252579 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:251737..251832 | BlTCONS00085088-exon-Sc0000101-1564993656:251737..251832 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:250788..250869 | BlTCONS00085088-exon-Sc0000101-1564993656:250788..250869 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:248701..248782 | BlTCONS00085088-exon-Sc0000101-1564993656:248701..248782 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:248210..248343 | BlTCONS00085088-exon-Sc0000101-1564993656:248210..248343 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:247617..247682 | BlTCONS00085088-exon-Sc0000101-1564993656:247617..247682 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:247114..247191 | BlTCONS00085088-exon-Sc0000101-1564993656:247114..247191 | Branchiostoma lanceolatum | exon |
| BlTCONS00085088-exon-Sc0000101-1564993656:246449..246897 | BlTCONS00085088-exon-Sc0000101-1564993656:246449..246897 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000101 | genome | Sc0000101:246449..254302 - |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF041500 |
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