BlTCONS00062843 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062843
Unique NameBlTCONS00062843
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000050:1317046..1318739+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062843 ID=BlTCONS00062843|Name=BlTCONS00062843|organism=Branchiostoma lanceolatum|type=mRNA|length=1694bp|location=Sequence derived from alignment at Sc0000050:1317046..1318739+ (Branchiostoma lanceolatum)
GGTTGGTGCCAGGGCTGAGTTCCCACCATTGATAGCCTTGGTGCTTGTCG AGTCATTTATAACTGTGTGTCAAATGTTGCCAAGACGTTCCGATAGTTAC GTGGTCTAACAGTACCTACAAAACAAAATGGAGGTCGAGCAAGGTAAGAG GAAGAGACACCAGAAGAAGGTGACGAGATACGTGACGATAGCTGCTGTTG TCGGTGTGGTGCTGGTGGCTGCCATTGCTCTGTTGGTGTACTTTCTGGTA CCCACCGTTACGATCGGTAAGGCTGTAAGCTACAGCTTGAGTTTAGAACG TTTCTTGCCATTGTGGGTTCTTGTCAGAGGATTAGCTACAAGTGACAAAG CAAAGATAGCAATGATTTGAATGAAGATAGTCAATACAGTACTCAAGAGA AAAAGTGGCTCAGGTGCTCATAGAGTTTTGATCAGTTTTGTTTAGTCGGT TCAAAACAACTCTGTAAGCGGGGTCAAGCTGTCATGGCCAAATCTTTCAA GGTCATTTGAGCGTGTGTAAATACTCGTCTGAATTTGTTGCTTGTGGCTG CCTTTTTTACTCTTAAGGTAGGTCCTAGGACTACAATTTTACTCGATGCT GAATCAATGCAATCATTCTACAGAATTAATGAAAAAACATATGTAGAGGA AATTTATTACTTCTTTTCTCTCAGACGAGTTCCCAACTGACGGCAGTCTT TTGGACTACTTCAAGTTTGACAGACAGGACGCCATGCAGGTCACGTGGTC GCACGGAGCCAATAGCAAGGCTCAATTGGCAGAGGCATTAGCAAGTAAGT AAACACTTGTACTTGACCCTGGACTCTTTGAGTCGTATCCAACAGCCCCT CTAATTTTTACAGAATAGCCAACTAAAAACCTATTTCTTATACCAACCTG CCATCCAACCTACCTACCAGACAAACAATCAAACTAACTAACTAACTAAC TAATTAACTAACTAACAAATAGACTAACTAACAAACAGACAAGGACACAA AGAAACAACCAACCAACCAACCAGTCAACCAACATATTTACTAACCAACG AAACAAAGAACAAGCCAACAAAGCATTCAGTCATATCTAATATGTCTAGT ATGTATAGCTACTAGTATATTTCATCGAGATCTTTTTCTCAGCTCAATGA TTTTACCCTCCTCCTCAGGTGACGTACACATGCTAGAGGCAGACATCTTG TTACGTGGACAAGGTACGCCTGCGCAGACGGACATTCCCGTTATGGCGCA CCCTCCCCAGACGGACAGTGACAACACGTTTGAAGAATGGCTCGACGCCG CTCTCGAGTCCAGAAAGGGACTTAAGATAGACTTCAAGAGCATTGGAGCG GTGGCTCCCTCCCTAAGGCGAGTGATGTAAAAGATTGATTCGTTCACCAA TTGAACATAGTTTTCTCATGTGATCAACCTTATTTTTTGTCTACAAACGT TACGACAAACATATCATTAATTTCTGGGCGCCTAACCTTCACAAACGAAT TTAAACATTCGCAAGATGACAGTTACTCATGCGACTGGACAATTTTGTAA TTTTCACAATCATCCAGTTGCTTGAGTAACTGTTATCTTGCGTATCTTAT TACCTTGATGGCTAACATTTATCGATGAGTTGCAATGCTTTACGTATACG ATAAACTGTATGTCGCTGAATTACCACATGCACAGGATTCTGAG

Coding sequence (CDS) from alignment at Sc0000050:1317046..1318739+

>BlTCONS00062843 ID=BlTCONS00062843|Name=BlTCONS00062843|organism=Branchiostoma lanceolatum|type=CDS|length=465bp|location=Sequence derived from alignment at Sc0000050:1317046..1318739+ (Branchiostoma lanceolatum)
ATGGAGGTCGAGCAAGGTAAGAGGAAGAGACACCAGAAGAAGGTGACGAG
ATACGTGACGATAGCTGCTGTTGTCGGTGTGGTGCTGGTGGCTGCCATTG
CTCTGTTGGTGTACTTTCTGGTACCCACCGTTACGATCGACGAGTTCCCA
ACTGACGGCAGTCTTTTGGACTACTTCAAGTTTGACAGACAGGACGCCAT
GCAGGTCACGTGGTCGCACGGAGCCAATAGCAAGGCTCAATTGGCAGAGG
CATTAGCAAGTGACGTACACATGCTAGAGGCAGACATCTTGTTACGTGGA
CAAGGTACGCCTGCGCAGACGGACATTCCCGTTATGGCGCACCCTCCCCA
GACGGACAGTGACAACACGTTTGAAGAATGGCTCGACGCCGCTCTCGAGT
CCAGAAAGGGACTTAAGATAGACTTCAAGAGCATTGGAGCGGTGGCTCCC
TCCCTAAGGATTCTG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062843BlTCONS00062843-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062843-exon-Sc0000050-1564993656:1317046..1317311BlTCONS00062843-exon-Sc0000050-1564993656:1317046..1317311Branchiostoma lanceolatumexon
BlTCONS00062843-exon-Sc0000050-1564993656:1317720..1317839BlTCONS00062843-exon-Sc0000050-1564993656:1317720..1317839Branchiostoma lanceolatumexon
BlTCONS00062843-exon-Sc0000050-1564993656:1318214..1318412BlTCONS00062843-exon-Sc0000050-1564993656:1318214..1318412Branchiostoma lanceolatumexon
BlTCONS00062843-exon-Sc0000050-1564993656:1318731..1318739BlTCONS00062843-exon-Sc0000050-1564993656:1318731..1318739Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:1317046..1318739 +
Properties
Property NameValue
GeneIDBlCUFF030841