BlTCONS00043517 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00043517
Unique NameBlTCONS00043517
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000024:1802925..1805701-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00043517 ID=BlTCONS00043517|Name=BlTCONS00043517|organism=Branchiostoma lanceolatum|type=mRNA|length=2777bp|location=Sequence derived from alignment at Sc0000024:1802925..1805701- (Branchiostoma lanceolatum)
CTGATGCCGATAACATGTTGAACATGGGCCTCCTGACTAGAGATTACTCT TTCTCCAGAATTAGACGCACCTGCTACTGCGCCTTTCTGCACAAAACGTT TCAGGAATACATGGCCGCCCGCTACATCAGTGGCCTGGTCATGGATGAAA GTAGCAGAGAAGAGGGGATGAAATGTGTTTGTTGCTTATTTGGTATGTCA GATGCTACTGTGGTTAACAGGGAACTGATTATATCTTGTTATCGTAAGTA CAGGGTGGTGCAAAACTGGTTACTTTTGATCCTGGGCGAGAATTCACGCC CACTACTTGAACGGTTTGTAGAGGAAAATGTTCAAAGTCACGACGACGAC GAACTTCGGTCCTTTTTCTGTCTCATGTGGCTTGGGACAACTGGTGCAGG AAGTGAAATGGCTGACATTGTAGCACCCTGTCTGTCTCACCACGTAACCA ACAACCTTGATACCGATGATGTAGGTACTTGTAGTGATGATCATGCCAAC TGGTGTGTTGGTTTGGCTCACATACTGACTTTTCAAAAGAACCCCTCTGA GAGCCAAGGTGTTATACAGCATCTCAAAATACACCTTCCTGGTGTAGAAG ATGTTGAACAAAAGAAGCTTGGTATGTTGAAAAATGCATTATCAGAGTAT GACGCAATGCACTCTGTGACATTTGATATTAGTGAGACCGATGTCATATG GTATCGTTTCTCTTCACTGCACGCATTCATACCTTCGGTTGGCATTGAAA GTCTGTCCATATGTAGCGAACATGGTGGCACATCCCATATGTCTTTGTTA CGTATATTGGAGGAGTTGTCGGCAGCATCAATGATAAAACATATTGCAAT CGATGTAATGTTGGACGATTGTGACGACGGAGACGGTGACTCATTGTGTG ACACGTTGGCCCGTATGATTAAGAGTCACAGTCTTCTCAGTTCTATAAGC ATAAAGTTAAAATTAGACATAGATTCCTGTGAGCATAATAACCTTGCAGT AAGGTGGCTGAGTTACCTAACAGAAACCCTGCAGAGCATCTCAGAACATA CAAAACTCGAGGACGTTGTGTTCGAGCTTGATGATAACTATTCTTCAGGG AGAACTGATTTTGTATCTCCGGCAGGAAGGCACAAAAACAATGAGACGTT TGACGTCGAGCCAATGGTGCACAAACTCACAGAATGTATTAAGAAAAGCA AGGTGTTGAAGACACTGAGGCTTACGTTACTAATCTATGGCGACAGTGAT TGTACATATCACATAAACCTTGGAGATTGCAGCAATCAGTCCCTCTCCAG CCTGTGTTCAGCGATCCAGGAAAACCGAACTCTGGAGTCACTGGTGGTTG AGGGGATGCTGTCTCACTCAGAGAGTAGGGCAGAGATGATTTCTGAGCTG ATGTGTAATAAGCCCAGTAACTACGAGGAACTCAGCATAACTATGTCCGA TAGCACGTCAGCTCATGACCAAAACTAATGCATGGCGCGATCCCCTTACC GGGACTTCCGGGGTACGGCAGGGCAGTAAAGAGCAGGTTATAATGTTTAG TCAAGAGAACACAAAAGTCTCTTCTATTTCTTACAAAAGAGAAGGCAAGC TTATGTTCTCTTTGCGACTGTTTTCACAGGTTAACCGATTATTGTACATT ATAAGACTTTTCTGATTTAGAGCGATCGACCAGCCCAGTTTCATGCCTAC GAAGACTTTCTGATGTGAGTGATCAAAATACAATATCATGTTTATGGGAT ACTAAAAACTGAATCTCTGACAAGAGCACGACCATCCAGACACACCTTTC TGACATTAGAAACCTTTCTTTGATTGGATATCATGTATCTCTATCATTTA TATGCTTTGACTCCATATAATACTTGACTTATACTTTACTGTATTGTTAT CATATATTCATTATAGCATAGATCAAGAAAGATGCTGGACTGCATCCAAG ATGTCTGTAAATTCAGAGAAAACCATCATTGAGTTGTATAGATTAAATTG TTTGAAAACTTATTCGGTCAATATGTTTGCAGTCAGTAATGAAATGAGCA TAGATGCTCAAGACAGAAAGTTTGACATCGGACAAGAACACGACAACACC CACGTTTGGTTGATCACAAGTTGTCAATATAATACCTTACTTAATATGTT ATAGCGTGCCTCTACACTGGTATAAGTTAATATTAGTGTAATAACCTAGT CCTGTATGAGAGGACACAACTGTACATTCTTATCATCAAACCGAAATTGT CCGAATGTTGCGGTATGTTACTATAGAAGATGAAGATGCAAATGTTTGTA TTTATCGATGCTCATTTTTGTTCATCACAGATGTTGTGCATACAAATAGA GATATCCAATTAACTTGTTGACATTCTGCTTGCTAACGGGTAAAAATGTT TTGCCTAGCATAATCACAAATTCTTTCTAACTTGTTTACAACCAGTTTGT TCAATCTCAATCATGATGTTAGATTGACTGACTTTCAAGTATTGTACGCT TTTACTGTACTCCTAGGGTAGTAAAGTCATGTAGAATATGTGTCTGTTGA AGTGACAACATCGCTAATTGAATAAACCACGATGGTAACAGTAGTTAAAC ACATGTAAATACAGGGAAGGCTAGAAGTCAAGTGCTACCCTTATTATAAT AGGGAAAATCTAATGAAGTTCAATGTACAAACGAATGAACCAAGTTTGAA TAGTGATGTAATCAAACTGTTAACAATATTCTACGAAGGGGTCACCACAG TGACCCATTATATTCCATATATTTGTG

Coding sequence (CDS) from alignment at Sc0000024:1802925..1805701-

>BlTCONS00043517 ID=BlTCONS00043517|Name=BlTCONS00043517|organism=Branchiostoma lanceolatum|type=CDS|length=1476bp|location=Sequence derived from alignment at Sc0000024:1802925..1805701- (Branchiostoma lanceolatum)
GATGCCGATAACATGTTGAACATGGGCCTCCTGACTAGAGATTACTCTTT
CTCCAGAATTAGACGCACCTGCTACTGCGCCTTTCTGCACAAAACGTTTC
AGGAATACATGGCCGCCCGCTACATCAGTGGCCTGGTCATGGATGAAAGT
AGCAGAGAAGAGGGGATGAAATGTGTTTGTTGCTTATTTGGTATGTCAGA
TGCTACTGTGGTTAACAGGGAACTGATTATATCTTGTTATCGTAAGTACA
GGGTGGTGCAAAACTGGTTACTTTTGATCCTGGGCGAGAATTCACGCCCA
CTACTTGAACGGTTTGTAGAGGAAAATGTTCAAAGTCACGACGACGACGA
ACTTCGGTCCTTTTTCTGTCTCATGTGGCTTGGGACAACTGGTGCAGGAA
GTGAAATGGCTGACATTGTAGCACCCTGTCTGTCTCACCACGTAACCAAC
AACCTTGATACCGATGATGTAGGTACTTGTAGTGATGATCATGCCAACTG
GTGTGTTGGTTTGGCTCACATACTGACTTTTCAAAAGAACCCCTCTGAGA
GCCAAGGTGTTATACAGCATCTCAAAATACACCTTCCTGGTGTAGAAGAT
GTTGAACAAAAGAAGCTTGGTATGTTGAAAAATGCATTATCAGAGTATGA
CGCAATGCACTCTGTGACATTTGATATTAGTGAGACCGATGTCATATGGT
ATCGTTTCTCTTCACTGCACGCATTCATACCTTCGGTTGGCATTGAAAGT
CTGTCCATATGTAGCGAACATGGTGGCACATCCCATATGTCTTTGTTACG
TATATTGGAGGAGTTGTCGGCAGCATCAATGATAAAACATATTGCAATCG
ATGTAATGTTGGACGATTGTGACGACGGAGACGGTGACTCATTGTGTGAC
ACGTTGGCCCGTATGATTAAGAGTCACAGTCTTCTCAGTTCTATAAGCAT
AAAGTTAAAATTAGACATAGATTCCTGTGAGCATAATAACCTTGCAGTAA
GGTGGCTGAGTTACCTAACAGAAACCCTGCAGAGCATCTCAGAACATACA
AAACTCGAGGACGTTGTGTTCGAGCTTGATGATAACTATTCTTCAGGGAG
AACTGATTTTGTATCTCCGGCAGGAAGGCACAAAAACAATGAGACGTTTG
ACGTCGAGCCAATGGTGCACAAACTCACAGAATGTATTAAGAAAAGCAAG
GTGTTGAAGACACTGAGGCTTACGTTACTAATCTATGGCGACAGTGATTG
TACATATCACATAAACCTTGGAGATTGCAGCAATCAGTCCCTCTCCAGCC
TGTGTTCAGCGATCCAGGAAAACCGAACTCTGGAGTCACTGGTGGTTGAG
GGGATGCTGTCTCACTCAGAGAGTAGGGCAGAGATGATTTCTGAGCTGAT
GTGTAATAAGCCCAGTAACTACGAGGAACTCAGCATAACTATGTCCGATA
GCACGTCAGCTCATGACCAAAACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00043517-exon-Sc0000024-1564993656:1802925..1805701BlTCONS00043517-exon-Sc0000024-1564993656:1802925..1805701Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00043517BlTCONS00043517-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000024genomeSc0000024:1802925..1805701 -
Properties
Property NameValue
GeneIDBlCUFF021518