BlTCONS00037796 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00037796
Unique NameBlTCONS00037796
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000018:2689668..2693624-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00037796 ID=BlTCONS00037796|Name=BlTCONS00037796|organism=Branchiostoma lanceolatum|type=mRNA|length=3957bp|location=Sequence derived from alignment at Sc0000018:2689668..2693624- (Branchiostoma lanceolatum)
ACAGAAACCAAGAGTCCCCTGGTTGAAAGTTTTCACGTCACTTCCGGCCT
GGGCTCTCATCGTTGGACAATTCTATTCCAATTGGGCCAAATACTTTTTG
CTTACCCAACTGCCAAACTACATGAAGAATGTGCTGGGGTTCGACATCAA
AACGGTATGTTGTGATGCGTCATAACTCTTTTGTTACTATTTGTTGTTGT
GTCATGTTCTGGTGGAAGGTGTCCCTGTGGTGTAGTGGTCTGCGCTTCTG
TTACTATGGAAGTATGGAAGTTAAACACACTCCACTGCCAGTGAATTAGC
CCCCTGCTGCAGTGATTGCACCACAGTGTGGTCCAGGGATATGAAACGGA
GATGGGCATCGCCCTATACACCTTATGGTGTGGGAGGATTTTAATTTTTA
ACATGTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTATGGAAGTATGGAAGTTA
AACACACTCCACTGCCAGTGAATTAGCCCCCTGCTGCAGTGATTGCACCA
CAGTGTGGTCCAGGGATATGAAACGGAGATGGGCATCGCCCTATACACCT
TATGGTGTGGGAGGATTTTAATTTTTAACATGTTCTGGTGGACCGTTTTC
ATGTATAGAAATCGATGTTCCTCAAGGATCCCTCTTCGGACCAGCCTCCA
TTGATTCGACAGATATTGAACAAATCTACTCTCATCATCTTGTACAGATC
TAAATTGATGACTCAGTTGCAACCACATCATATTATTCTACAATAGCTCA
ATTTTAATCAAGGAAGGGGGAACTGTTTCTGTAGTCCTGCTTCTAAGTAA
GTCTTATGACTCAATCAGGCACATGACACCTCTTCTCTATTACTACACTA
GAACGGCTTGCTGTCAGCTCTTCCGTTCGTCCTTGAGATGATCTCCATGT
TGGCGTCAAGCATTGCAGCTGACCGCTTGATTGCAAGAGGGAAAATCCCC
AAGTTGTGGATAAGAAGGGGAATCGTCATCACAGGTGATGAAGCTTTCTC
TTATCAACCTTACCGTAGACCATGCATCCTTCCACAACTCTCACTTTCTG
TTGCTTAACAGCAATTTTGATAACTGTTGAGCAGTTATCAAAATTGCTGT
TAAGCAACATGATTGTGGAACTCGTTACAACCAAGTACAGTGGAAGCGTC
CTCATTAGATAGCTTTAAACAATGCATGCAGTTAAATATGCGAAGGTTAG
ACGTGACAGGTCGTTCGGTGTAATATAACCAGCTGCTTTCGCGCCGCGTG
CCTGCGAAGCTGGTGTGTTACGCCGAATGGTGGTTATGCCGGCTATATAG
ATACAGATACGGATTGTATTGACCAATGGTGTCGAGTCTGTCGACGTTAT
CGTTTATGATTGTCTCAACACAGGATGTTGCGGGATGGTGACTTGCGGAT
TGGTCCTGGCGAACCTGAGTGGATGTAACCCGGCCGTCGCTGTCGCCTTG
CTGTGTCTCCTAGAGGCCTTCTACGCCCTGACGGTAGCAGGCATGCGTGC
TGTTCATGTTGAATTCGCGCCCAGGTTCAGCGGAGTGACCTTCGCACTGG
CCAACACGGCGGGAACTCTTCCCGGCATCTTCGCTCCTCTATTGGTCGGA
TTCATAACAGAGAATGATGTGAGTACACAACATAAACAACACAATACAAT
AGAGTAGAACACAGCATAACACGACACTACAAAACATAACACATCACATC
ACGAGTTATCACAACGCAATTCAACACCGCACAGTGCGACATGGTGCCAC
ACGACACCAAACAGCATTTTTTTTCGGGGTTGATTTCGGAATCGTCCTCT
AAAATATCTAGCATAGTTCTTTTCCGTTTCAGTACACGTAATAAGCAAGG
GAAACGAAATATCATAGATTTGCTTGGAAATGTTGGCTGTACTGTTGACA
ATCATATTTACTTCGGTTGCTAGGCACCTTCAGTGTTTCTTTGATGAGCC
ATTGTTCCACAGCTTCGTTATGGTACCCACATGCTATTGAGTCAATAATG
TGAAATGTATTTTGGACCCTTCTAGCCAACCCTTGGTGCCTGGTCTAAAA
TCTTCTACATAGGAGCGGCTATCCAGGGTGTGGGAGGGATCTTCACCGTG
GTGTTCATGCGCACTGACGTCCAGCCCTGGGCTCGGGCAGAGGGCGACGA
AGAACCCAACATTAGGGATAAGGTTTGTAATGAAGAGTTTCCTTGGGTGG
CATTTGAACTTAACTAAGGGTGAATATGATATCTTAAAGTTATCTTGTAA
TGACGAGACTCAAATTTCAAATACGAACAATCGTACTGTTCATTTAGGGT
GAGGTTTAGTTAGTCAATAGGAAGGACAGAGATTTCGATTTGATTACACA
TTGTTCCGTGCTAACGTAAGATTGACATTACATCCGATAAGGACTGGATA
CCGTTGAAAAGCTGTTCTCACATGTTTTCACAGGACCTCGTCATCGCCAA
TGAACATGCCGGGATGCCAATGAAGGATGAGGAGATGCCTAGCACGAAAT
TATGAACAATCTTGCCATGATTTCATTATTCACAGATTGCTGGCAATCAA
TTCACAAAGTTGTAAAGGATGAAAAGTTAAGCTCATAATGCTTTATGCCA
TAAATGTCAATGTTGCTTGCTGCCTGTCACAAAACAATTGCAATGCGAAT
AGGCACTTTGAAAATGGTTTGAAGAAGTGAAGACATTGTCCTACAGAAGA
GAATAATGATGTGTCCTTTAATCAAGCTACATGGCAGACCGGGCGTGGAC
GCCTTTCATAACTTTTTGAATACTGAAATGTACGGGTAAATTTACTGGTG
ATCAGCATGTATTTATAGTGCTATCAATACAGGTACTGAAAGAATAGTTC
TGTCGGATGATGTGCAAAAGATCTATGTTGAGTCTTAAAAGTTCAAACAA
ACTACAGTGTTTATTTCCATGACAGCTATTACCGTGATACATGTACATAT
CAATCACCACACTAGCTATTCGAATGTTATTTTTTAAGTTTGATATAAAG
CTTGTTCAACAGCCTTTGTCATAGTTTCGACCTCCATTCAACAAAACAAA
TACAATCATATATGTGTATACCCTGTATGACGCAAGCTCAATAGTGGTGA
AGTCGTTATCTACTTGGAGTTGTCAAAAGATGAGAATAGCAATTCTTAAG
TAATCTT

Coding sequence (CDS) from alignment at Sc0000018:2689668..2693624-

>BlTCONS00037796 ID=BlTCONS00037796|Name=BlTCONS00037796|organism=Branchiostoma lanceolatum|type=CDS|length=750bp|location=Sequence derived from alignment at Sc0000018:2689668..2693624- (Branchiostoma lanceolatum)
CAGAAACCAAGAGTCCCCTGGTTGAAAGTTTTCACGTCACTTCCGGCCTG
GGCTCTCATCGTTGGACAATTCTATTCCAATTGGGCCAAATACTTTTTGC
TTACCCAACTGCCAAACTACATGAAGAATGTGCTGGGGTTCGACATCAAA
ACGAACGGCTTGCTGTCAGCTCTTCCGTTCGTCCTTGAGATGATCTCCAT
GTTGGCGTCAAGCATTGCAGCTGACCGCTTGATTGCAAGAGGGAAAATCC
CCAAGTTGTGGATAAGAAGGGGAATCGTCATCACAGGATGTTGCGGGATG
GTGACTTGCGGATTGGTCCTGGCGAACCTGAGTGGATGTAACCCGGCCGT
CGCTGTCGCCTTGCTGTGTCTCCTAGAGGCCTTCTACGCCCTGACGGTAG
CAGGCATGCGTGCTGTTCATGTTGAATTCGCGCCCAGGTTCAGCGGAGTG
ACCTTCGCACTGGCCAACACGGCGGGAACTCTTCCCGGCATCTTCGCTCC
TCTATTGGTCGGATTCATAACAGAGAATGATCCAACCCTTGGTGCCTGGT
CTAAAATCTTCTACATAGGAGCGGCTATCCAGGGTGTGGGAGGGATCTTC
ACCGTGGTGTTCATGCGCACTGACGTCCAGCCCTGGGCTCGGGCAGAGGG
CGACGAAGAACCCAACATTAGGGATAAGGACCTCGTCATCGCCAATGAAC
ATGCCGGGATGCCAATGAAGGATGAGGAGATGCCTAGCACGAAATTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00037796BlTCONS00037796-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00037796-exon-Sc0000018-1564993656:2693471..2693624BlTCONS00037796-exon-Sc0000018-1564993656:2693471..2693624Branchiostoma lanceolatumexon
BlTCONS00037796-exon-Sc0000018-1564993656:2691841..2691973BlTCONS00037796-exon-Sc0000018-1564993656:2691841..2691973Branchiostoma lanceolatumexon
BlTCONS00037796-exon-Sc0000018-1564993656:2691207..2691451BlTCONS00037796-exon-Sc0000018-1564993656:2691207..2691451Branchiostoma lanceolatumexon
BlTCONS00037796-exon-Sc0000018-1564993656:2690653..2690799BlTCONS00037796-exon-Sc0000018-1564993656:2690653..2690799Branchiostoma lanceolatumexon
BlTCONS00037796-exon-Sc0000018-1564993656:2689668..2690391BlTCONS00037796-exon-Sc0000018-1564993656:2689668..2690391Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:2689668..2693624 -
Properties
Property NameValue
GeneIDBlCUFF018628