BlTCONS00037424 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00037424
Unique NameBlTCONS00037424
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000018:3794660..3796331+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00037424 ID=BlTCONS00037424|Name=BlTCONS00037424|organism=Branchiostoma lanceolatum|type=mRNA|length=1672bp|location=Sequence derived from alignment at Sc0000018:3794660..3796331+ (Branchiostoma lanceolatum)
CCAGAAATGCAGTCATCCTGGTAGCAGTGTTTGCTGTGACAATTACCGGG
GCTCTGCTGACAAGTTTCTCGTTTTAATATAGCGACTGATAAACAGTGGA
TCAAAAATACCTAAGCTCTTTTCCTCACGAAAGCCTATCTATACCTATAA
GTCAATTTACTGACAAATGTAACCAACCGTTGATAAAATTCTACAAGTGT
CCATGCATCTGAGTTATCATGTATAGTTAGGGCATGTCATATCACCAACC
ATGTATGTGTGTGTCCACGTTTGGGACATAGCTTGGGCCATGAAGAACAT
TGTAAGTGTGAGTGCGGATAGTAGCCAAACAGCACGATCTTTGTTGTCCT
TGCAATGTACACAAAGAGAGGTCAGCGCGGTTTGTGCCCTTTGGTGGGAA
TCAACTCTCGCCCACGTTTAATGATTAAAGATGGCCGGACAAGAGTGGCA
TCGAATGTTGGCTCGTACTCTCTATATCGGGCTGATTCTTTACGCCTTAG
TTGCGGCCTGTGACTGTGGATACGGTGAGTTCATCTTTCTTACATGTCAC
ACGTTTGGGCTAGAAATTTCGTTAGGCCCGCAGAGTGACGACAAAACACT
GTTTTATCGTAAAGTTGGACAGGTGCACTTTGGCCCCTCACAAGACAAGT
CAACAAGCGGCTGTTCTAGTGGGGGGGGGGGTATACAGTACGAGCAAAAT
GATACTTTCGGAGACCTTGATCTAGGACGAAAATCTCTCTCTCTTTATGT
ATATATATATATGAACATCCTTTTGCATTATCGCCGATTGTATACACTTG
TGTAAACGTGTCGTTACTATTGATAGCCTTTCTGCTGATATTCTAGACTT
CAAAATAAAACAAACAATTGAGACGATGTCAAATTCCCACGACCTCTAAA
GAACTGATACAAGTTATGGCTCGAGTCAAGACTTGGGACACGAGATTGCA
AGCCACGTTTCACTCCGATGATCTAAAGTTAATGTATGGTTTATCATCTG
TAGGGGAACAACAAAACGTTCATCCGGCAGGTGTACGGTTACGCATGTAG
CCGGTGAAATTGTTAAAAGTATTTGTCAACTTGAGAAGTTTTCTTCCTTC
AAACTTGGTCATCAAATGCATAGTCTTTGATCACTCTTCAGTCCGAAACG
AAGAGGATACACCGGCGACGCTGTATCAGGACAACGCAACAACCGAGTCA
TCAACGACAGTCGTCCCGGCATCTCTAACCCCGAGTAACACCACCAAAGA
TGAGACCTATCTGGGGTTCATAGCGGCAGCTGTGTCCGTTGTGTTCTTTG
GAAGCAACCTCGTACCTATCAAGAAAGTGGACACGGGCGATGGTAGGCTG
CTTCAGAGACTTATCAACCTTTGAATGATGACTTTCAGCAACAACAACAC
ACAACATTACTGATTTAGTGTTAATATCCTACATGGATACAACATATACA
TAGTAATTCAGTTGACAGATCATTCAGCTTGTACTTGTACTGCAACTTGA
CAGCAATGTTAAAGAATCTTGAATGATCGAATGATTCTAAGCGTAATGAT
GATTAATGATGATGTCTACTGTTACAGGCATGTTCTTCCAGTGGGTGTTC
TGCTCGGCCATCTGGTGTGTAGGTCTGGTGGTGAACGTTATCCAGGGTTA
CCCCAAGTTTTATCCCATTTCT

Coding sequence (CDS) from alignment at Sc0000018:3794660..3796331+

>BlTCONS00037424 ID=BlTCONS00037424|Name=BlTCONS00037424|organism=Branchiostoma lanceolatum|type=CDS|length=390bp|location=Sequence derived from alignment at Sc0000018:3794660..3796331+ (Branchiostoma lanceolatum)
ATGGCCGGACAAGAGTGGCATCGAATGTTGGCTCGTACTCTCTATATCGG
GCTGATTCTTTACGCCTTAGTTGCGGCCTGTGACTGTGGATACGTCCGAA
ACGAAGAGGATACACCGGCGACGCTGTATCAGGACAACGCAACAACCGAG
TCATCAACGACAGTCGTCCCGGCATCTCTAACCCCGAGTAACACCACCAA
AGATGAGACCTATCTGGGGTTCATAGCGGCAGCTGTGTCCGTTGTGTTCT
TTGGAAGCAACCTCGTACCTATCAAGAAAGTGGACACGGGCGATGGCATG
TTCTTCCAGTGGGTGTTCTGCTCGGCCATCTGGTGTGTAGGTCTGGTGGT
GAACGTTATCCAGGGTTACCCCAAGTTTTATCCCATTTCT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00037424BlTCONS00037424-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00037424-exon-Sc0000018-1564993656:3794660..3795183BlTCONS00037424-exon-Sc0000018-1564993656:3794660..3795183Branchiostoma lanceolatumexon
BlTCONS00037424-exon-Sc0000018-1564993656:3795801..3796001BlTCONS00037424-exon-Sc0000018-1564993656:3795801..3796001Branchiostoma lanceolatumexon
BlTCONS00037424-exon-Sc0000018-1564993656:3796237..3796331BlTCONS00037424-exon-Sc0000018-1564993656:3796237..3796331Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:3794660..3796331 +
Properties
Property NameValue
GeneIDBlCUFF018374