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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000017:3165783..3174627+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00036046 ID=BlTCONS00036046|Name=BlTCONS00036046|organism=Branchiostoma lanceolatum|type=mRNA|length=8845bp|location=Sequence derived from alignment at Sc0000017:3165783..3174627+ (Branchiostoma lanceolatum)
CAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGAACC
GTAGTGTAAATAACAATGTAGTGCAGTCGTGGTGATTGTCACAGACCGCT
TCACCGCACTGATGCTGCCATTTCGCTACACGACCTGGGCCAGGCCGGGC
AGAGCTGTCTGTGGTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGCTTG
ACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAATAA
CAATGTAGTGCAGTCGTGGTGATTGTCACAGACCGCTTCACCGCACTGAT
GCTGCCATTTCGCTACACGACCTGGGCCAGGCCGGGCAGAGCTGTCTGTG
GTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGCAG
TAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAATAACAATGTAGTGCAG
TCGTGGTGATTGTCACAGACCGCTTCACCGCACTGATGCTGCCATTTCGC
TACACGACCTGGGCCAGGCCGGGCAGAGCTGTCTGTGGTTTAGTCGCCAT
TACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCTTTCAA
ACTTAGGAACCGTAGTGTAAATAACAATGTAGTGCAGTCGTGGTGATTGT
CACAGACCGCTTCACCGCCCTGATGCTGCCATTTCGCTACGTGACCTGGG
CCAGGCCGGGCAGAGCTGTCTGTGGTTTAATCGCTATTACTGTCTTCTCA
GTAAGTGCTTTGAAAATCAGCAAAGTAGTGTAAACAACAATGCAGTGCAG
TGGTAGTGATTGGGGCACATCGCTTCACCGCCCTGATGCTGCGTAAATAA
CAATGTAGTGCCTAGGGTCACATAGGGCAGCAAGTTTCCTTGCTGTTACA
GTAGTGGGGTATGTTTTTACAAGGAGAGTTTGCTAGCCCGCCCCCTTCAA
AGTGCTCGAGGCACCTCCTTTAACACGGGACCCATTTTATGTTCCTTCCG
AAAGACGGGAGCAGCCCCAACTGAGATGTCCCCAACCCAGGATTGAACCA
TGGTCTCCTAGTTACCAACTAATTGGAACCAGGAGCTCAACTGTGATGCT
GCTACTAGTTGAGCTACATGGACATCCCTAAACACCAACATATACCTGGT
TAATGACATGGATGCAACATTTGGCAGTAGCATATATCTACTTTCAAATC
CTGTTTTTGTGCAGCGTTCAGATGAATTTGCCCAAGCAAATATCTCCTGT
CTCCACCATATTCTAAAAGTTGCACATTTAAAGGTTCAGAAGTTCTAAAA
TGCAACTACCGAAATGTGGTTCTTATCATTCCATGCATGATTCCTAAATT
CCTAGACATGTCTAAGCCAAATTGATGATTCTAAAATTATACCGCAAAGG
CCCAAAATGTTCATTAGAATTAAGTGACATCAAAAAGGGAGAATGAACGA
ATTTCAGATATTATACCGGCGTGTCTTCATCTGTAGAATCTATTGTTTCC
AATTAAGTCTATTACTGTTTTACATTAGAGATAACCTGCAGAAAACTTGC
TTTCGTCCTCATTTTTTGTCGTGTGTTTCACAGGCGGTGTTCGCGGTTCT
ACCCCTTCTGGACGTCGTTTCCGTGGTCCCGATCTTTGACGTTGTCTGTT
CCTTCGACTGGGCTGACTCCAGTGCTTCTGGCCGCTTCTACATCTATTGG
GTTATTGTGCAGGGTACGTATAGTTAGATCCCAATTGGAAAAATACCTTT
CGGGTGTGACCCCTACGTGGCCCCGTGGGACACACTGCGGCTGCCGGGCT
ATATTTTGGTCCGGCCGGGACCCTGAATCATTTTAACTCGGACTTAATCA
ACGCGGGGCCCGGTAACAAATATACACAGTGAGCTAATCGTGCGAACACC
AGGATATCATGATGAAAGCACCATTGATGCATTAATGAGTGTGGCCCTAC
AGAATACATGCTCTCCTTCTTACTTCTAGGTTGTGTGTTGATCGCTATTT
TGTTGGCGATGAACGTTTTCGTCATCATCGAGGTTCGGCGCATGAACAGT
CGGGTGGAGCGGGTGCCCCTGTCCGAGAAGGAGGGGGAGACAAGGCGGGG
GCGGCGGGGGCAGGAAAAGTACTCCGAGTTCACCATACTCGTCATCATGG
TGTCCGTTGTGTTCATCGTCTGCACAGCGCCGATCTTGGTAAGGGCCAGG
TCTTACATTTGTCGTGCGACACCGTTGCGGAGGCCGTTCTTTTTTAAATT
TTTTTTTTCATTCAACCAACAAAACTAAGACATAAAAACCATGCAGCAGA
AACCTTACCATAAAATAAGTAATCAGTTGTGCATAATATAAATGAGGGTC
AGCAAATCAACAGAAACGTATTGTTTAATCAAATACATAATGTGCCCCCT
TTACCCCGTATCTCTCCAGTTTTCTTTTTCTAACCGCAATATGATATTCG
ACTTTATCAAAGAAATAAACATATCGAAGAAAAGCTTCAAAAGTCAAGTT
GTTGAACTTTCTAAAAGGGTATATGAAAATTTATGGCTAAAACAATAATG
AGATCACAGGGAGTAGATTTCCGGAAATAACAACAAAACCACTTAAACGA
ATATTTTGACCTGTTTTTTTGAAGTGCGAGGTTTTGATTTTATCCCCAAA
CGTCTCCGATAGACTATATGCAATAGTCTGTTTGTAGGTAAAAGTTCATA
TTGAAAGCACATGGTTGGTGGGTCAATAGCACAGTAAATTAAGGAGGTAT
ATATTTGTTTCCAAGGTATATAGATAAGAGTGTAATGTAGTGTAGTGTAG
TGTTGTATAGTGTAGTGTAGTGTAGTGTAGTATAGTGTAGTATAGTATAG
TGTAGTGTAGTGTTGTGTAGTGTTGTGTAGTGTAGTGTAGTGTAGTGTAG
TATACTATTGTATAGTGTAGTGTGGTGTACTGTATTGTAGTGAAGTGTAG
AAAACGTATGAATAGTCTTCTTTTGAGATTACAAAGATGAAAATTCTCAT
ACAAGGATGACAAATGACTACTAAAGAAGACAGTTAGAAATTCAATGTAA
ATATTCAATGTAAAAGCATGTTGTCTAAAGTGCTCACTTGTCAAAATTGT
CATATTTGGGATAGGATTGGCCTGTTATAAACTATAGTTTGTGGGAAACC
ATTGCTACAATGCTATCATCGGTCACTGACAAAGGCAACACATAGCCCCA
TGTCTCGGTCTCCCACGGTACCCCCCCCCCCAAACAGCTTCTGCATGGAG
GCTATAGTTGGTAACAACACAATTAAATATTATTTCATCCAAGAAGTAAG
TCCATACAATTTAGAATGCAGACAGTTTCCATTGATTTTTTTGGGTTCTA
TACAAAACTGATTTTATCAAAATAACCTCGTTGCCTTTATCAAACACCCA
CTACTGCTTTCCACAATCAATGGGCATCGTTGTGTACATGGAGATGAATA
CAACCCCTATGGGTTTTTAATCAAAGTTGGTTTACTTCAAAAGCTGGTCC
GCTAAAAATAACTCCCTTGTAGCTATATAGGCAATCTAAATGTATCTAGT
AATCCAATTACACATCACAATCTGTTATATAAAATGTTTTTACCATCTGC
CGTTCCTTGCAAGTAGACTACATGTATATACGGTTTGATTGAAGTATGAA
CGTTTAGATTTTCGTACAGCAAGAAAAAAATCTATATCACCAAAACAAAT
TTTCTATCGAAACGTTGGACTTCCTCAAGTTGTACTGCCCCACTTTGCGT
TGACACGTGACCAGAAAATGTGACGTCAGCAATGAATTTAGGTGATCTGA
AGTTCTCTCTATACTAGCTATATCATCATGTGTTTTTGTTGTTGTTGTTT
TTGTTTTGCATGACTGGTAAACCGCCTTTAGTAACGCACCAGTTTTGTGC
AATAGGTACAAGCTGGCCCAGATTTAGCGTTCCAGGGAGTTGCACTTATT
GTAGGTCGGCAGGAAGAACTGCCTGAGCTGCCGAACAAATTCTCTGGCGG
GTCCTGCTAGAGTCTGGTCCCCAGGGTAGGGTCCTCGGAAGGACCCTTAC
TCTATTTTATAGTTCGGTGGGATTTTTAACGTGCTCAAGGTGTGGCTCTC
CTCAAACACAGGGCCTCCGGACCGTTACGTCCTATCCGAGAGAACGTTGC
TTGGACTCTTGAAAAACGGCCAAGGCCAAAGAGAATGTAATCTTTCAGGC
TAAATAAAGGTTGGAAAAGACCGAAGCTAGGTGCTCATTTTGACCTGAGT
CAAGTGAGGAAATAGGTGTCAACTGGTTGGTGATCCTGATTGGCAATATG
CTGCCTCTTATCCAATTTTAATGAAATATGAAATATGAAATATGAAATAT
GAAATATGAAATATGAAATATGAAATATGAAATATGAAATATGAAATATG
AAATATGAAGTATGAAGTATGAAGTATGAAGTATGAAGTATGAAGTATGA
AGTATGAAGTATGAAACATGAAACATGAATCATGAAACATGAAACATGAA
ACATGAAACATGAAACATGAAACATGAAATATGAAATATGAAATTTGAAA
CATGAGATATGATTCTTTTCCCAGGTAAGGACACTGTTTAACCAGCTGGA
CATCCTGCCGTCCAAGAGCGCTGACTACGCGGCGAAGCGACTCAGTATCA
TCGGCAGCATGATCAACCCACACCTGTACTGGACATTCCGTCCCAAGGCC
AGAAAGGCCATCATCAAGTTCGTCAGGTAACAAAACCTGCCATGTAGCGA
AACGACGTATGCCATGTAGCGAAACGACTTATGCCATGTAGCGAAACGAC
GTATGCCATGTAGCGAAACGACTTATGCCATGTAGCGAAACGACTTATGC
CATGTAGCCAAACGACTTCTGCCATGTGACGACACGACGTATGCAATGTA
GCGAAACGACTTATGCCATGTAGCGAAACGACTTATGCCATGAGCGAAAC
CACTTATGCCATGTATACGTAGCGAAACGACTTATGCCATATAACAAAAC
GACTTATGCCATGTAGCAAAACGACTTATGCCATGAAGCGAAACGACTTA
TGCCATGAAGGGAAACGACTTATTCTATGTAGCGAAACGACTGTAGCGTA
CTGACTATGTAGCAAAACGACCGGTCACATTTAGATGCATGGATTTTCAG
TAATTTGGGGAAAATCAGCGATTTTGGCGTGCTCTTTTACTTATCTCCCT
AATATATGAGTTATTCTAAATGTTTGACGTTAGGGCATCACAGACGGTGT
GGCAACCAGTTGTCTCCGCCCTTCTCGGTTTTCTGTTTCTCTTGATGTTT
CACTTAATGTCATTGTAATGAACCCACTAAGACATATGTAAGACCATTAT
TTAGTAATTGTAACCCCCCCTTCATGAAAGTGTAATAGTCCAAGGCTGCC
TCGTTCTGAGAAAGACCCAGGCTGTCATTCTATGTGTTGGAATCCTGGGG
GTCAGGAATAAACCATGTAGCTCCACAATCTCTGTCTTGGCTCCCTGTAT
CTGTGTCCAATGACCTCAACATCGGTCCATAACATATGGCGTCACGGACA
GGATTCACAGTATACTATGGGTTGCCAACATGTCGTACAACGTGGAGGAG
GGTATGAATTGTATCCAGTCTCCAAACTCCACTGACAGCACGGATGGTCA
AGTTGGCTTGTCGATCTCGTCGGGTGGAACCAGGCTAGCGAATGCGGCAC
TGTATCCAGTCTCCAACGTCCACTGTCAGCAACGGGCGGTCACGCAAGCT
TCTAGTCGTCGGGTGGATCAGAGAGGTGAATTTTTTGCTTTCCATCTCCA
GAGTCTGCTGACAGAACGGTTAGTCAAGTACGCTGCCGAACTCGTCGGGT
GGAATCGGGAGCGAGAGAATGCAGGGACGTGTCCAGTCTTCAGGGTCCAC
TGCCAGCAACGGGCGGCCGAGCAAGCTTCCAGTCGTCGGGTGGGATTGAG
AGGCCAAGGAACATTCTGGAATCTTCCATCGTTAGTATCAGGGATCGTGT
GCAAGCTGAAGACTCCCAGAACAATATACTCCTCACCAGACTCTACTGTT
GTATGCACCATCTACAGACTGTTCCCTTTATAATCATATGCTGGCGCAGG
GACATTTGACTCTTTACAGTGAGATTTACCCCTGAGTTTAATCTGTGTTT
AACTTTTACTCGTCTGATGTAACATTGCTTTGTAAAGTTCAGTTTTGCCA
TGCCACGTGGCCAGAAATCATGCCCAGACTTGCTCCTTTGTCTGGTTGTT
GTTGTAATGTGAGTCTCAGTGACCCACATCTGGTATTCATTTCCTGTTTC
ACTCACCATGGGCTGCTTATCACAAATAACAGAGTACCAAAGAAAACACT
TCTAAGTTTAGATACTACATCAATATTGTCCTCATAACATGCAAGATGTT
GCTCGATACATTCCTTTGTTTGATTGTAAGACTCTTCAAGTTCATACTAT
GGTAGCCGATTGTGTTTCAGAGTGCCCAACATTCAATCTGGATCTCTTTG
TTAGCCAGGGTTTGTTGTCTGAAGTATTGATCGCTACACAATAGTTTTTG
CCATGTCTCTTACATCAAACTCCGTCCTAATATTTTACATGTTGCTCGAT
ACAAATCCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATCGCTACACAATAGTTTTTGCCATGTCTC
TTACATCAAAATCTGTCCTAATATTTTACATGTTGCTCGATACAATTCCT
TTGTTTGATTGTAAGTAAGACTTTTCAAGTTCATACTATGTTAGCCGATT
GTGCTTTAGTGTGCCCAACATTCAATCTGGATCTCTTCGTTAGCCAGGGT
TTGTTGTCTGAAGTAACTCAAATCGCTACACAACAGTTTTTGCCACGTCT
TATTTTACAACATATTCTGAACAAAGGTACATACACTGTCTTGTTTTCTG
CAGTTTGATATAATTCGTGTGTAACGATATACTTGATATGTAGATTGTAA
CTAGTTAACTTAGTGGCTTCATTTGTTTATCATTCTTCGAATTGACCTTG
TCAATCCTCTTGTGTAAAGGGGAGGCATGTAATGAACCCACTAAGACACA
TGTAAGACCATTATTTAGTAATTGTAACCCCCCCTTCATGAAAGTGTAAT
AGTCCAAGGCTGCCTCGTTCTGAGAAAGACCCAGGCTGTCATTCTATGTG
TTGGAATCCTGGGGGTCAGGAATAAACCATGTAGCTCCACAATCTCTGTC
TTGGCTCCCTGTATCTGTGTCCAATGACCTCAACATCGGTCCATAACAGT
CATGCCTATCCATTCTCTGATATCATCCTCCTAGTCTGATTCAAATTGCT
CTTATACCTGTAATTTATTGAAGAATATAAAGAGGTCACTTTCCTTGTTA
AGAGAACATGTCTACATTTCCTTCCAGGGAGAAATGTAACCGCCTGAAAC
GGCCCGGCAACGACAACGACAGTCCCGACGACGGAGACAAGACTGTCGAG
GCCTCCCTGGCGGCTACACATGCGGACCTAAGCCAGAATCAAAACATGAT
TGTTCTCAAAGAGATCCTCGCAGATCCCATCAAAGTGAAACAAATCGCAG
ACGAACTGGAGATTCCAACCAAGGTCACCAGATGTCATGGAAACCAAAGC
CACAAGATGGCGTTAGTCGCGGAGGTTGGCTACCCCGGACTTTGCGATAT
TGAGCTCGAACAAGACTTTCTACGAAAAAAAGAACCTCTAAGCCGAGTCA
GTGAAGTAGACATAAAAGTCACCTAGAGTCAGAAAACTTTCGAAGAGGTC
GAAATGGGCAGCTACAAAGGATATACTGGCCATATTTCATAATTAAAAAG
GTATTATTTTTGTATATAGATACGACCACTAATTTGGAGAAATTCTCAAG
CAATATATTCTCAATTCTCGACCGAAAATGGGTTAATCTATTCGAAAAAG
TTGTTAAAAGTACTCTAGACATATGTCAAGGCGTGGCTTTGAAGTCTACA
TGTATTTTTGTAACCTAACCTAACCTAGCTTAGGAGATGGCGAAGTATCT
TAGAATCATCTTAGAGATGCAGAGAGTATAGACATGTAGCGAAACGACGT
ATGCCATGTAGCGAAACGACTTATGCCATGTAGCGAAACGACTTATGCCA
TGTATTCAAATTCAAATGACAATTGCGGAAGACCGTCACAAACACCAAGT
GACTACATATTGACCTAATAGGCAATAAACAAAGGCGCCTCAAACAAAAC
AAAACAAAGCAAAACTCTGCATTTAAAAACATTTGACATCATGACGGTTT
ATGACTCCATACTCTGCTACCTCGTAGGCTAGGTGTCAGAGAGACGCCAG
AAGAGAAAATTACGGACGACCGCTGGTTGGTCGGCTGCCACTATTTTGAT
GACGTAGGATGACGTAGATTGTACCCGAGTACTTTAAAGACTGATACTTT
TTGACCATGTATGTATGTATGTATGTATGTATGTATGTATGTACCTTATG
ACATTTTTGACGCAGGTCACTCCTCAACCAAAGTATATTGCACCTTACAG
TTGAAAAGGGAATAGAGTATTATTTCTTCGTATTCGTTGACATTTTAGGA
AAATGAAAGAAAATTTTGTAATATTTTTGTGGATGCAACGTTTGGTTGTC
TAGTTTATGTTGTACTATATTAAAGCATTTGTATAACTTTGGTAATTTAT
CTATCATTAGGAGAGGAGGATCAGAGAAGATTCGATGTTTTCTAAATATT
GTCTATTATTAATATGTGATATTGTGTTATTGAAAATGATCAAAC Coding sequence (CDS) from alignment at Sc0000017:3165783..3174627+ >BlTCONS00036046 ID=BlTCONS00036046|Name=BlTCONS00036046|organism=Branchiostoma lanceolatum|type=CDS|length=840bp|location=Sequence derived from alignment at Sc0000017:3165783..3174627+ (Branchiostoma lanceolatum)
GCGGTGTTCGCGGTTCTACCCCTTCTGGACGTCGTTTCCGTGGTCCCGAT
CTTTGACGTTGTCTGTTCCTTCGACTGGGCTGACTCCAGTGCTTCTGGCC
GCTTCTACATCTATTGGGTTATTGTGCAGGGTTGTGTGTTGATCGCTATT
TTGTTGGCGATGAACGTTTTCGTCATCATCGAGGTTCGGCGCATGAACAG
TCGGGTGGAGCGGGTGCCCCTGTCCGAGAAGGAGGGGGAGACAAGGCGGG
GGCGGCGGGGGCAGGAAAAGTACTCCGAGTTCACCATACTCGTCATCATG
GTGTCCGTTGTGTTCATCGTCTGCACAGCGCCGATCTTGGTAAGGACACT
GTTTAACCAGCTGGACATCCTGCCGTCCAAGAGCGCTGACTACGCGGCGA
AGCGACTCAGTATCATCGGCAGCATGATCAACCCACACCTGTACTGGACA
TTCCGTCCCAAGGCCAGAAAGGCCATCATCAAGTTCGTCAGGGAGAAATG
TAACCGCCTGAAACGGCCCGGCAACGACAACGACAGTCCCGACGACGGAG
ACAAGACTGTCGAGGCCTCCCTGGCGGCTACACATGCGGACCTAAGCCAG
AATCAAAACATGATTGTTCTCAAAGAGATCCTCGCAGATCCCATCAAAGT
GAAACAAATCGCAGACGAACTGGAGATTCCAACCAAGGTCACCAGATGTC
ATGGAAACCAAAGCCACAAGATGGCGTTAGTCGCGGAGGTTGGCTACCCC
GGACTTTGCGATATTGAGCTCGAACAAGACTTTCTACGAAAAAAAGAACC
TCTAAGCCGAGTCAGTGAAGTAGACATAAAAGTCACCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00036046-exon-Sc0000017-1564993656:3165783..3165784 | BlTCONS00036046-exon-Sc0000017-1564993656:3165783..3165784 | Branchiostoma lanceolatum | exon |
| BlTCONS00036046-exon-Sc0000017-1564993656:3167366..3167495 | BlTCONS00036046-exon-Sc0000017-1564993656:3167366..3167495 | Branchiostoma lanceolatum | exon |
| BlTCONS00036046-exon-Sc0000017-1564993656:3167762..3167970 | BlTCONS00036046-exon-Sc0000017-1564993656:3167762..3167970 | Branchiostoma lanceolatum | exon |
| BlTCONS00036046-exon-Sc0000017-1564993656:3170357..3170508 | BlTCONS00036046-exon-Sc0000017-1564993656:3170357..3170508 | Branchiostoma lanceolatum | exon |
| BlTCONS00036046-exon-Sc0000017-1564993656:3173260..3174627 | BlTCONS00036046-exon-Sc0000017-1564993656:3173260..3174627 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:3165783..3174627 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF017648 |
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