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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000017:3165768..3174627+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00036045 ID=BlTCONS00036045|Name=BlTCONS00036045|organism=Branchiostoma lanceolatum|type=mRNA|length=8860bp|location=Sequence derived from alignment at Sc0000017:3165768..3174627+ (Branchiostoma lanceolatum)
CCATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCTT
TCAAACTTAGGAACCGTAGTGTAAATAACAATGTAGTGCAGTCGTGGTGA
TTGTCACAGACCGCTTCACCGCACTGATGCTGCCATTTCGCTACACGACC
TGGGCCAGGCCGGGCAGAGCTGTCTGTGGTTTAGTCGCCATTACTGTCTT
CTCAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGAA
CCGTAGTGTAAATAACAATGTAGTGCAGTCGTGGTGATTGTCACAGACCG
CTTCACCGCACTGATGCTGCCATTTCGCTACACGACCTGGGCCAGGCCGG
GCAGAGCTGTCTGTGGTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGCT
TGACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAAT
AACAATGTAGTGCAGTCGTGGTGATTGTCACAGACCGCTTCACCGCACTG
ATGCTGCCATTTCGCTACACGACCTGGGCCAGGCCGGGCAGAGCTGTCTG
TGGTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGC
AGTAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAATAACAATGTAGTGC
AGTCGTGGTGATTGTCACAGACCGCTTCACCGCCCTGATGCTGCCATTTC
GCTACGTGACCTGGGCCAGGCCGGGCAGAGCTGTCTGTGGTTTAATCGCT
ATTACTGTCTTCTCAGTAAGTGCTTTGAAAATCAGCAAAGTAGTGTAAAC
AACAATGCAGTGCAGTGGTAGTGATTGGGGCACATCGCTTCACCGCCCTG
ATGCTGCGTAAATAACAATGTAGTGCCTAGGGTCACATAGGGCAGCAAGT
TTCCTTGCTGTTACAGTAGTGGGGTATGTTTTTACAAGGAGAGTTTGCTA
GCCCGCCCCCTTCAAAGTGCTCGAGGCACCTCCTTTAACACGGGACCCAT
TTTATGTTCCTTCCGAAAGACGGGAGCAGCCCCAACTGAGATGTCCCCAA
CCCAGGATTGAACCATGGTCTCCTAGTTACCAACTAATTGGAACCAGGAG
CTCAACTGTGATGCTGCTACTAGTTGAGCTACATGGACATCCCTAAACAC
CAACATATACCTGGTTAATGACATGGATGCAACATTTGGCAGTAGCATAT
ATCTACTTTCAAATCCTGTTTTTGTGCAGCGTTCAGATGAATTTGCCCAA
GCAAATATCTCCTGTCTCCACCATATTCTAAAAGTTGCACATTTAAAGGT
TCAGAAGTTCTAAAATGCAACTACCGAAATGTGGTTCTTATCATTCCATG
CATGATTCCTAAATTCCTAGACATGTCTAAGCCAAATTGATGATTCTAAA
ATTATACCGCAAAGGCCCAAAATGTTCATTAGAATTAAGTGACATCAAAA
AGGGAGAATGAACGAATTTCAGATATTATACCGGCGTGTCTTCATCTGTA
GAATCTATTGTTTCCAATTAAGTCTATTACTGTTTTACATTAGAGATAAC
CTGCAGAAAACTTGCTTTCGTCCTCATTTTTTGTCGTGTGTTTCACAGGC
GGTGTTCGCGGTTCTACCCCTTCTGGACGTCGTTTCCGTGGTCCCGATCT
TTGACGTTGTCTGTTCCTTCGACTGGGCTGACTCCAGTGCTTCTGGCCGC
TTCTACATCTATTGGGTTATTGTGCAGGGTACGTATAGTTAGATCCCAAT
TGGAAAAATACCTTTCGGGTGTGACCCCTACGTGGCCCCGTGGGACACAC
TGCGGCTGCCGGGCTATATTTTGGTCCGGCCGGGACCCTGAATCATTTTA
ACTCGGACTTAATCAACGCGGGGCCCGGTAACAAATATACACAGTGAGCT
AATCGTGCGAACACCAGGATATCATGATGAAAGCACCATTGATGCATTAA
TGAGTGTGGCCCTACAGAATACATGCTCTCCTTCTTACTTCTAGGTTGTG
TGTTGATCGCTATTTTGTTGGCGATGAACGTTTTCGTCATCATCGAGGTT
CGGCGCATGAACAGTCGGGTGGAGCGGGTGCCCCTGTCCGAGAAGGAGGG
GGAGACAAGGCGGGGGCGGCGGGGGCAGGAAAAGTACTCCGAGTTCACCA
TACTCGTCATCATGGTGTCCGTTGTGTTCATCGTCTGCACAGCGCCGATC
TTGGTAAGGGCCAGGTCTTACATTTGTCGTGCGACACCGTTGCGGAGGCC
GTTCTTTTTTAAATTTTTTTTTTCATTCAACCAACAAAACTAAGACATAA
AAACCATGCAGCAGAAACCTTACCATAAAATAAGTAATCAGTTGTGCATA
ATATAAATGAGGGTCAGCAAATCAACAGAAACGTATTGTTTAATCAAATA
CATAATGTGCCCCCTTTACCCCGTATCTCTCCAGTTTTCTTTTTCTAACC
GCAATATGATATTCGACTTTATCAAAGAAATAAACATATCGAAGAAAAGC
TTCAAAAGTCAAGTTGTTGAACTTTCTAAAAGGGTATATGAAAATTTATG
GCTAAAACAATAATGAGATCACAGGGAGTAGATTTCCGGAAATAACAACA
AAACCACTTAAACGAATATTTTGACCTGTTTTTTTGAAGTGCGAGGTTTT
GATTTTATCCCCAAACGTCTCCGATAGACTATATGCAATAGTCTGTTTGT
AGGTAAAAGTTCATATTGAAAGCACATGGTTGGTGGGTCAATAGCACAGT
AAATTAAGGAGGTATATATTTGTTTCCAAGGTATATAGATAAGAGTGTAA
TGTAGTGTAGTGTAGTGTTGTATAGTGTAGTGTAGTGTAGTGTAGTATAG
TGTAGTATAGTATAGTGTAGTGTAGTGTTGTGTAGTGTTGTGTAGTGTAG
TGTAGTGTAGTGTAGTATACTATTGTATAGTGTAGTGTGGTGTACTGTAT
TGTAGTGAAGTGTAGAAAACGTATGAATAGTCTTCTTTTGAGATTACAAA
GATGAAAATTCTCATACAAGGATGACAAATGACTACTAAAGAAGACAGTT
AGAAATTCAATGTAAATATTCAATGTAAAAGCATGTTGTCTAAAGTGCTC
ACTTGTCAAAATTGTCATATTTGGGATAGGATTGGCCTGTTATAAACTAT
AGTTTGTGGGAAACCATTGCTACAATGCTATCATCGGTCACTGACAAAGG
CAACACATAGCCCCATGTCTCGGTCTCCCACGGTACCCCCCCCCCCAAAC
AGCTTCTGCATGGAGGCTATAGTTGGTAACAACACAATTAAATATTATTT
CATCCAAGAAGTAAGTCCATACAATTTAGAATGCAGACAGTTTCCATTGA
TTTTTTTGGGTTCTATACAAAACTGATTTTATCAAAATAACCTCGTTGCC
TTTATCAAACACCCACTACTGCTTTCCACAATCAATGGGCATCGTTGTGT
ACATGGAGATGAATACAACCCCTATGGGTTTTTAATCAAAGTTGGTTTAC
TTCAAAAGCTGGTCCGCTAAAAATAACTCCCTTGTAGCTATATAGGCAAT
CTAAATGTATCTAGTAATCCAATTACACATCACAATCTGTTATATAAAAT
GTTTTTACCATCTGCCGTTCCTTGCAAGTAGACTACATGTATATACGGTT
TGATTGAAGTATGAACGTTTAGATTTTCGTACAGCAAGAAAAAAATCTAT
ATCACCAAAACAAATTTTCTATCGAAACGTTGGACTTCCTCAAGTTGTAC
TGCCCCACTTTGCGTTGACACGTGACCAGAAAATGTGACGTCAGCAATGA
ATTTAGGTGATCTGAAGTTCTCTCTATACTAGCTATATCATCATGTGTTT
TTGTTGTTGTTGTTTTTGTTTTGCATGACTGGTAAACCGCCTTTAGTAAC
GCACCAGTTTTGTGCAATAGGTACAAGCTGGCCCAGATTTAGCGTTCCAG
GGAGTTGCACTTATTGTAGGTCGGCAGGAAGAACTGCCTGAGCTGCCGAA
CAAATTCTCTGGCGGGTCCTGCTAGAGTCTGGTCCCCAGGGTAGGGTCCT
CGGAAGGACCCTTACTCTATTTTATAGTTCGGTGGGATTTTTAACGTGCT
CAAGGTGTGGCTCTCCTCAAACACAGGGCCTCCGGACCGTTACGTCCTAT
CCGAGAGAACGTTGCTTGGACTCTTGAAAAACGGCCAAGGCCAAAGAGAA
TGTAATCTTTCAGGCTAAATAAAGGTTGGAAAAGACCGAAGCTAGGTGCT
CATTTTGACCTGAGTCAAGTGAGGAAATAGGTGTCAACTGGTTGGTGATC
CTGATTGGCAATATGCTGCCTCTTATCCAATTTTAATGAAATATGAAATA
TGAAATATGAAATATGAAATATGAAATATGAAATATGAAATATGAAATAT
GAAATATGAAATATGAAATATGAAGTATGAAGTATGAAGTATGAAGTATG
AAGTATGAAGTATGAAGTATGAAGTATGAAACATGAAACATGAATCATGA
AACATGAAACATGAAACATGAAACATGAAACATGAAACATGAAATATGAA
ATATGAAATTTGAAACATGAGATATGATTCTTTTCCCAGGTAAGGACACT
GTTTAACCAGCTGGACATCCTGCCGTCCAAGAGCGCTGACTACGCGGCGA
AGCGACTCAGTATCATCGGCAGCATGATCAACCCACACCTGTACTGGACA
TTCCGTCCCAAGGCCAGAAAGGCCATCATCAAGTTCGTCAGGTAACAAAA
CCTGCCATGTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGCC
ATGTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGCCATGTAG
CGAAACGACTTATGCCATGTAGCCAAACGACTTCTGCCATGTGACGACAC
GACGTATGCAATGTAGCGAAACGACTTATGCCATGTAGCGAAACGACTTA
TGCCATGAGCGAAACCACTTATGCCATGTATACGTAGCGAAACGACTTAT
GCCATATAACAAAACGACTTATGCCATGTAGCAAAACGACTTATGCCATG
AAGCGAAACGACTTATGCCATGAAGGGAAACGACTTATTCTATGTAGCGA
AACGACTGTAGCGTACTGACTATGTAGCAAAACGACCGGTCACATTTAGA
TGCATGGATTTTCAGTAATTTGGGGAAAATCAGCGATTTTGGCGTGCTCT
TTTACTTATCTCCCTAATATATGAGTTATTCTAAATGTTTGACGTTAGGG
CATCACAGACGGTGTGGCAACCAGTTGTCTCCGCCCTTCTCGGTTTTCTG
TTTCTCTTGATGTTTCACTTAATGTCATTGTAATGAACCCACTAAGACAT
ATGTAAGACCATTATTTAGTAATTGTAACCCCCCCTTCATGAAAGTGTAA
TAGTCCAAGGCTGCCTCGTTCTGAGAAAGACCCAGGCTGTCATTCTATGT
GTTGGAATCCTGGGGGTCAGGAATAAACCATGTAGCTCCACAATCTCTGT
CTTGGCTCCCTGTATCTGTGTCCAATGACCTCAACATCGGTCCATAACAT
ATGGCGTCACGGACAGGATTCACAGTATACTATGGGTTGCCAACATGTCG
TACAACGTGGAGGAGGGTATGAATTGTATCCAGTCTCCAAACTCCACTGA
CAGCACGGATGGTCAAGTTGGCTTGTCGATCTCGTCGGGTGGAACCAGGC
TAGCGAATGCGGCACTGTATCCAGTCTCCAACGTCCACTGTCAGCAACGG
GCGGTCACGCAAGCTTCTAGTCGTCGGGTGGATCAGAGAGGTGAATTTTT
TGCTTTCCATCTCCAGAGTCTGCTGACAGAACGGTTAGTCAAGTACGCTG
CCGAACTCGTCGGGTGGAATCGGGAGCGAGAGAATGCAGGGACGTGTCCA
GTCTTCAGGGTCCACTGCCAGCAACGGGCGGCCGAGCAAGCTTCCAGTCG
TCGGGTGGGATTGAGAGGCCAAGGAACATTCTGGAATCTTCCATCGTTAG
TATCAGGGATCGTGTGCAAGCTGAAGACTCCCAGAACAATATACTCCTCA
CCAGACTCTACTGTTGTATGCACCATCTACAGACTGTTCCCTTTATAATC
ATATGCTGGCGCAGGGACATTTGACTCTTTACAGTGAGATTTACCCCTGA
GTTTAATCTGTGTTTAACTTTTACTCGTCTGATGTAACATTGCTTTGTAA
AGTTCAGTTTTGCCATGCCACGTGGCCAGAAATCATGCCCAGACTTGCTC
CTTTGTCTGGTTGTTGTTGTAATGTGAGTCTCAGTGACCCACATCTGGTA
TTCATTTCCTGTTTCACTCACCATGGGCTGCTTATCACAAATAACAGAGT
ACCAAAGAAAACACTTCTAAGTTTAGATACTACATCAATATTGTCCTCAT
AACATGCAAGATGTTGCTCGATACATTCCTTTGTTTGATTGTAAGACTCT
TCAAGTTCATACTATGGTAGCCGATTGTGTTTCAGAGTGCCCAACATTCA
ATCTGGATCTCTTTGTTAGCCAGGGTTTGTTGTCTGAAGTATTGATCGCT
ACACAATAGTTTTTGCCATGTCTCTTACATCAAACTCCGTCCTAATATTT
TACATGTTGCTCGATACAAATCCTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCTACACAATAG
TTTTTGCCATGTCTCTTACATCAAAATCTGTCCTAATATTTTACATGTTG
CTCGATACAATTCCTTTGTTTGATTGTAAGTAAGACTTTTCAAGTTCATA
CTATGTTAGCCGATTGTGCTTTAGTGTGCCCAACATTCAATCTGGATCTC
TTCGTTAGCCAGGGTTTGTTGTCTGAAGTAACTCAAATCGCTACACAACA
GTTTTTGCCACGTCTTATTTTACAACATATTCTGAACAAAGGTACATACA
CTGTCTTGTTTTCTGCAGTTTGATATAATTCGTGTGTAACGATATACTTG
ATATGTAGATTGTAACTAGTTAACTTAGTGGCTTCATTTGTTTATCATTC
TTCGAATTGACCTTGTCAATCCTCTTGTGTAAAGGGGAGGCATGTAATGA
ACCCACTAAGACACATGTAAGACCATTATTTAGTAATTGTAACCCCCCCT
TCATGAAAGTGTAATAGTCCAAGGCTGCCTCGTTCTGAGAAAGACCCAGG
CTGTCATTCTATGTGTTGGAATCCTGGGGGTCAGGAATAAACCATGTAGC
TCCACAATCTCTGTCTTGGCTCCCTGTATCTGTGTCCAATGACCTCAACA
TCGGTCCATAACAGTCATGCCTATCCATTCTCTGATATCATCCTCCTAGT
CTGATTCAAATTGCTCTTATACCTGTAATTTATTGAAGAATATAAAGAGG
TCACTTTCCTTGTTAAGAGAACATGTCTACATTTCCTTCCAGGGAGAAAT
GTAACCGCCTGAAACGGCCCGGCAACGACAACGACAGTCCCGACGACGGA
GACAAGACTGTCGAGGCCTCCCTGGCGGCTACACATGCGGACCTAAGCCA
GAATCAAAACATGATTGTTCTCAAAGAGATCCTCGCAGATCCCATCAAAG
TGAAACAAATCGCAGACGAACTGGAGATTCCAACCAAGGTCACCAGATGT
CATGGAAACCAAAGCCACAAGATGGCGTTAGTCGCGGAGGTTGGCTACCC
CGGACTTTGCGATATTGAGCTCGAACAAGACTTTCTACGAAAAAAAGAAC
CTCTAAGCCGAGTCAGTGAAGTAGACATAAAAGTCACCTAGAGTCAGAAA
ACTTTCGAAGAGGTCGAAATGGGCAGCTACAAAGGATATACTGGCCATAT
TTCATAATTAAAAAGGTATTATTTTTGTATATAGATACGACCACTAATTT
GGAGAAATTCTCAAGCAATATATTCTCAATTCTCGACCGAAAATGGGTTA
ATCTATTCGAAAAAGTTGTTAAAAGTACTCTAGACATATGTCAAGGCGTG
GCTTTGAAGTCTACATGTATTTTTGTAACCTAACCTAACCTAGCTTAGGA
GATGGCGAAGTATCTTAGAATCATCTTAGAGATGCAGAGAGTATAGACAT
GTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGCCATGTAGCG
AAACGACTTATGCCATGTATTCAAATTCAAATGACAATTGCGGAAGACCG
TCACAAACACCAAGTGACTACATATTGACCTAATAGGCAATAAACAAAGG
CGCCTCAAACAAAACAAAACAAAGCAAAACTCTGCATTTAAAAACATTTG
ACATCATGACGGTTTATGACTCCATACTCTGCTACCTCGTAGGCTAGGTG
TCAGAGAGACGCCAGAAGAGAAAATTACGGACGACCGCTGGTTGGTCGGC
TGCCACTATTTTGATGACGTAGGATGACGTAGATTGTACCCGAGTACTTT
AAAGACTGATACTTTTTGACCATGTATGTATGTATGTATGTATGTATGTA
TGTATGTACCTTATGACATTTTTGACGCAGGTCACTCCTCAACCAAAGTA
TATTGCACCTTACAGTTGAAAAGGGAATAGAGTATTATTTCTTCGTATTC
GTTGACATTTTAGGAAAATGAAAGAAAATTTTGTAATATTTTTGTGGATG
CAACGTTTGGTTGTCTAGTTTATGTTGTACTATATTAAAGCATTTGTATA
ACTTTGGTAATTTATCTATCATTAGGAGAGGAGGATCAGAGAAGATTCGA
TGTTTTCTAAATATTGTCTATTATTAATATGTGATATTGTGTTATTGAAA
ATGATCAAAC Coding sequence (CDS) from alignment at Sc0000017:3165768..3174627+ >BlTCONS00036045 ID=BlTCONS00036045|Name=BlTCONS00036045|organism=Branchiostoma lanceolatum|type=CDS|length=861bp|location=Sequence derived from alignment at Sc0000017:3165768..3174627+ (Branchiostoma lanceolatum)
ATTACTGTCTTCTCAGCGGTGTTCGCGGTTCTACCCCTTCTGGACGTCGT
TTCCGTGGTCCCGATCTTTGACGTTGTCTGTTCCTTCGACTGGGCTGACT
CCAGTGCTTCTGGCCGCTTCTACATCTATTGGGTTATTGTGCAGGGTTGT
GTGTTGATCGCTATTTTGTTGGCGATGAACGTTTTCGTCATCATCGAGGT
TCGGCGCATGAACAGTCGGGTGGAGCGGGTGCCCCTGTCCGAGAAGGAGG
GGGAGACAAGGCGGGGGCGGCGGGGGCAGGAAAAGTACTCCGAGTTCACC
ATACTCGTCATCATGGTGTCCGTTGTGTTCATCGTCTGCACAGCGCCGAT
CTTGGTAAGGGTAAGGACACTGTTTAACCAGCTGGACATCCTGCCGTCCA
AGAGCGCTGACTACGCGGCGAAGCGACTCAGTATCATCGGCAGCATGATC
AACCCACACCTGTACTGGACATTCCGTCCCAAGGCCAGAAAGGCCATCAT
CAAGTTCGTCAGGGAGAAATGTAACCGCCTGAAACGGCCCGGCAACGACA
ACGACAGTCCCGACGACGGAGACAAGACTGTCGAGGCCTCCCTGGCGGCT
ACACATGCGGACCTAAGCCAGAATCAAAACATGATTGTTCTCAAAGAGAT
CCTCGCAGATCCCATCAAAGTGAAACAAATCGCAGACGAACTGGAGATTC
CAACCAAGGTCACCAGATGTCATGGAAACCAAAGCCACAAGATGGCGTTA
GTCGCGGAGGTTGGCTACCCCGGACTTTGCGATATTGAGCTCGAACAAGA
CTTTCTACGAAAAAAAGAACCTCTAAGCCGAGTCAGTGAAGTAGACATAA
AAGTCACCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00036045-exon-Sc0000017-1564993656:3165768..3165784 | BlTCONS00036045-exon-Sc0000017-1564993656:3165768..3165784 | Branchiostoma lanceolatum | exon |
| BlTCONS00036045-exon-Sc0000017-1564993656:3167366..3167495 | BlTCONS00036045-exon-Sc0000017-1564993656:3167366..3167495 | Branchiostoma lanceolatum | exon |
| BlTCONS00036045-exon-Sc0000017-1564993656:3167762..3167976 | BlTCONS00036045-exon-Sc0000017-1564993656:3167762..3167976 | Branchiostoma lanceolatum | exon |
| BlTCONS00036045-exon-Sc0000017-1564993656:3170357..3170508 | BlTCONS00036045-exon-Sc0000017-1564993656:3170357..3170508 | Branchiostoma lanceolatum | exon |
| BlTCONS00036045-exon-Sc0000017-1564993656:3173260..3174627 | BlTCONS00036045-exon-Sc0000017-1564993656:3173260..3174627 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:3165768..3174627 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF017648 |
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