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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000017:3165767..3174627+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00036044 ID=BlTCONS00036044|Name=BlTCONS00036044|organism=Branchiostoma lanceolatum|type=mRNA|length=8861bp|location=Sequence derived from alignment at Sc0000017:3165767..3174627+ (Branchiostoma lanceolatum)
GCCATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCT
TTCAAACTTAGGAACCGTAGTGTAAATAACAATGTAGTGCAGTCGTGGTG
ATTGTCACAGACCGCTTCACCGCACTGATGCTGCCATTTCGCTACACGAC
CTGGGCCAGGCCGGGCAGAGCTGTCTGTGGTTTAGTCGCCATTACTGTCT
TCTCAGTAAGTGCTTGACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGA
ACCGTAGTGTAAATAACAATGTAGTGCAGTCGTGGTGATTGTCACAGACC
GCTTCACCGCACTGATGCTGCCATTTCGCTACACGACCTGGGCCAGGCCG
GGCAGAGCTGTCTGTGGTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGC
TTGACTGTATTCGCAGTAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAA
TAACAATGTAGTGCAGTCGTGGTGATTGTCACAGACCGCTTCACCGCACT
GATGCTGCCATTTCGCTACACGACCTGGGCCAGGCCGGGCAGAGCTGTCT
GTGGTTTAGTCGCCATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCG
CAGTAAGTTCTTTCAAACTTAGGAACCGTAGTGTAAATAACAATGTAGTG
CAGTCGTGGTGATTGTCACAGACCGCTTCACCGCCCTGATGCTGCCATTT
CGCTACGTGACCTGGGCCAGGCCGGGCAGAGCTGTCTGTGGTTTAATCGC
TATTACTGTCTTCTCAGTAAGTGCTTTGAAAATCAGCAAAGTAGTGTAAA
CAACAATGCAGTGCAGTGGTAGTGATTGGGGCACATCGCTTCACCGCCCT
GATGCTGCGTAAATAACAATGTAGTGCCTAGGGTCACATAGGGCAGCAAG
TTTCCTTGCTGTTACAGTAGTGGGGTATGTTTTTACAAGGAGAGTTTGCT
AGCCCGCCCCCTTCAAAGTGCTCGAGGCACCTCCTTTAACACGGGACCCA
TTTTATGTTCCTTCCGAAAGACGGGAGCAGCCCCAACTGAGATGTCCCCA
ACCCAGGATTGAACCATGGTCTCCTAGTTACCAACTAATTGGAACCAGGA
GCTCAACTGTGATGCTGCTACTAGTTGAGCTACATGGACATCCCTAAACA
CCAACATATACCTGGTTAATGACATGGATGCAACATTTGGCAGTAGCATA
TATCTACTTTCAAATCCTGTTTTTGTGCAGCGTTCAGATGAATTTGCCCA
AGCAAATATCTCCTGTCTCCACCATATTCTAAAAGTTGCACATTTAAAGG
TTCAGAAGTTCTAAAATGCAACTACCGAAATGTGGTTCTTATCATTCCAT
GCATGATTCCTAAATTCCTAGACATGTCTAAGCCAAATTGATGATTCTAA
AATTATACCGCAAAGGCCCAAAATGTTCATTAGAATTAAGTGACATCAAA
AAGGGAGAATGAACGAATTTCAGATATTATACCGGCGTGTCTTCATCTGT
AGAATCTATTGTTTCCAATTAAGTCTATTACTGTTTTACATTAGAGATAA
CCTGCAGAAAACTTGCTTTCGTCCTCATTTTTTGTCGTGTGTTTCACAGG
CGGTGTTCGCGGTTCTACCCCTTCTGGACGTCGTTTCCGTGGTCCCGATC
TTTGACGTTGTCTGTTCCTTCGACTGGGCTGACTCCAGTGCTTCTGGCCG
CTTCTACATCTATTGGGTTATTGTGCAGGGTACGTATAGTTAGATCCCAA
TTGGAAAAATACCTTTCGGGTGTGACCCCTACGTGGCCCCGTGGGACACA
CTGCGGCTGCCGGGCTATATTTTGGTCCGGCCGGGACCCTGAATCATTTT
AACTCGGACTTAATCAACGCGGGGCCCGGTAACAAATATACACAGTGAGC
TAATCGTGCGAACACCAGGATATCATGATGAAAGCACCATTGATGCATTA
ATGAGTGTGGCCCTACAGAATACATGCTCTCCTTCTTACTTCTAGGTTGT
GTGTTGATCGCTATTTTGTTGGCGATGAACGTTTTCGTCATCATCGAGGT
TCGGCGCATGAACAGTCGGGTGGAGCGGGTGCCCCTGTCCGAGAAGGAGG
GGGAGACAAGGCGGGGGCGGCGGGGGCAGGAAAAGTACTCCGAGTTCACC
ATACTCGTCATCATGGTGTCCGTTGTGTTCATCGTCTGCACAGCGCCGAT
CTTGGTAAGGGCCAGGTCTTACATTTGTCGTGCGACACCGTTGCGGAGGC
CGTTCTTTTTTAAATTTTTTTTTTCATTCAACCAACAAAACTAAGACATA
AAAACCATGCAGCAGAAACCTTACCATAAAATAAGTAATCAGTTGTGCAT
AATATAAATGAGGGTCAGCAAATCAACAGAAACGTATTGTTTAATCAAAT
ACATAATGTGCCCCCTTTACCCCGTATCTCTCCAGTTTTCTTTTTCTAAC
CGCAATATGATATTCGACTTTATCAAAGAAATAAACATATCGAAGAAAAG
CTTCAAAAGTCAAGTTGTTGAACTTTCTAAAAGGGTATATGAAAATTTAT
GGCTAAAACAATAATGAGATCACAGGGAGTAGATTTCCGGAAATAACAAC
AAAACCACTTAAACGAATATTTTGACCTGTTTTTTTGAAGTGCGAGGTTT
TGATTTTATCCCCAAACGTCTCCGATAGACTATATGCAATAGTCTGTTTG
TAGGTAAAAGTTCATATTGAAAGCACATGGTTGGTGGGTCAATAGCACAG
TAAATTAAGGAGGTATATATTTGTTTCCAAGGTATATAGATAAGAGTGTA
ATGTAGTGTAGTGTAGTGTTGTATAGTGTAGTGTAGTGTAGTGTAGTATA
GTGTAGTATAGTATAGTGTAGTGTAGTGTTGTGTAGTGTTGTGTAGTGTA
GTGTAGTGTAGTGTAGTATACTATTGTATAGTGTAGTGTGGTGTACTGTA
TTGTAGTGAAGTGTAGAAAACGTATGAATAGTCTTCTTTTGAGATTACAA
AGATGAAAATTCTCATACAAGGATGACAAATGACTACTAAAGAAGACAGT
TAGAAATTCAATGTAAATATTCAATGTAAAAGCATGTTGTCTAAAGTGCT
CACTTGTCAAAATTGTCATATTTGGGATAGGATTGGCCTGTTATAAACTA
TAGTTTGTGGGAAACCATTGCTACAATGCTATCATCGGTCACTGACAAAG
GCAACACATAGCCCCATGTCTCGGTCTCCCACGGTACCCCCCCCCCCAAA
CAGCTTCTGCATGGAGGCTATAGTTGGTAACAACACAATTAAATATTATT
TCATCCAAGAAGTAAGTCCATACAATTTAGAATGCAGACAGTTTCCATTG
ATTTTTTTGGGTTCTATACAAAACTGATTTTATCAAAATAACCTCGTTGC
CTTTATCAAACACCCACTACTGCTTTCCACAATCAATGGGCATCGTTGTG
TACATGGAGATGAATACAACCCCTATGGGTTTTTAATCAAAGTTGGTTTA
CTTCAAAAGCTGGTCCGCTAAAAATAACTCCCTTGTAGCTATATAGGCAA
TCTAAATGTATCTAGTAATCCAATTACACATCACAATCTGTTATATAAAA
TGTTTTTACCATCTGCCGTTCCTTGCAAGTAGACTACATGTATATACGGT
TTGATTGAAGTATGAACGTTTAGATTTTCGTACAGCAAGAAAAAAATCTA
TATCACCAAAACAAATTTTCTATCGAAACGTTGGACTTCCTCAAGTTGTA
CTGCCCCACTTTGCGTTGACACGTGACCAGAAAATGTGACGTCAGCAATG
AATTTAGGTGATCTGAAGTTCTCTCTATACTAGCTATATCATCATGTGTT
TTTGTTGTTGTTGTTTTTGTTTTGCATGACTGGTAAACCGCCTTTAGTAA
CGCACCAGTTTTGTGCAATAGGTACAAGCTGGCCCAGATTTAGCGTTCCA
GGGAGTTGCACTTATTGTAGGTCGGCAGGAAGAACTGCCTGAGCTGCCGA
ACAAATTCTCTGGCGGGTCCTGCTAGAGTCTGGTCCCCAGGGTAGGGTCC
TCGGAAGGACCCTTACTCTATTTTATAGTTCGGTGGGATTTTTAACGTGC
TCAAGGTGTGGCTCTCCTCAAACACAGGGCCTCCGGACCGTTACGTCCTA
TCCGAGAGAACGTTGCTTGGACTCTTGAAAAACGGCCAAGGCCAAAGAGA
ATGTAATCTTTCAGGCTAAATAAAGGTTGGAAAAGACCGAAGCTAGGTGC
TCATTTTGACCTGAGTCAAGTGAGGAAATAGGTGTCAACTGGTTGGTGAT
CCTGATTGGCAATATGCTGCCTCTTATCCAATTTTAATGAAATATGAAAT
ATGAAATATGAAATATGAAATATGAAATATGAAATATGAAATATGAAATA
TGAAATATGAAATATGAAATATGAAGTATGAAGTATGAAGTATGAAGTAT
GAAGTATGAAGTATGAAGTATGAAGTATGAAACATGAAACATGAATCATG
AAACATGAAACATGAAACATGAAACATGAAACATGAAACATGAAATATGA
AATATGAAATTTGAAACATGAGATATGATTCTTTTCCCAGGTAAGGACAC
TGTTTAACCAGCTGGACATCCTGCCGTCCAAGAGCGCTGACTACGCGGCG
AAGCGACTCAGTATCATCGGCAGCATGATCAACCCACACCTGTACTGGAC
ATTCCGTCCCAAGGCCAGAAAGGCCATCATCAAGTTCGTCAGGTAACAAA
ACCTGCCATGTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGC
CATGTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGCCATGTA
GCGAAACGACTTATGCCATGTAGCCAAACGACTTCTGCCATGTGACGACA
CGACGTATGCAATGTAGCGAAACGACTTATGCCATGTAGCGAAACGACTT
ATGCCATGAGCGAAACCACTTATGCCATGTATACGTAGCGAAACGACTTA
TGCCATATAACAAAACGACTTATGCCATGTAGCAAAACGACTTATGCCAT
GAAGCGAAACGACTTATGCCATGAAGGGAAACGACTTATTCTATGTAGCG
AAACGACTGTAGCGTACTGACTATGTAGCAAAACGACCGGTCACATTTAG
ATGCATGGATTTTCAGTAATTTGGGGAAAATCAGCGATTTTGGCGTGCTC
TTTTACTTATCTCCCTAATATATGAGTTATTCTAAATGTTTGACGTTAGG
GCATCACAGACGGTGTGGCAACCAGTTGTCTCCGCCCTTCTCGGTTTTCT
GTTTCTCTTGATGTTTCACTTAATGTCATTGTAATGAACCCACTAAGACA
TATGTAAGACCATTATTTAGTAATTGTAACCCCCCCTTCATGAAAGTGTA
ATAGTCCAAGGCTGCCTCGTTCTGAGAAAGACCCAGGCTGTCATTCTATG
TGTTGGAATCCTGGGGGTCAGGAATAAACCATGTAGCTCCACAATCTCTG
TCTTGGCTCCCTGTATCTGTGTCCAATGACCTCAACATCGGTCCATAACA
TATGGCGTCACGGACAGGATTCACAGTATACTATGGGTTGCCAACATGTC
GTACAACGTGGAGGAGGGTATGAATTGTATCCAGTCTCCAAACTCCACTG
ACAGCACGGATGGTCAAGTTGGCTTGTCGATCTCGTCGGGTGGAACCAGG
CTAGCGAATGCGGCACTGTATCCAGTCTCCAACGTCCACTGTCAGCAACG
GGCGGTCACGCAAGCTTCTAGTCGTCGGGTGGATCAGAGAGGTGAATTTT
TTGCTTTCCATCTCCAGAGTCTGCTGACAGAACGGTTAGTCAAGTACGCT
GCCGAACTCGTCGGGTGGAATCGGGAGCGAGAGAATGCAGGGACGTGTCC
AGTCTTCAGGGTCCACTGCCAGCAACGGGCGGCCGAGCAAGCTTCCAGTC
GTCGGGTGGGATTGAGAGGCCAAGGAACATTCTGGAATCTTCCATCGTTA
GTATCAGGGATCGTGTGCAAGCTGAAGACTCCCAGAACAATATACTCCTC
ACCAGACTCTACTGTTGTATGCACCATCTACAGACTGTTCCCTTTATAAT
CATATGCTGGCGCAGGGACATTTGACTCTTTACAGTGAGATTTACCCCTG
AGTTTAATCTGTGTTTAACTTTTACTCGTCTGATGTAACATTGCTTTGTA
AAGTTCAGTTTTGCCATGCCACGTGGCCAGAAATCATGCCCAGACTTGCT
CCTTTGTCTGGTTGTTGTTGTAATGTGAGTCTCAGTGACCCACATCTGGT
ATTCATTTCCTGTTTCACTCACCATGGGCTGCTTATCACAAATAACAGAG
TACCAAAGAAAACACTTCTAAGTTTAGATACTACATCAATATTGTCCTCA
TAACATGCAAGATGTTGCTCGATACATTCCTTTGTTTGATTGTAAGACTC
TTCAAGTTCATACTATGGTAGCCGATTGTGTTTCAGAGTGCCCAACATTC
AATCTGGATCTCTTTGTTAGCCAGGGTTTGTTGTCTGAAGTATTGATCGC
TACACAATAGTTTTTGCCATGTCTCTTACATCAAACTCCGTCCTAATATT
TTACATGTTGCTCGATACAAATCCTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCTACACAATA
GTTTTTGCCATGTCTCTTACATCAAAATCTGTCCTAATATTTTACATGTT
GCTCGATACAATTCCTTTGTTTGATTGTAAGTAAGACTTTTCAAGTTCAT
ACTATGTTAGCCGATTGTGCTTTAGTGTGCCCAACATTCAATCTGGATCT
CTTCGTTAGCCAGGGTTTGTTGTCTGAAGTAACTCAAATCGCTACACAAC
AGTTTTTGCCACGTCTTATTTTACAACATATTCTGAACAAAGGTACATAC
ACTGTCTTGTTTTCTGCAGTTTGATATAATTCGTGTGTAACGATATACTT
GATATGTAGATTGTAACTAGTTAACTTAGTGGCTTCATTTGTTTATCATT
CTTCGAATTGACCTTGTCAATCCTCTTGTGTAAAGGGGAGGCATGTAATG
AACCCACTAAGACACATGTAAGACCATTATTTAGTAATTGTAACCCCCCC
TTCATGAAAGTGTAATAGTCCAAGGCTGCCTCGTTCTGAGAAAGACCCAG
GCTGTCATTCTATGTGTTGGAATCCTGGGGGTCAGGAATAAACCATGTAG
CTCCACAATCTCTGTCTTGGCTCCCTGTATCTGTGTCCAATGACCTCAAC
ATCGGTCCATAACAGTCATGCCTATCCATTCTCTGATATCATCCTCCTAG
TCTGATTCAAATTGCTCTTATACCTGTAATTTATTGAAGAATATAAAGAG
GTCACTTTCCTTGTTAAGAGAACATGTCTACATTTCCTTCCAGGGAGAAA
TGTAACCGCCTGAAACGGCCCGGCAACGACAACGACAGTCCCGACGACGG
AGACAAGACTGTCGAGGCCTCCCTGGCGGCTACACATGCGGACCTAAGCC
AGAATCAAAACATGATTGTTCTCAAAGAGATCCTCGCAGATCCCATCAAA
GTGAAACAAATCGCAGACGAACTGGAGATTCCAACCAAGGTCACCAGATG
TCATGGAAACCAAAGCCACAAGATGGCGTTAGTCGCGGAGGTTGGCTACC
CCGGACTTTGCGATATTGAGCTCGAACAAGACTTTCTACGAAAAAAAGAA
CCTCTAAGCCGAGTCAGTGAAGTAGACATAAAAGTCACCTAGAGTCAGAA
AACTTTCGAAGAGGTCGAAATGGGCAGCTACAAAGGATATACTGGCCATA
TTTCATAATTAAAAAGGTATTATTTTTGTATATAGATACGACCACTAATT
TGGAGAAATTCTCAAGCAATATATTCTCAATTCTCGACCGAAAATGGGTT
AATCTATTCGAAAAAGTTGTTAAAAGTACTCTAGACATATGTCAAGGCGT
GGCTTTGAAGTCTACATGTATTTTTGTAACCTAACCTAACCTAGCTTAGG
AGATGGCGAAGTATCTTAGAATCATCTTAGAGATGCAGAGAGTATAGACA
TGTAGCGAAACGACGTATGCCATGTAGCGAAACGACTTATGCCATGTAGC
GAAACGACTTATGCCATGTATTCAAATTCAAATGACAATTGCGGAAGACC
GTCACAAACACCAAGTGACTACATATTGACCTAATAGGCAATAAACAAAG
GCGCCTCAAACAAAACAAAACAAAGCAAAACTCTGCATTTAAAAACATTT
GACATCATGACGGTTTATGACTCCATACTCTGCTACCTCGTAGGCTAGGT
GTCAGAGAGACGCCAGAAGAGAAAATTACGGACGACCGCTGGTTGGTCGG
CTGCCACTATTTTGATGACGTAGGATGACGTAGATTGTACCCGAGTACTT
TAAAGACTGATACTTTTTGACCATGTATGTATGTATGTATGTATGTATGT
ATGTATGTACCTTATGACATTTTTGACGCAGGTCACTCCTCAACCAAAGT
ATATTGCACCTTACAGTTGAAAAGGGAATAGAGTATTATTTCTTCGTATT
CGTTGACATTTTAGGAAAATGAAAGAAAATTTTGTAATATTTTTGTGGAT
GCAACGTTTGGTTGTCTAGTTTATGTTGTACTATATTAAAGCATTTGTAT
AACTTTGGTAATTTATCTATCATTAGGAGAGGAGGATCAGAGAAGATTCG
ATGTTTTCTAAATATTGTCTATTATTAATATGTGATATTGTGTTATTGAA
AATGATCAAAC Coding sequence (CDS) from alignment at Sc0000017:3165767..3174627+ >BlTCONS00036044 ID=BlTCONS00036044|Name=BlTCONS00036044|organism=Branchiostoma lanceolatum|type=CDS|length=879bp|location=Sequence derived from alignment at Sc0000017:3165767..3174627+ (Branchiostoma lanceolatum)
CATTACTGTCTTCTCAGTAAGTGCTTGACTGTATTCGCAGCGGTGTTCGC
GGTTCTACCCCTTCTGGACGTCGTTTCCGTGGTCCCGATCTTTGACGTTG
TCTGTTCCTTCGACTGGGCTGACTCCAGTGCTTCTGGCCGCTTCTACATC
TATTGGGTTATTGTGCAGGGTTGTGTGTTGATCGCTATTTTGTTGGCGAT
GAACGTTTTCGTCATCATCGAGGTTCGGCGCATGAACAGTCGGGTGGAGC
GGGTGCCCCTGTCCGAGAAGGAGGGGGAGACAAGGCGGGGGCGGCGGGGG
CAGGAAAAGTACTCCGAGTTCACCATACTCGTCATCATGGTGTCCGTTGT
GTTCATCGTCTGCACAGCGCCGATCTTGGTAAGGACACTGTTTAACCAGC
TGGACATCCTGCCGTCCAAGAGCGCTGACTACGCGGCGAAGCGACTCAGT
ATCATCGGCAGCATGATCAACCCACACCTGTACTGGACATTCCGTCCCAA
GGCCAGAAAGGCCATCATCAAGTTCGTCAGGGAGAAATGTAACCGCCTGA
AACGGCCCGGCAACGACAACGACAGTCCCGACGACGGAGACAAGACTGTC
GAGGCCTCCCTGGCGGCTACACATGCGGACCTAAGCCAGAATCAAAACAT
GATTGTTCTCAAAGAGATCCTCGCAGATCCCATCAAAGTGAAACAAATCG
CAGACGAACTGGAGATTCCAACCAAGGTCACCAGATGTCATGGAAACCAA
AGCCACAAGATGGCGTTAGTCGCGGAGGTTGGCTACCCCGGACTTTGCGA
TATTGAGCTCGAACAAGACTTTCTACGAAAAAAAGAACCTCTAAGCCGAG
TCAGTGAAGTAGACATAAAAGTCACCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00036044-exon-Sc0000017-1564993656:3165767..3165807 | BlTCONS00036044-exon-Sc0000017-1564993656:3165767..3165807 | Branchiostoma lanceolatum | exon |
| BlTCONS00036044-exon-Sc0000017-1564993656:3167366..3167495 | BlTCONS00036044-exon-Sc0000017-1564993656:3167366..3167495 | Branchiostoma lanceolatum | exon |
| BlTCONS00036044-exon-Sc0000017-1564993656:3167762..3167970 | BlTCONS00036044-exon-Sc0000017-1564993656:3167762..3167970 | Branchiostoma lanceolatum | exon |
| BlTCONS00036044-exon-Sc0000017-1564993656:3170357..3170508 | BlTCONS00036044-exon-Sc0000017-1564993656:3170357..3170508 | Branchiostoma lanceolatum | exon |
| BlTCONS00036044-exon-Sc0000017-1564993656:3173260..3174627 | BlTCONS00036044-exon-Sc0000017-1564993656:3173260..3174627 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000017 | genome | Sc0000017:3165767..3174627 + |
Properties
| Property Name | Value |
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| GeneID | BlCUFF017648 |
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