BlTCONS00016308 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00016308
Unique NameBlTCONS00016308
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000006:32903..42694+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00016308 ID=BlTCONS00016308|Name=BlTCONS00016308|organism=Branchiostoma lanceolatum|type=mRNA|length=9792bp|location=Sequence derived from alignment at Sc0000006:32903..42694+ (Branchiostoma lanceolatum)
CGGAAGTGTATTCTTCGCGTACTGCACTGTCATCATTGTGTTCATACCCG GTGCACTCGTGCCGGAACGCTAGCCGTCTAGATCTTCAGACAGAGCTCCA GCCTTCAGGTAACCTTTGTATGTCTTTCTACACATGACATGTAGCCTTTG ATAGAATGTCGCTTGTGTTTAGGGTTTTATAAGTTCAAGGACCACGGGCA CGCAAGTGGGAGGGCACATACCAAATTTCTTATCAATCCATCAAGAGTTT TTGTTTTATGATTTTAAACCCCAAAGCAAAGCCACAAACGGTACCGAAAA CAATTAAACAAAAAGCTCACCAGGTGGTACAAAATGTGGAATACTTGTTA GGCCAACGTCGACTCCATCCCTGCGTTTCTCATACTGATCGGCAGAGGTC TCTTCTGAGTGGCTTGTCGTTTCAAGTGAATACTTCCCATCTTTGGCGCT AGCATCCTCGCCTGTCGTCTTTGCCTAGTGAACGCCACGAAAGAACAATG TCGTAATGTTAGAAATATTATCTCAGAGTTAGAATATGTTGTAGTTTTGG TCATGACCAAATTCTAAACACGGGTTTTGGAAGTTAAAGAATTATTAATG TGTTCATGATGACTTCTACCTACACAGATTAACATAATATTCCATGCTAG GAGTTTTTTCGGTNGATAATAATGTGTTCATGATGACTTCTACCTACACA GATTAATTTAATATTCCATGCTAGGAGTTTTTTCGGTCTATTGCAGTAAG TTAGCGCCGATTGAATAGAATATAACAATACAATTATTCATATCGTGATG ATTGAATGGCCTTTGAATTTTGAAGTGTTATGAACGACTTTCATTCGTGG ACAATATTACGTTACTGCGACCTTTGCTGGAGTCGCCCGTCTCACTTTGA CATGAAGGTATCGTCAAGAGCCAACACGAACATTATTACTGAGAGTACAA ATTTTTTTTCTTGTTGACGGCGTGCACCACCACCAACGGCCACACTTGGG TAAGGCCTCTGACCATAAGTCCTAGACACTATGCCCCACGCGGGGTTTTG TCTAGTATCACGACAAGACAAGACAAGACAATCCATCCAGGTATTCTTGA GTTATCGTGTTCACACACACACACACACACACACACACACACACACACGC ACACACACACACACACACACACACACACACACACACACACATACACACAT TCACGGACGCTGACGAAAATAACCTTCAAGGCGAAGGTAAAAACAGCTCA AAACGATACATGTCAGCTCATAAAGTACTCGTCCGAAATTCGAAGACAGT TTTACCCCCTTTTGTTTACTCTCTAAAATCGGAAATGGTGCGCCGATAGA TCCCACGGCCATTTCATGAAACAGCCCTACCTGTGTGATCTCTGCGTGTG TCGATGATGCACTCACAATACACGAGACGATCAACAAACAGACAACGGAC GGTTTCATCTTCAACGCGTTGTCTTCTCTACATATTTCCAGCTACGCTTG AAGCAGTGTTTACTCAAAGAACGTGTTGCCATTGACGACGCATTCTAGAG AACGCTGTCGGGCGTTCTGATGGTAACGGACAGACCTTGGACGGACGCCT TCAAAGGCCGTCTTCTAGAACATGGGTTGAGTAGAATAGAGTCCAAGATG AGCCATGAAAGGCTTTTAAAACACGTATATCGGGAAGTCTCTCTGTAGAC CCAGCGATTTAAACTTATATCTTTTATCGAGGATCTTTGTAAGGTCAAAA ATAGAGCACTTTTTGAAAGTATCGCTCAACTGTCGAATAATCAACAGAAG TTTAGAACGCGGGGTTCTGTGGCCGTGGGGTCATGGCACATTTACACACA CACACACACACACACACACACACACACACACACACACACACACACACACA CACACTCCTTCCGATTGGACGGTCTAGACGAAACTTTACTCACATCGTAT AGTTTGAAGATGTTTTTGATATCCGCAAACGTTTACTGTTGTTTGGCCTT TCTTTTACACGTGAACACTTATGTGAACAATAAACTAATGTGCAAAGCTG GTAGTGTCTTCTTGCGAGTAATAGGTCTTTTTAACAGTTACAGGCCCACT ATCTGAATTTAGAACGTTTGGTCCTTTCGCTGTCCAGTCGCCGATGCCAT TTCAAAGTTGCCTTTTTTTGTCCATGATGAAGAGTAGAAAAGTCATTTCT GAAGGATCCGGGTTTTTAGCGAATACCCAAAACGCCCACTCTGGCGAATT CCGCGCGGCGCGAACCTCATTTTTTGTTCGGAATATGTTCAGGTTGTGTT GTGTTCCTATCTATTTCAAGTCAATCCATCAAAACAAAGTTAAATAAAGC GAACTTGGCGATTCTTACCTGGCTTTTTAGCGAATACCAAGNCGAAAATA ACCTTCAAGGCGAAAGTAACAACAGCTCAAAACGATACATGTCAGCTCAT AAACTACTCGTCCGAAATTCGAAGACCATTTTACCCCCTTTGTTTACTCT CTAAAATCTGAAATGGTGCGCCGATAGATCCCACGGCCATTTCATGAAAC AGCCCTACCTGTGTGATCTCTGCGTGTGTCGATGATGCACTCAGAATACA CGAGACGATCAACAAACAGACAACGGACGGTTTCATCTTCAACGCGTTGT CTTCTCTACATATTTCCAGCTACGCTTGAAGCAGTGTTTACTCAAAGAAC GTGTTGCCATTGACGACGCATTCTAGAGAACGCTGTCGGGCGTTCTGATG GTAACGGACAGACCTTGGACGGACGCCTTCAAAGGCTGTCTTCTAGAACA TGGGTTGAGTAGAATAGAGTCCAAGATGAGCCATGAAAGGCTTTTAAAAC CCGTTTATCGGGAAGTCTCTCTGTAGACCCAGCGATTTAAACTTATATCT TTTATCGAGGATCTTTGTAAGGTCAAAAATAGAGCACTTTTTGAAAGTAT CGCTCAACTGTCGAATAATCAACAGAAGTTTAGAACGCGGGGTTCTGTGG CCGTGGGGTCATGGCACATTTACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACTCCTTCCGATTGGACGG TCTAGACGAAACTTTACTCACATCGTATAGTTTGAAGATGTTTTTGATAT CCGCAAACGTTTACTGTTGTTTGGCCTTTCTTTTACACGTGAACACTTAT GTGAACAATAAACTAATGTGCAAAGCTGGTAGTGTCTTCTTGCGAGTAAT AGGTCTTTTTAACAGTTACAGGCCCACTATCTGAATTTAGAACGTTTGGT CCTTTCGCTGTCCAGTCGCCGATGCCATTTCAAAGTTGCCTTTTTTTGTC CATGATGAAGAGTAGAAAAGTCATTTCTGAAGGATCCGGGTTTTTAGCGA ATACCCAAAACGCCCACTCTGGCGAATTCCGCGCGGCGCGAACCTCATTT TTTGTTCGGAATATGTTCAGGTTGTGTTGTGTTCCTATCTATTTCAAGTC AATCCATCAAAACAAAGTTAAATAAAGCGAACTTGGCGATTCTTACCTGG CTTTTTAGCGAATACCAAGCTAAATGGCTTTTAGTGAATGCCCACTATCA GCCAAACTATCGGCCATCGTGCCACGGGCGCTAACTCTGATAAACATGCT AGCAACCGTAGTAATACATCGGAGTCTTTCAAACGTTTGGAAATTCACTA AGCTGAGGTCATGCACATGCATAAAACCTCAGAAAAGTGAATTTCTAAAC CATGAAAAATACCGGCATGGTTGAAGAGCACAGTTGTAAAGAAAACTGCA GTGTCACCACTGCTACGCATGGTGGTGTCAGCGTTACTGCACAGAGACAA ATCTGTTGATTCAATAGCTTACTTATGTCACTGAAAAGGTTAATATTTAC TAGAGGTACTGTGTACAGGGTTGCCAATAGCTTCTTTCGCAGACCTTCTA GGTGTGGTCAGCGTTCCTTTTTCTGGGGGGAGGGCTGATTTGTGATTTTC AACATGGGCCACGGCCTAAAAGATCCTCGAATGCCGGTTATGCTAAGGTC ACACTATCCAACACGGGGCCCGACCGGGCAGTTTGCGGGAACGAAAAGTA TGATTGAAAAGACAACAAAACACACAAAAAAGTTGCAAAGATTGATTATT AGCACCATTTGTGTATATTCTTCATATAAATTGTTTAATTTTCGTTCACG CAAACAGCCCGGCCAGGCCCCGGTTTGGAAATGTGACCCAACGTTAAGCA TTAGTTTGTAGTACGAAACTATGGTGATAATAAATAATCCACTTGCCACC CAGCTGACACTTTATCATACTTCCCACTGCAGTTATGTATTACTGTTCAT ATCTATTTCGTTTGTTTTTATCGTTTGTTTACTATTTATCTACGATCATT TTATCTATCTTTTATTTTACTGCTAACGTTATAATATTACTTCAATGAAC TTCATTGGTTCCCACGCACCAGTTAAGGTATTACTCCTCGATACTCTCGG CTAGATTTTGAATATTGGTTACAATCTGCGTTCATTATGTACTTTTAGCA CTCGGTGCTGCCGATGTGCCACCGCTTCAAAGGTGAATAAAGTTCAAAGT TGTGCGGCTAGTGCCTCACTCCAAGGCGAGCTCCCCAGGCCCATGTTGAA AATCGCACATCAGCGCTAGGGCGCCAATTCCCCCCCCCCCCCCCCCCNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNAAAAGGTTGGCCGCACCTAGAAGGTCGGCGAAGGAGGTAAGGTTACC AAGTTGTGCGACAGGCACGCCCCTTTTCCCGTCATGCAACGTTAACTATT CGGGTGGTATTTGAGGAAGTCGAGGACACAGGGCTTTACTTCTGGGCTAG TCCACCACCACAATCGTTTAGCGGTGAGTATTTTATGAGAGGACTCGGAG TGATATAGAACTATATGGGCTAGTTAGAACCGACGGTTGGACTTAGCTAT GCAAGGATCTAGGTGTTACGGGACGTTTTCGTTGAAACAATACGCCTGCC AAACTCAGGGCCACAGCCTTGGGCGGTACCTGTATATCACAGTGGTTCTC GATTGACTTAAATTGTAAATACAAGAATACAGCTAGAGTAGCCTTTTCAT GTATATGCATACATAGCCTTCCTCGCTGGTAACATGTTCTATGTGTTTGT ACTGTGCACAGTGGGAATGATTTTGAATCGTAATAGTTACATGGTAGTTA GGATACAGTGACAAGGGTCATTGTTTGGGGCGGGCAAGCTAATTGTTGCA AGTCATTGCGATCATTGTGACTTGCAATTTGATCATAGCAATGCTCTTGC ATAGTTCTGCCTTGAAGCTAGCGAGCAGACTTTAAATCTGAGGAACTGAA GTTATGTAAAAGACCGTTATCCATACACAAGCACAGAAACAACGTTGCGA CCGCAGTGGACACTTTTCAACTTATTTTCCCACAGGTCAAATCCAGTGTA GCCATGTCATCCGCCGACGAGGAATGGGTCCTGTACTACTGGGGAACTCC GCCAGGGGGAAAACCATTTTGTGGAAGAGGGGAGTTCGTCAGGCTCATCT TTGAGGAGACAGGCGTCAAGTTTAGAGAGGTCGGAGACCATGAGGTCCTG AAGAATATGTTTTTCTCAAAGGAAATGGAAAAACAAGTAGGATTCCCCTC CTTTGCCCCGCCCATGATTCAAAGAGGTCAGAAAAAGACAATATTCTTTA CCAAATGTTTATTTTCTGTAAATCTTCTTTCAACAATCCAATTACAATAA AAATGCACGAGGGGATAACTACCCAGAAATAACCATAGTATTGCAGCACG TGCCCTGGCGGCGTTTTGCATTTCATATTGATGATTATTCATGATGTTTC TTAGATATCATATTTGAAAATCTCCTAAAATCACTGACTAAATCGCTATG TATCACTAGAAACAGCAATCATTATTTTTTATGTACCCATTGAAAAAAGT GTAATTCATTAAAAAAATTCATTTCAGGTGCCCTCTTGTTTTTCATATTT GTTTTCGCTCATATTTGCCACGAATGCCTTTTTCTCTTTCAATAACGATG TTCCCTCTCGAGTTCATCCGTATATTTGTTTGTTTACTAAAGCCCTTATC TCACTGGGCGTGCGGCACGTTTACGAGCTGCAATCGGGCGATTTGACAAA GCGCTCACCAAATTTTATTGATAAAAACAACAATATTTTTACGCTTTGTG TGTTTTGTTGTCTTTTTAGTCATACTTTTACGCTTTGCATTGTATTCCAA GGGTAACACAAATCAGTTTAGGACGCGGCGCGCGACGCCGCCAACGTGCC GCGGGCTCTGTGAGATAGGGGTTTAATCGTGTCATCTCCGATCTTCTTGT TTCCGGACGGCAGGAAAGTTCCGGCTGTCCCAGACGCCTGTCATCTGCAG TTACCTGGGGAAACAGTTCGGGCTGTGGCCGGAGTCTGAGGAGGACCAGT GGCACGCGCAGCAGCTAAACAATACCATTCACGACTTCATAGCGGAAGGT TACTTCACTTTGCTTGATTTAGCCCCCCCCCCATAGTTTCAATGCTGTAT ATACACTTGTTTATGTTTGTTTATATGTGTGTTATGCCTAACTTGGAGCA TTATAAGGCGCATGTCCGGACAGATTTATTTAATCCACTCACATCGGGAA GTACCCCTACTCTTTTTCGATAAGTTGCGGGGTGTGACTCTTCTCAAACG TTGGACCTATAGTTAACGTCCGAGGAACGTCCCTAACCGAAGGTAGGTAC TCCTTTTTACCTGCAGTGAGCGAAGTAATATGAACATATATAGCGTTCAA GGTATAGCAGGAATCCAACCCGTGATCTCTTGGTCTCTTCCATGTTGCAG GACGCCTGGCTTTCCACGGTCGGAACAATGTCGAGTCTTACTACACCCAG AAGGAGGAGACCCAGCCGTACATCGACAGGTTCGTGGCGACCCGCCTGTC CCGCTGGCTGACGTGTCTAGAGACTGCTCTGAAAGCCAACAAAGGCGGAC AAGGGTAAGCTGTCATGTCAGTCTATTTCTGTCGATCGTCAGCATCGCAC TTTGCTTATCATGGTACGTTCTCCCTTAAATCGGGTGTTTCACTGGGCTG CGCCTATAATTGCACCAAATTAAATCGGCGCCAATCAGCGTCAATTTTGC GATTTTGGCAAAATGGCTTAAATGGGCGCAAAATGGCGCAATCACTGCGA ATCTCTTTGATGAAACTTAATCATTATACAATGGTTTTTAAGTCAGTGCC AACGTTAACACTGCGATTTCCGATAAAGTTATATCTTGTATCTGACCTGG AGCCAAAACTGAGGATGTGACATTCCGGGCACGGCCATTTTGTTGGTAGA GGTCACGCCTACGTGTGACCGTAAGGGAAAATTGGCGAAAATTCGCAAAG TTGGCGAAAATTCGCAAAAGATAGGCGCAGTTCAGTGAGATACCAGCTTA AGGCTCGTTCAACAAGTTAGTATAAGGTTTTAAGTTTAAAAATCTGGCAC GGCATTTGGAGAACAAAGTGGCCATTCTCGCGTCAGCTGTTGCGTCCGCT CTACAAGTGGTTATTTCGAAGAATATTTACGATTAGAAATTCCACCAGGG TACTTAATCCCGCCACCCTAAAAAGATACGTCCAAACAGATCTCCAACCC AACGTTCCCCAGTAAAATGCACTCGTAGCCTGTACATCTTATAACTGTGC ATACATGGGGAGTGCTGCACTAGAGATCTCTGAAACCCACTGGTTTTCAA AGTGGCGGATTTATGTAACCCGGCGGATTAATGTTAATGGAGGTCTCATC CCCACCTTACCGAATTGCACTTAACGGAGTGCATTGTTAGATATCTAACC TGTTGCGTTCTATATGCCCTGTCCTTGGTGAAGGTTCGTTATAGGTGACA AGCTGACATATGTGGACCTGGGCCTGCTGCATGTTCTGCGGGCTACCGAG GCACAGTTCCCCGACGCCTGGGCCTCCAACGACTCCATCCCCCTCCTCAA GGCCTTCAAGGACCGCCTGTCTGCCCGACCCAACCTGGCGGCATACTTCA AGTCAGACAGGTGCAGGCCATTTGAAGGGAACAGCATGATGTGAAGACGA TTCTTCAAAAGCGCCCCCTTTCGATCTCTACACGATTTGAAACATTCGTC AACTGGTGATATGTTATATTACGTCACAGCTATTTTCCCAAGTTCTAGGA TGTGCTACTTCGGATTTTCTTGAATGCAAGACAGATGTGGTGTGTTTTCA TGTAAGATACAGTCGCTTCTGTTTGTCGTCAACGTTACTTTGCCGTTGTA GTAAAAAAAATGATATAGTTTTTATATCGTCCAATCGATAGCCGCAGTGG CTGCCATTGAAGTCAATTATAGAAGTGATGATGATAATAATAGATAACAG TGGCCCGTCAGTAGTGTCATTATCTGTACTTTATTACGACTTTATATCTA TATTCCTATACTTAGCCCTGTAGGGCATGAATGTACAATAAAGGTCATCG GTTATTTGATAACGTTATCCTTTATGATGTCTGCAACTAAAAAGCCCCTG CAGTTCCAGTGAAAGTTGCTAGAGGGCCCCAACTTGTGTCACATTTTCAC GAGTACAATGAATATCTAACACCCTGAAATTATGACCAAAGCATGTACAG AACACGAGATATTAAAATCTGAAATCCTTCTGCAGTACCAAGGAACGTCA CCAGGAGGCCCAAAATCTAATCGTTGTTTCATATTTTCATTTATCACCTA CCAACATACCAAATATCATACGGATCCATCCCGACTTCTCGAGTTATTCT AGCTTCGTGATAGCCATGACATTTTGTCTCAACTGAAATTCTCTCCTTTA GATTTAGAGGTTCTGAAATGCCTCTGCTTTACTTAAGTTTCCAAAAAGAA CTAGAATGGCAACATTTTCTGGAAAATGCAGAATATTCCCCTTCCATTAC CTACACCTCAAATATGACATCCTTAGCATTGACTGTAAGGATATTGCCAA GTTTCTGCATACATTATGCAAAGGAGGTCGGCATTAGCATATAGCATCTC AAATATGACATCCGTTATGATCCGTAGCTTTTATGGTAAGGGATATGCAT AAATTATGCATAAATTATGCATAATGCACTCATTAGCATAATGTATGGCC AGGTTTTCTGGCCTTTCCTAAAGGTACCTGCATCTCAAATATGACATCCG TAGCCTTTACAGTAAGCTAAATACAAGTTTATGCATAAATTATGCAAATG AGGTCTGCATTAGCATAATTTTTATACAGATGTGTTCACCTCTCCTAAAG GTACCTACATCTGAGATATGACATCCGTAGCATTTACGGTAAGGGATATG CATAAATTATGCAAACGAGGCCCTCATTAGCATAATTTATGGCCAGGTTT TGTGACCCTTCGTAATGGTACCTACATCTCAAATATGACATCTGTAGCTT TTACGGTAAGGGAAATACAAGTTTCTGCATAAATTATGCAAATGAGGTCC TCATTAGCATAATTTATTGTCAGGTGTATTCACCTTTCCTAAAGGTACCT ACATCTCAAATATGACATCTGTAGCTTTTACGGTAAAGGAAA

Coding sequence (CDS) from alignment at Sc0000006:32903..42694+

>BlTCONS00016308 ID=BlTCONS00016308|Name=BlTCONS00016308|organism=Branchiostoma lanceolatum|type=CDS|length=723bp|location=Sequence derived from alignment at Sc0000006:32903..42694+ (Branchiostoma lanceolatum)
ATGTCATCCGCCGACGAGGAATGGGTCCTGTACTACTGGGGAACTCCGCC
AGGGGGAAAACCATTTTGTGGAAGAGGGGAGTTCGTCAGGCTCATCTTTG
AGGAGACAGGCGTCAAGTTTAGAGAGGTCGGAGACCATGAGGTCCTGAAG
AATATGTTTTTCTCAAAGGAAATGGAAAAACAAGTAGGATTCCCCTCCTT
TGCCCCGCCCATGATTCAAAGAGGAAAGTTCCGGCTGTCCCAGACGCCTG
TCATCTGCAGTTACCTGGGGAAACAGTTCGGGCTGTGGCCGGAGTCTGAG
GAGGACCAGTGGCACGCGCAGCAGCTAAACAATACCATTCACGACTTCAT
AGCGGAAGGACGCCTGGCTTTCCACGGTCGGAACAATGTCGAGTCTTACT
ACACCCAGAAGGAGGAGACCCAGCCGTACATCGACAGGTTCGTGGCGACC
CGCCTGTCCCGCTGGCTGACGTGTCTAGAGACTGCTCTGAAAGCCAACAA
AGGCGGACAAGGGTTCGTTATAGGTGACAAGCTGACATATGTGGACCTGG
GCCTGCTGCATGTTCTGCGGGCTACCGAGGCACAGTTCCCCGACGCCTGG
GCCTCCAACGACTCCATCCCCCTCCTCAAGGCCTTCAAGGACCGCCTGTC
TGCCCGACCCAACCTGGCGGCATACTTCAAGTCAGACAGGTGCAGGCCAT
TTGAAGGGAACAGCATGATGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00016308BlTCONS00016308-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00016308-exon-Sc0000006-1564993656:32903..33010BlTCONS00016308-exon-Sc0000006-1564993656:32903..33010Branchiostoma lanceolatumexon
BlTCONS00016308-exon-Sc0000006-1564993656:38538..38778BlTCONS00016308-exon-Sc0000006-1564993656:38538..38778Branchiostoma lanceolatumexon
BlTCONS00016308-exon-Sc0000006-1564993656:39466..39600BlTCONS00016308-exon-Sc0000006-1564993656:39466..39600Branchiostoma lanceolatumexon
BlTCONS00016308-exon-Sc0000006-1564993656:39953..40106BlTCONS00016308-exon-Sc0000006-1564993656:39953..40106Branchiostoma lanceolatumexon
BlTCONS00016308-exon-Sc0000006-1564993656:40986..42694BlTCONS00016308-exon-Sc0000006-1564993656:40986..42694Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:32903..42694 +
Properties
Property NameValue
GeneIDBlCUFF008046