BlTCONS00000625 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000625
Unique NameBlTCONS00000625
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:4503663..4511903+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000625 ID=BlTCONS00000625|Name=BlTCONS00000625|organism=Branchiostoma lanceolatum|type=mRNA|length=8241bp|location=Sequence derived from alignment at Sc0000000:4503663..4511903+ (Branchiostoma lanceolatum)
GCTCAGAGAGGTATATACTGTTATCGTTGTCTTTCCCCGTATCTTTGTGT TCTTGGCTTCTTAGCCATGGCGTCTCAGAGAGTGTCCCTTTCTTTGTAAT ACCGTCCTCAGTGTAGCGTTAAGTATATCATAATACAGTACTCCAGGGTA AAAGACGCCGTTACAAACACTGTTCTTAACGACAAGGTAGAAGACGCCCC GAGAAGCACCATGGCTAGATTGGAGGCTATCTTTACTCCTACCGGTTGTT TTTCTCCGGTTGTGTTCTCCCAAACCCGTGTATCGACTACACGTATGTTT GGTTTTGTCTGAGAGCGTGAAGCGTGACGGAGGTAGTAGTAGCGGAAGGA GTAGCAAGTGTAACATTCGCGAGGATTGTTTGCGTGACCAAGGAAGTTAA AATCAAATTGGCGAGACCCATTGAGATGTCTTCATATGATGGCCCGACCA ATATTCTATGCTGCTTGCAGACAGATTTTTGGTCTGCCCGGAACGTTCAC CATTACAATACAAGCCACTAGTATGTTTGGTTTGTCTGGGTGAATGAAGC GTGCCGGGGTACTAGTAGTACAGGAGGGGCGGAAAGAGTAATAGTCGTGC GACTGGTTTGCTTGACCCAGTATGTATGCATGGGCGTCAAAGAATGTCTA GACGTTGGAAATTCTTCCAATGATTGTAAAAGCTCACGATCCCATACTAA ATACTCTTGGATCAGATAGATTAGCCTTATAGAACTGTAGATGCCATACT TTGTACCTTGTACAATTGTTGTGCAATAAAGTTATTATTATGATTAGCCG ACCAATATACTATACTGCTTACAGAAGATTTTTTGTCTACCCGGAACGTT CCCCACTACAAGTCACCATGCCGGCTCTCAACTCTCTCAACGTCTCCTTC GAGAAGAACATGGACGTCTTCCAAGCTGGACAAGTCGTCAGGGGGCAGGT GGAGGTGGATCTTAAGGAGGACATGAAGATGAGAGGTGAGTCTTAGATTG AAGTCACCAGGTAGACTACTGTAAACGCGGTGGTTTATGTTCGCGGTTTT CGCGGTGAACTTAAAGCCGTTTCATTGTGTGACTGTAGCACTACTATTGT TTCAAACGCGAACTCAAAACTACCGCGAACACTCCATTTCCTCCCTACCG CAAAATTAAATCCCCTCGAATATTTCTGCATTTACAGTCTCATGGGGTTG AAAAAATAAGGAAGCTACATGTCATCTTCTCCATAAGAAAAGTATCGTCT GCAGATAACGATTCCTTCATAATAAGTTTATTGCAAATGGTGCCTGGTTT CCTTCTGGTAGCTTCATTTTGAACAGAATTGTATATTTGCAGTGTATTGT GCATGTTGGTCGTGACCCATTCTCTCATGCCACGGTCGTTGCTTGACATA TACAAGCGAGGGGCCTTGTCCATTGACTTTTGTATATGTAAAGCAACGGC CCTGGCGAATTGTAATGTGATCGTCCTTCTCACTGGTTGGTCAGCCATCA CTAGCCAATCACGTCGCCGCCTGCGGTCAAGAGGCAACTTGATTGGCTGG TAGCTTCCCATCCAACAACAGGAGGGGGAGTATCTGATTGGCTGTCCAGC GCTGACGTAGCGGGAAGGACAGAGCGCAGACCGTTACACCAGGGTCGTTG CTTGACATAGAAAACTGGAAATCTTAATTGACACAACAAATGTACAGCAA CTTTCGGAAGCTCTACTACATCTATACATACAAACAATCAAGTGGATACA AATGAATTAACATATACGTAAATGTATATGGAAAGATATGAGTGAATCAA CATGTTGAGGCCAATGTATCATTTACACAATTGTTTCTAATGTCTAGACA TTCTTGCTTTGATATATTAACCTATTTGTACACGGTAAGGGTTGTCTCCC CCTAGAATGTAGTTGAATTTATCTATGGAATATACCAACGGCGGGCCTGA CATGAGACATGATAATGGTGTTCAATTTGTTGGTCGTATCCTTGTTCAAC TTGAAAACATGTTATTCAACATTGCTATCCTTAGGCATCAACCTGACACT GAAGGGCTCTGCAAAGGTTCATTGGACGGTCCACACCGGGAAAACAACTA TCTATTACTCCGGCAGGGAAACTTACTTCGACAACACGATGACACTCTGG GGCTCAGGTAAGGCTAGGGTCACAATTCCAAGCCGGGGCCCGACCGGGCT GTTTGAGAAAACAAAGAATAAAAAATGCAAATCAAGAATATACATAGCGT ATGGTAAGGAGAAATTTCTAAATAGTTTTGTGTGTTTTGTTGTCTTTTAT ATCATAGTTTTCGTTCCCACGAGCTACCCGGCCGGGCCCAGGGTTGGAAA TGTGACCCTAGCATAAGTAAAACACGTTCTTCAAAGCCCGGAAAGTCATT TCAGGCTTGGATGCGATCAGAGGAGCGAACTGGAACTAGGATAACGTGGG TTCCAGGCCTTGATTGGGTAGTATTGGCGGTGGGGAGTACAGTCACCGGA AGGCCCTGAATGTGTGACAGGAACGTTAGACAGGTTAAATCGAGGCAGAC ATGTTGTTTTCTATTCTCCAAGCAGAGGTTTCGATCGGGGGCTAGTAGTG GCCGGGATTTTTAACGCTGCGTAAAAGACCGGCCCCTACTTGCCCACCGA TCGAAACCTCTGCTATTAAAATAGTTATTTTCTACCACCCTCTGTACATA CATATGGTACATACTTCTTTCTCTGCTAAGAACTCAGCATTTGGGAAAGA GTTTGGTAGTTAAACACACACCACTACCAGTGGATTAGCCCCCCGCTGTA GTGATAAAGTTGTGTGGCCCAGGGCTACCGAAACGGAGATGGGCGCCGTC TGGTGCGGGGAGGACTTTAACTTTAACTTTCTGTAGGTAAGAGCCAGTCT GGAGACGACCCGGTGCTGCCGGCAGGGAAGCACAACTTCCCGTTCCAGTA CCAGCTCCCGAGCGCGGGGCTGCCCACCTCGATCGAAGGCTGGTACGGCT ACGTGCGGTACCGGGCCAAGGCCGTCATCGACAGGCCGTGGAAGTTCGAC AAGACGGCAAAGAAGCTTTTCACCGTGCTGGACATGTACGATCTGAACGA GGATCCGGAAGCGACGGTAAATGAATGACTCCTGATAATGAATGAATGAA TGAATGAAAGACCTTTATTGTGCATTCATGCCCCGAGGGGCTAGGTACAG GTCGTCTAACTAAACACATGGAATATACAAGGACATAAATACAACAATAC AAGCTGTAAACATATATAGTAGACAAACGTATTATTTAACTAAGCTAGTC CAGTAGTGTCGACTTCTTCTCGCTTCTTTGTACATGTGTAAATGTATGAA CAGACAATATTTCTTATACAAGGATTATCCAGGCGTAATAAATATATGAA TTTGTCTGCTGCATTAAGATGTTCGAAATATGGGAATTTTTCTTCGATAA AGTTAAAAAGTACACTACTTTCGCTATCGTATAATTTGAAATCTAGGACG AAATGTTGCTCATCTTCTACTCGATTTAGATTACAATGTTGACAAAGTCT ATGTTGTAGAGGCGTGCGGTTGTGCCTTCCTGTTTCGACATGTAATATAT GACGGCTAACCCGGAGTTTAGTAGTAGCCACTCTGTGTTTGATGTTGCTA ATGGATAAATACACTTCTTCTTTATACAATGACTGAAACAGACGGTAAGT TCGGAGTTTGTTGCTATAAGATTTATCCCTGTTATCGTTGTGGATTTCGG CTGAGAATGTTTGAGTATAGATGTCTTTTAATCGTTGACTAATGGAGTTA ATGATAAGTGACAAATTTGTTCCTTAGGATACTTGTGGGCTCCAAACAAA GGCATAACCATATGCTTAGGTCTCAATTGGAAAAGGGGGCCCTGTCGGCC TGAAGTTTTGCACTTTCGGGCATTATAAAGTACCCCTACGTGGTCCTGTA GGGCACCATGTGGCTACCGGGCTATTGTGGGGTACTGCCGGGGCCCTGGA CGTTTTTAACGCGGAGTTATAATCAACGCGGGGCCCAGTAAGAAATAGGC ACCGTGAGCTAACCATGCAATCACCGAGAGGTCTTCCCTTCTTCGTTATA AAGAACCCCTACGTGGCCCCGTGGGGCACCATGTGGCTACCGGACTATTG TGGGGCACGGACGGGGCCCTGGAAGTTTTTAACGCGGAGTTATAATCAAC GCGGGGCCCAGTAAGAAATAGGCACCATGAGCTAACCATGCAATCACCGA GAGGTCTTCCCTTCTGTACCCGGCAGTCTACCAAGACAAATTTCTTCTCT TCGCTAACACTGGCTCAATCGCTTCGCTTGCTAACTATGGTGGTTAGCAA GCAAAAATATTGAGCCAGTGGTTACTACGGAGGCACCCAGGCTAGCTTCT ATTAAGTTCTAACCGAAGTTCTTGCACAAAATCTCTTTCCAAGACAATTC AAACTGCCGAAGAGTCCAAGAAGCTTGGCGTGTGGCCCTTCGCTTCTGAT CCCATCGAGGTTCACGTTCAGACGGACCGGGGCGCGTACTGCCCGGGGGA GACCATCCGGCTCAGCGGGACCATCAAGAACGGGAGCGGCACCGACATCA AGGAGACGACTGTCCAGATCCGACAGGTGTGTATTTTTCTTAACTAAAAA GCTGCACACTTCTTTATGAAATCTATCGATCAATAGCTTTATTTACAGAT CCACACCCGAGTACTCGCCAAGCAGAGGTCGGTGGGGGAAGATTGTGACC TTTTTATCATATGCCTCGTTTTTCGTCCGCTATCCCCCACTGAAAGTATA CCCGAGAGCTAATGTCAGTTGAAACAAGAAGCAAAGATTATCATATACCT CCGTGAAATGTTGAGTGGATTTCTTGTTATATTCATTATTGTGAACTTTG CTCTGATTCTGTCTATGCATTTTCCTATTGGCCTCCATTATCACAGGGAA ATAAATACTCTCCAAGCAGAGGTTGGTAGGGAAGATTGTGACCTTTTTAT CATATGCCTCGTTTTTTGTCCGCTCTCCCCACCAACCTCTGCTTGCAGAG TAGAAATAAAGAGAGGGATCCAGATAACCTTTGGTAACGCATTCTGGGAC ATTTCTGGGACCTTTGACCTAATTTCCTGTCAGTGTCCCCGACGTGCCAA GCATGTGAAAATGAGTACGGAACATACACACACAAATATTGCGCGGAGGT ATGAGATCTTAGATTTCCTGTTTGAAAAATATTGTTTTCTATAACCACAG AGAGTGACCTTCATCGCTACCAGCCCACACAAAAGTAAAAGGAACAACCG GTCTACGCTGAGTGAGATCAAAGCGTACGGCTGCAAGAGTAAGGACACGG CCGACCTGAGCGGCATCTCCATTCAAGTCCCGTCCATCCCGCCTTCGTCT CAGCGCTACTGCAACGTCATCGACGTGGTCTACAAGCTGAAGGTATACCG TAGATTCAGTTAGTTTGTTTAATTTCGCAACAGAAAGGTGAAAAGGTTTT TTTCGGTGTTTCAAGTTTGTGGGTTGAAACGCATATTCGCAGTGTCATAA ATTTAGGTTTCTGTTTAGGTTAATGTCGCGATGGACAGGTCATCACGAAA ATAAGGTTTCAAAAATGCAGTAGTTTCACTAAGACGCTATCGATCTATCT ATCTATCTTTCTATATTATGAATGAAAATATTAATGTCTGAAATGATGTT CACTTTTGTTACGAACTTGTCTGGCACTGCTACCATTTCATCAGTCTGAT ACACACAAATTACTTTTGCAAAAAAAGAAAATTCGTTCTCGTGTTTGTCT GTTCTTTGAAAACGTTCTCCTTTTTGTCCGCCCAGTTCATCGTAAACATC CCCGGACCCCAGACTTTTGTAACCAACTTGTCTGCCAGTTCTGCTATCAT TTTATCAACACATAAATTGCTTTTAAAATAAAGGAACCTCGTTCTCGTGT CTGCCTAGTGGTGGCGTTTGTAGTCCAGTGGTTAGCGATTTTGCCTCTGG AACTAGAAGCCCCGGGTTCGATCCCGGCTGTGTCGCTCACCCGACATGCA CGCTACTGGAAAGGGTCGCATTCCTTAGGACGGGACGTTAAGCCGTGGTC CACTGTTCATTGTGCTTGTCGAAAAGAGCTAGGGGAATTTCCCCGGTGCA ATGAACCTGTAAATACTGTACATAGCATCTGTCTTCTCCGTCACGACCAG TGGAAGATTAGCTCATCTGTTCATTTGAGCTAAACTGGTTCGAGACCACT TTCCTTTGCTTTCCTTTTCTTAGCTGTTTTTTTAAACGTAACGTTCGTCT CCTTTTTCCGTCCGCCCAGTTCATCGTGAACATCCCCGGACCCCACACGG ACCTGGAGGTGGACCTTCCCATCACCATCGGCTCCATCCCGCTCAGGAGT TATTACCCACAAGCCCCTTCGTTCCCTCTACATCCGGTGGAGAATCCGCC ACCACCTTCCCAGGATTCCTTGTACCCGGATCTCGGCTTCGCTCAGTGGA CGTACCCAGCAGCCACCGACCCGAGTGCACCTCGTAAGTAATATATGGTC TTCTGTAATGTCTGTTGTTGTTGTTGTTGTTGTCACGGTCCATTTTTCCG CTAGACGTGGTCACACGTTACAGTCTTTTGACTGGTGCTTCTTGGGTATC TCTCTGGTGCTTCACCTCAGGTGCTTTGCTCATGCGTGTTTCGAATGCGG TTACTAGATAATGTCTCCATGTGGGAACCTTGGCGGTTCAACTTTTGCCA CTTCCATATTTACAGCTTTGCTTTGTTTGTATTGTATGCCAGGTAAACCG CCTCATGAAGGACACTTTGGGGATGAGTATGCATGGTGATCTTGCCTGAC AACAGTTTTATCCTATACCTCTATTTTGTACTATGTTTTAATAGTTGTTG CCATACATTGCACCATGTACAATTGTCGTGCAATAAAGTTCCTCTTCTTG TCTTGTCCACAGCTCCCCCGTACTACGCCGTGTCCAGTACCGGTCCCGTG AAGATCAAAGACGACGAGGAGAAAGACGACAAGTACGACATGGGGCAGAA GGAGTTCGCCCCTAAATACACGTTCTACGACTGGAGCAAGCACCCTTCAG TTTAACCTCCACCAGGCCTTCCTACGGGGGTAAAGGGTAGTCTCTACCAG ACTAACTACCCCGGCTATAGGGATCATATTTGCCAGCGGAAGGCTCCGTT GCGGGCGAAATGTGATCTTTACCGTGGACTGACTCTACTCAGTCTTCTGG CTAATCATTCCTTTTTCTAAATTCTATGATCTATACGCCCGTAGGAGGGC CTGGTGAAGGCTAGGTTTCTTGAATTTGGCAAGAAAGGAATAATTGGCAA GGAAAGTCAGAGTACCTGCAGGTGAAACCTTATGGTGGCCAGACTTCCCT GGAATATTCTCCCAGTAGCCGGCGGGGTTAGTCTGGTATGGACTTACTTA GGTCTAGTTTTGACCTTCTACCGTCGATAATGCGAACCCGTGGTTTCTTT CGGTTGTGTCTACAGCGCAAATGCGTCACTACTCTATTCAACCGATTCAA CGGAAGTATTAGCATGGTGAATTGATAATTTAAGCTTCAAATCAGGAGGT ACACAAAATGTTGTTGTGTTATTATGGCAGTGTGTATTTATGGCGCAAAT ACGTCACTACCCTATTCAACGGAAGTATATTAGCATAGTATTTTGATAGT TTTAGCTTAAAATTAGGAGGCACACAAAAATGATGTTGTGGTCTTATGAC TTATGGAAGTTTTTATAGCGCAAACACGGCTATTCTGTTCAACGGAAGTG TTAGCATAGTATTTTAATAGTTTTAGCTTCCAATTAGGATGTACACAAAT GTTGTTGTGTTCATATCTTAATGGCAATCTTTCTTCGTTACGGTATCATG TTTCTGTCTAATGGTGAATTCTTATTAGTTTGCAAAGATATTTTGAACTT TTCTGGTGAAAAAGATGTATAAGTGAATACATCTACTATACTACGGCGAC CCTACAATGGACCTGAACTGTATTCTGGGTTGAAGGAAATGTATATACTG TATAGCTATCAACTTCAAACATTACTAATTTTAACGGCATATAGGTGCTT TGTAAAGGTGCGCTAATAGAATCAATGCTACTTTGTGTTGAAAAACATAG CTTCTTGGGTCAAGATAATTAACTAGAAACTTTTCATACAACCATGTATT TTGCGCCAAGGTTAAAAAGTCAGTAATAAACAGTTTCGTAC

Coding sequence (CDS) from alignment at Sc0000000:4503663..4511903+

>BlTCONS00000625 ID=BlTCONS00000625|Name=BlTCONS00000625|organism=Branchiostoma lanceolatum|type=CDS|length=1254bp|location=Sequence derived from alignment at Sc0000000:4503663..4511903+ (Branchiostoma lanceolatum)
TCAGAGAGAAGATTTTTTGTCTACCCGGAACGTTCCCCACTACAAGTCAC
CATGCCGGCTCTCAACTCTCTCAACGTCTCCTTCGAGAAGAACATGGACG
TCTTCCAAGCTGGACAAGTCGTCAGGGGGCAGGTGGAGGTGGATCTTAAG
GAGGACATGAAGATGAGAGGCATCAACCTGACACTGAAGGGCTCTGCAAA
GGTTCATTGGACGGTCCACACCGGGAAAACAACTATCTATTACTCCGGCA
GGGAAACTTACTTCGACAACACGATGACACTCTGGGGCTCAGGTAAGAGC
CAGTCTGGAGACGACCCGGTGCTGCCGGCAGGGAAGCACAACTTCCCGTT
CCAGTACCAGCTCCCGAGCGCGGGGCTGCCCACCTCGATCGAAGGCTGGT
ACGGCTACGTGCGGTACCGGGCCAAGGCCGTCATCGACAGGCCGTGGAAG
TTCGACAAGACGGCAAAGAAGCTTTTCACCGTGCTGGACATGTACGATCT
GAACGAGGATCCGGAAGCGACGACAATTCAAACTGCCGAAGAGTCCAAGA
AGCTTGGCGTGTGGCCCTTCGCTTCTGATCCCATCGAGGTTCACGTTCAG
ACGGACCGGGGCGCGTACTGCCCGGGGGAGACCATCCGGCTCAGCGGGAC
CATCAAGAACGGGAGCGGCACCGACATCAAGGAGACGACTGTCCAGATCC
GACAGAGAGTGACCTTCATCGCTACCAGCCCACACAAAAGTAAAAGGAAC
AACCGGTCTACGCTGAGTGAGATCAAAGCGTACGGCTGCAAGAGTAAGGA
CACGGCCGACCTGAGCGGCATCTCCATTCAAGTCCCGTCCATCCCGCCTT
CGTCTCAGCGCTACTGCAACGTCATCGACGTGGTCTACAAGCTGAAGTTC
ATCGTGAACATCCCCGGACCCCACACGGACCTGGAGGTGGACCTTCCCAT
CACCATCGGCTCCATCCCGCTCAGGAGTTATTACCCACAAGCCCCTTCGT
TCCCTCTACATCCGGTGGAGAATCCGCCACCACCTTCCCAGGATTCCTTG
TACCCGGATCTCGGCTTCGCTCAGTGGACGTACCCAGCAGCCACCGACCC
GAGTGCACCTCCTCCCCCGTACTACGCCGTGTCCAGTACCGGTCCCGTGA
AGATCAAAGACGACGAGGAGAAAGACGACAAGTACGACATGGGGCAGAAG
GAGTTCGCCCCTAAATACACGTTCTACGACTGGAGCAAGCACCCTTCAGT
TTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000625BlTCONS00000625-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000625-exon-Sc0000000-1564993656:4503663..4503672BlTCONS00000625-exon-Sc0000000-1564993656:4503663..4503672Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4504487..4504647BlTCONS00000625-exon-Sc0000000-1564993656:4504487..4504647Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4505697..4505819BlTCONS00000625-exon-Sc0000000-1564993656:4505697..4505819Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4506549..4506778BlTCONS00000625-exon-Sc0000000-1564993656:4506549..4506778Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4508106..4508288BlTCONS00000625-exon-Sc0000000-1564993656:4508106..4508288Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4508913..4509104BlTCONS00000625-exon-Sc0000000-1564993656:4508913..4509104Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4509982..4510195BlTCONS00000625-exon-Sc0000000-1564993656:4509982..4510195Branchiostoma lanceolatumexon
BlTCONS00000625-exon-Sc0000000-1564993656:4510625..4511903BlTCONS00000625-exon-Sc0000000-1564993656:4510625..4511903Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:4503663..4511903 +
Properties
Property NameValue
GeneIDBlCUFF000335