BlTCONS00000611 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000611
Unique NameBlTCONS00000611
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:4454619..4457537+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000611 ID=BlTCONS00000611|Name=BlTCONS00000611|organism=Branchiostoma lanceolatum|type=mRNA|length=2919bp|location=Sequence derived from alignment at Sc0000000:4454619..4457537+ (Branchiostoma lanceolatum)
TGAACTTCGCCCATACATGAAAACCGAACAAGATGGCGGCTCTGTCTTGT AGCGGCTGTTTTGACACCTCTGGACCGCACAAAATCCTCCCGTGTGCCCA TTCATTCTGCTGGCGATGTCTCGTCAAATGTGCCGACCGAAGATCGGACC TCTCCTGTCCGATCTGCGGGGTGATCGTGCGCCTACCACCGCAGGGAGTT CGCGGCCTCAGCGCTCACTTCCTCGTGGACGACTTGCTCGAGAAATTCGA CGACGATTTGGAGAAGCAGTCTGAGAAATACTGCTCGGTCCACAGAGGAG AAAAGCTGACGATTTTCTGTCAGACTTGCGTGGAGGCCGTCTGTGTTCAG TGTGTGGGGGCATGGCACAGTGGCCATCAAATGGGCGGTCTGACTGGGAG CGGCACTGTGACTGAGAACGCCAGATCTCTTCTTGTACAGAGCAAGGAAC AGGTACAAGAACTACACAGGCTTCAGTGTGGGATTGACTCGACCATCCGT CAAGTTGACGACTGTAGGGAACGCATGGAAAACGGGATCAAGCTAGCAGC ACGGAAGGCAATCGAGGGCATACAACGGAAAGAGGCAGAGCTCATACAAG AGCTAGAAGGCAGGGTGGGGCACGAACGGTTAGGCTTGGAGCAGGAAAGG CGGGAAATTCAAACTGCAATAGGAGCGGTGGCTGAGGGATGGAGGATGGT GGATGGAGAGTACTCAGCCCGGGGAAGAGAGCGTCTGTACGAATCCATGG GGCATCTTTCCGACAAGGTGGACCAAGCGCAGGAGACGGTACGGTCGACT TCCCGCTCCTACGAAGTCGACTTGAGGTTTATTCCCTCAGAGTACGAGAG CGAAGATCTACTCGGAAGCCTCGTGGTCAACATCGGCGGTGACGTTGAGA TGAAGGAACGAGTTTCAGGGCGATACCAATCCATGGCCAGGGGAGAACTG AGATCTGGAGCGACAGGGAGGGGCACGTGGTCCCAGACCACGTCCATGTT CGACGACCCGGCGAGAGAGGGAACATCAAGATGGCGCTCTGGCAAGACCT CTACGACGGTAAGAGTGGAAACCAGCAGTGGGACAAGTAAAGGGAGTGTC CTGTCGCCTCATTCAAGGAGCAAGTTGTGGCTCAAGGAGCAGGATAAGGA GGAGGGTGAGGTTCATACAAGTGGGCGCGCCCTAACCCCAAGTGTTCGTC CTTCACCTAAGCGCAGCCCCAAACCCAAAGGCAGTACCAAGAAATCAAGC GAAGATGGCAACAAAGAAAAGAAGAAGTTGGACGTGAAAGTCGGTGCTAC ATGTAGTCGGTCAGCATTAAGTGAGACCACATCCGACGTGGCGACGTCGT CTACCAGGGGCAAGAAACGTGGGAGGAAGGAGGAAGACGCCTTACCACCC AAAGACACTCCCAAGAAAGTAAAAGTTGAGGTGGAGGAGCTTGTGCAGTT TGGCGAGAAGGGCTCTCGTAACGGACAGTTTAACGAGCCGAACGGCGTGG CGTGCTCCAAAGATGGCGAGATGTTTATAATCGACCGAAGGAACAAGAGG ATCCAAGTCTTTGACAGCGAAGGAAAGTTTCGCAGAAAGTTTTCCACCAA GGTCAAGGGGAAGGACACGGACCCACGAGGTCTCGCGATGAATCCCGTGA GTGGTGAGGTTTACGTCACCGACTCGAAACAGAAAGTGGTGAACGTGTTC TCATCATTGGGAGAGCACATTCGGAGCTTTGGTGCAGGGGTGGTCAGCAT ACCGTGTGGTATAGCCGTGGATAGCTCTGGACGCGCATTCGTCGCTGATA TGGAGAATCACCACGTGACAGTCCATGACCCTGACGGGAACGTGGCCATG GAGATCGGGAACGCCCAACGAGGAGACGCGCACCTTCACATTCCGCTAGG CGTCGCTCTTGCCCCGAACGGCGACGTACTCGTCACAGACGGCTTCCTGT GTTGCATCAAACGTTTCGGTCCAGACGGATCCTTCCGCTCCAAGTTCGAC TGTCCCAAAAAGGACGAAAGGTACCAAGACCCCCGAGGTATCTGCGTGAC TCCGCTTGGTGACGTCGTGGCTTTCGCCGGCGGTAGCTGTGTGGCCTTGT TCGACCAAGAAGGCGAAGCAGTCCGCTGTCTTGTCACCCAAGAGAACGGA CTGGAGGCGCCTTCTGCAGTTGCCTACCAGCCCGAAGGGCGGCGTCTAGT TGTCACCGACACCAAGAAGCACAGCATCACAATGAAAACGATCTAAAAAC GTCATTTACAGCGCTTTAGCTAAGAATGTCCTACAAGCGTCCTAATGCAA TAGTTTCATGGATAGAGTTTTCTTGCTGTTCAGGGTAGATATTGCTGACG CGATTACACAGCCAAACTTACTAATACTTAATGAGTCCTACTATTAGACA GGAATTATCTCAGATTCATGTCTAACATGCTCTTATTTCTATATCTATAT AGCCGGTTTAACCGCCCTTCGGTGTAACACACCAGCTTCGCAGGCACGCG GCGCGGTAGCAGCTGGTTGTATTACACCGAACGACCACCGAACAAATTAT ATTTGTTGCACGAGATGTTATTTTGGAGTCCATAGTACATGGTTTCATAT TTGCTGTCTGCTTGGAATTCTGAATTATAGGTAACTTGGGAGGTCATTTG AATAGTAGAGGATTGAAACAAGATCCAGAAGCAGGTGTGCTTGCGTGTGA AACATTGACTAGCTTTAGAGACAAGTACATTATATATTTTAGTTATCAAT CGTTGGCGTTGCAGGTGTATAGTTGATATATTTGCCATGTCAAATATTGC GAGATTCGAAAATCACTTTATTCACTTTACAATGAGCTGTAATGAAGAAA AAGCGTTAAACCTAGTACTGTGCCTGTTTCACGCCTACAATGTGCTTGGT GTCTTTTTAATTAAAAATC

Coding sequence (CDS) from alignment at Sc0000000:4454619..4457537+

>BlTCONS00000611 ID=BlTCONS00000611|Name=BlTCONS00000611|organism=Branchiostoma lanceolatum|type=CDS|length=2214bp|location=Sequence derived from alignment at Sc0000000:4454619..4457537+ (Branchiostoma lanceolatum)
ATGGCGGCTCTGTCTTGTAGCGGCTGTTTTGACACCTCTGGACCGCACAA
AATCCTCCCGTGTGCCCATTCATTCTGCTGGCGATGTCTCGTCAAATGTG
CCGACCGAAGATCGGACCTCTCCTGTCCGATCTGCGGGGTGATCGTGCGC
CTACCACCGCAGGGAGTTCGCGGCCTCAGCGCTCACTTCCTCGTGGACGA
CTTGCTCGAGAAATTCGACGACGATTTGGAGAAGCAGTCTGAGAAATACT
GCTCGGTCCACAGAGGAGAAAAGCTGACGATTTTCTGTCAGACTTGCGTG
GAGGCCGTCTGTGTTCAGTGTGTGGGGGCATGGCACAGTGGCCATCAAAT
GGGCGGTCTGACTGGGAGCGGCACTGTGACTGAGAACGCCAGATCTCTTC
TTGTACAGAGCAAGGAACAGGTACAAGAACTACACAGGCTTCAGTGTGGG
ATTGACTCGACCATCCGTCAAGTTGACGACTGTAGGGAACGCATGGAAAA
CGGGATCAAGCTAGCAGCACGGAAGGCAATCGAGGGCATACAACGGAAAG
AGGCAGAGCTCATACAAGAGCTAGAAGGCAGGGTGGGGCACGAACGGTTA
GGCTTGGAGCAGGAAAGGCGGGAAATTCAAACTGCAATAGGAGCGGTGGC
TGAGGGATGGAGGATGGTGGATGGAGAGTACTCAGCCCGGGGAAGAGAGC
GTCTGTACGAATCCATGGGGCATCTTTCCGACAAGGTGGACCAAGCGCAG
GAGACGGTACGGTCGACTTCCCGCTCCTACGAAGTCGACTTGAGGTTTAT
TCCCTCAGAGTACGAGAGCGAAGATCTACTCGGAAGCCTCGTGGTCAACA
TCGGCGGTGACGTTGAGATGAAGGAACGAGTTTCAGGGCGATACCAATCC
ATGGCCAGGGGAGAACTGAGATCTGGAGCGACAGGGAGGGGCACGTGGTC
CCAGACCACGTCCATGTTCGACGACCCGGCGAGAGAGGGAACATCAAGAT
GGCGCTCTGGCAAGACCTCTACGACGGTAAGAGTGGAAACCAGCAGTGGG
ACAAGTAAAGGGAGTGTCCTGTCGCCTCATTCAAGGAGCAAGTTGTGGCT
CAAGGAGCAGGATAAGGAGGAGGGTGAGGTTCATACAAGTGGGCGCGCCC
TAACCCCAAGTGTTCGTCCTTCACCTAAGCGCAGCCCCAAACCCAAAGGC
AGTACCAAGAAATCAAGCGAAGATGGCAACAAAGAAAAGAAGAAGTTGGA
CGTGAAAGTCGGTGCTACATGTAGTCGGTCAGCATTAAGTGAGACCACAT
CCGACGTGGCGACGTCGTCTACCAGGGGCAAGAAACGTGGGAGGAAGGAG
GAAGACGCCTTACCACCCAAAGACACTCCCAAGAAAGTAAAAGTTGAGGT
GGAGGAGCTTGTGCAGTTTGGCGAGAAGGGCTCTCGTAACGGACAGTTTA
ACGAGCCGAACGGCGTGGCGTGCTCCAAAGATGGCGAGATGTTTATAATC
GACCGAAGGAACAAGAGGATCCAAGTCTTTGACAGCGAAGGAAAGTTTCG
CAGAAAGTTTTCCACCAAGGTCAAGGGGAAGGACACGGACCCACGAGGTC
TCGCGATGAATCCCGTGAGTGGTGAGGTTTACGTCACCGACTCGAAACAG
AAAGTGGTGAACGTGTTCTCATCATTGGGAGAGCACATTCGGAGCTTTGG
TGCAGGGGTGGTCAGCATACCGTGTGGTATAGCCGTGGATAGCTCTGGAC
GCGCATTCGTCGCTGATATGGAGAATCACCACGTGACAGTCCATGACCCT
GACGGGAACGTGGCCATGGAGATCGGGAACGCCCAACGAGGAGACGCGCA
CCTTCACATTCCGCTAGGCGTCGCTCTTGCCCCGAACGGCGACGTACTCG
TCACAGACGGCTTCCTGTGTTGCATCAAACGTTTCGGTCCAGACGGATCC
TTCCGCTCCAAGTTCGACTGTCCCAAAAAGGACGAAAGGTACCAAGACCC
CCGAGGTATCTGCGTGACTCCGCTTGGTGACGTCGTGGCTTTCGCCGGCG
GTAGCTGTGTGGCCTTGTTCGACCAAGAAGGCGAAGCAGTCCGCTGTCTT
GTCACCCAAGAGAACGGACTGGAGGCGCCTTCTGCAGTTGCCTACCAGCC
CGAAGGGCGGCGTCTAGTTGTCACCGACACCAAGAAGCACAGCATCACAA
TGAAAACGATCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000611-exon-Sc0000000-1564993656:4454619..4457537BlTCONS00000611-exon-Sc0000000-1564993656:4454619..4457537Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000611BlTCONS00000611-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:4454619..4457537 +
Properties
Property NameValue
GeneIDBlCUFF000333