BlTCONS00000584 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000584
Unique NameBlTCONS00000584
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:4227563..4231679+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000584 ID=BlTCONS00000584|Name=BlTCONS00000584|organism=Branchiostoma lanceolatum|type=mRNA|length=4117bp|location=Sequence derived from alignment at Sc0000000:4227563..4231679+ (Branchiostoma lanceolatum)
CACCATTGTTGATACTAAAGCGTCAACCCGGCCGCGCGCGGATCATTACA CGTACACACTTACCCGTACACGTACCCACTTATTCGTCGCCATCATTTTG TCAAGGCTGTCTTTTTTGAGGGGCCCTAGTAATTTTTCTATCCTTTGAAC AAGTTTCACAGAGTTTACAGAAAAGAAGATGAATATTTTCACCAAGATCG TCGTGCTCATCGTCCTTATGGTCCTTATCGCAGTGGCTGATACGGCAGGT ACGTAAAAGACACTAAATTTTAACCCTTCTTTCAAATTTGGTGAAACGTC GCCAATATGAGACTGAGAATTAGAGACAACCCATAACCGAGGCAATATTC CTTCCTCGTCGTCGTGAAAAGACATCATAGATACACATTTTTAGCGGTAG AATTTTTAGAGGTAGAAGAAAATAGTGTTAGATTCCGTCTTTTTCATTCT GTGAACTTATTTGAATGACATGTTAAGAATGTTACACACCACTAATACGC ACCAAATTATGCTCCATGGCCGGGGGGCCTACTGGCACAGGTTCTGCGAG TAGGTGTTAATCATAAGTGGGACAGACTCAGTCGGTATGTTAGTGTCGTT GTTGTAAACACTGTGGCAGTTAAGGTGCCCCTTTTATGCAATCAGGCCAT AACTAATGGCGTTTATCAACTTAAGTCAAAGATCACGTTGAAAAACAGAA ACGTTTCACCTCGTACGAACCTTAGTATATTTCTTGTATATTCATGTTCT ATGGACTCAATGTTATCTTAACAAATCTCAGAGTTGAATGTTGCCTTTCA CTGTACACCATACGGTCTTTGTACAAGTCATTATACTTCATTAGTTTACT GAGTGAGAACTTTAAGCCCTTGTTGCACATTCAGGACCTTCCCTTGTCCT TGCCCCGACCACATCCAAACCAAGGTCGGCGGTAGCGTGGGGCAGTCTGA CGAGTTTTAGACCACGCCTATATTTCACTACAGCCATGTCAAAACTTTTC ACAGCCATTTTACAATCAGAACATGACTTACTCCCAATCTTTCCCGAATC GCAAGGTCTCGACCACCCCGATTTCTAGCTGCAGACTTCCGATTCCCTCC TGACTGATTCACGAATTAAAATGGACATAAGCGCTGACTTTTAAAAGAGA GTGCACTTTGTTTTAATCTCGTAAACTTACATATTTAACGTTTTGGTGCA AGTGAAGATTTAAAGCACTGTGACCTCTTTGTAAAGTTTGTGTTTGAGCA GGCAAAATGTTTTGGTGCGAGTATTTTTGCCATGTGTATCAGCACGACTT ACTCGTACGATTTGCAGTATGGTTACAAACTTTTGTTTTTAATTGGACGA AAATTGATGCACAGAGCATGTCATCCATATAATCGAATCAGAAGATGTCA TCCATATATCAATATGATTAGGGTGGCGTATGGCACTGAACTATACAGCC TTCAGAATTTTCAGATATATGATAACCTTTCATGTTTGATGTTACGTTCA TCTTTAGGACGGAGACGTAATGGGGGTCACAAGAAGAGAATCCAGGAGAT TCGGAGAGCAAAAGGTCGTAAGAAATGAAACATCTATCCCGTTTTAGTTC ATTCTGAGATTCAACCAAGCATGTAAATTTGAAACAGACGCATATATGCG TTAAACCAAACATACAGTCATGTACACAACTTTCGAGCAATGATCTAAAA TGTTACAGAATATATGTACGGATCTTTGTACTGCTTTTGTATTTCCACTT TGAGGAATCCCCATTTAACAAAGGTATAAGGTCGCGGGAATATTGTTTAG AAAATACAAAGAATGACGTATTTTCGACTAGTCCTTCCGTCCGCACGTTT AAGAATAGACTATTTGATGTAAATTCAATGTTATGTGTAAATGTCTGTAT ACTGTCCATGCTGTTCTTAACATGGGCTATGGGCCTGATACAAAGAATGA AATAGAATTAATAAGATACATTATTGTTATAAAACTGTTAATGTAACAAC ACTCTTCCTCCCAATTAAACTATTTCAGCTTCCGCTGCCCTTCAGAGGGC AATAGAAAGACTGCGTAGCAGGGGGAAACACACTCTGGCTGACAGACTTG AGAGACGCCGGGGTGACATCTTGGGATTGGGTAAGAGTTTGATATAAGTT TTGCAATGGTTACAATACGTTACAAGACATCGCAGTTATTGCTATTGGCC AAGTGCGCATTATATCAACAATACTGGGAGAGTATGCTAACATTATTGTA CTTTCCATCTGAAATATATGCCTCATGTGAAACCTTATTTGTTTAGTAGA TTAGACTTTGCAGTGCTCCTGTTTATTGCTACGCAGTGCGTACACCTACA GCTTTATGGAATATCACTTGGCGATGCCCCTATCAAACCGTTATGAATTG TGATTCGCACGAGGTGCACATGTCCAATAAGGAGGTTCACTATTCTATGC GCGCATGCACTGCGCAATGCATTGTGGGTGAAATGTCAAAGGTGAAGGCC CATAACTTGTAAACACTTTTTGTCTTGACCATTGCATAACAATGTCCATA CGTCTTTTTTTGACATATTGCCTTTAATGCATTTTTCTGCATGTGCGTTC TCCTTATTGGAACCTCCTTATTCTTCTCCTCTCTTCAGACTGCCCGAAAG ACCAGCCTGCCGTTCATTGTCCTGTCAACCCCTGCGATACGGCTGATTGT AGGGCCAACCAGGACGCCAAATGCGAGCCCAACTACTGCGGAGGCTGCCA CGCATTTTTCTACGACGCGGATGGAAACCGCGTGGACTGTGACGGTTAGT TCAAATTTGAATTTGAATCAGTTTCTACGGGTGGGAAGAATAAGCTACTG GATAATGTATCGAGAGAAATAGGCACGCAATTTGTACGTACAACGTTAAC TAGGCTAACCAATCACATTTTCCATATTCTTCGATGAAGGTAAGACATCC AAGTATACTTCGAACACTACATAATGCAAAATAAATCAAGCAACAGGATG CTAAAATTCTGTCATACGTTTCTGATAGCATCCACTAAAATTCATCATAG ACTGACACATACGTTTTCCTACATGACGTTATTCAAAATGGAACTAAGAT AACCAATTAAAGGATGCTATTCTCCCATATGACATACCCCTAGGATGCCC GGATGACCAGCCACTGGTGAACTGCTTTGCTGACCCCTGTACTGTGACCA CCTGCCCCGCCAATCCCGATGCTACATGTGTGTCCAACTACTGTGGCGGC TGCAATGCCGACTTCTTCAACAGAGACGGCGAACCAGTCTGTAAGAATGA TTTCTTTAACTTACGCCAAAAATAGTTACTCAAGCAACTGAATGACATTT TGAAACAGTGCAGACCTCTTTAACCTTGTTTAAGCAGCGTTGTGGACATC AACGTGGACCGGATAAAACTGTTTTGACCTTGATTGCACTAAAAAGGACA CGTAAATTATGGAGCCAAAGACTTCGACATAGGAATCTTAGGGGAAGTAC ACACATCGCTATTGTTGGAGAAATCTGTAGTTATGGTCCTACCAATGATA TGTTAAGATTTAAGAATGAAACAACTTTTCAGTAATTGTGCTGATAAAAA AAATCCATTGGTGACAAATGTGATAAAATACGACCGGAAACAAAATTCAA TGTGGCAGCACCTTGGACACCGATAACAATAGTATATTTTTTTCTGCGTG ATGTTTATTTTTCACTAGTCTTCTCTGTTTATGGTTTACATAGATTGGCT TTTGGTATTTCAGTTGACCAAGGAGTTGACAGCATGTATCTGCCAAGAAT ACTTCATTCAGTAAAATCTACCATGCAACGTTCCTGTAGTAAATTCAACG ACGTGAAACGAACAATAAAATGACGTTGACCTTTGACCAATCAGGTTGTG ATGGCGTGGGACAACCATGTGACACCGGCAGTCCACATGCAACAGAGGAC GACCGCACCTGTCCATGCGGCTTGCTGTGTTTTCCCAACCAGGATGACTT CACCACGGGGACGTGTCAGACCCAGCAGTGGGTGGACGACAACGGAGGAA TGCCTATCTTACCTATTGGTTAAGACAACGAAACGCCATGGAGGTTCTAA CAATGATAGAACTTTCC

Coding sequence (CDS) from alignment at Sc0000000:4227563..4231679+

>BlTCONS00000584 ID=BlTCONS00000584|Name=BlTCONS00000584|organism=Branchiostoma lanceolatum|type=CDS|length=711bp|location=Sequence derived from alignment at Sc0000000:4227563..4231679+ (Branchiostoma lanceolatum)
ATGAATATTTTCACCAAGATCGTCGTGCTCATCGTCCTTATGGTCCTTAT
CGCAGTGGCTGATACGGCAGGACGGAGACGTAATGGGGGTCACAAGAAGA
GAATCCAGGAGATTCGGAGAGCAAAAGCTTCCGCTGCCCTTCAGAGGGCA
ATAGAAAGACTGCGTAGCAGGGGGAAACACACTCTGGCTGACAGACTTGA
GAGACGCCGGGGTGACATCTTGGGATTGGACTGCCCGAAAGACCAGCCTG
CCGTTCATTGTCCTGTCAACCCCTGCGATACGGCTGATTGTAGGGCCAAC
CAGGACGCCAAATGCGAGCCCAACTACTGCGGAGGCTGCCACGCATTTTT
CTACGACGCGGATGGAAACCGCGTGGACTGTGACGGATGCCCGGATGACC
AGCCACTGGTGAACTGCTTTGCTGACCCCTGTACTGTGACCACCTGCCCC
GCCAATCCCGATGCTACATGTGTGTCCAACTACTGTGGCGGCTGCAATGC
CGACTTCTTCAACAGAGACGGCGAACCAGTCTGTTGTGATGGCGTGGGAC
AACCATGTGACACCGGCAGTCCACATGCAACAGAGGACGACCGCACCTGT
CCATGCGGCTTGCTGTGTTTTCCCAACCAGGATGACTTCACCACGGGGAC
GTGTCAGACCCAGCAGTGGGTGGACGACAACGGAGGAATGCCTATCTTAC
CTATTGGTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000584BlTCONS00000584-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000584-exon-Sc0000000-1564993656:4227563..4227810BlTCONS00000584-exon-Sc0000000-1564993656:4227563..4227810Branchiostoma lanceolatumexon
BlTCONS00000584-exon-Sc0000000-1564993656:4229070..4229126BlTCONS00000584-exon-Sc0000000-1564993656:4229070..4229126Branchiostoma lanceolatumexon
BlTCONS00000584-exon-Sc0000000-1564993656:4229591..4229692BlTCONS00000584-exon-Sc0000000-1564993656:4229591..4229692Branchiostoma lanceolatumexon
BlTCONS00000584-exon-Sc0000000-1564993656:4230201..4230356BlTCONS00000584-exon-Sc0000000-1564993656:4230201..4230356Branchiostoma lanceolatumexon
BlTCONS00000584-exon-Sc0000000-1564993656:4230706..4230852BlTCONS00000584-exon-Sc0000000-1564993656:4230706..4230852Branchiostoma lanceolatumexon
BlTCONS00000584-exon-Sc0000000-1564993656:4231457..4231679BlTCONS00000584-exon-Sc0000000-1564993656:4231457..4231679Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:4227563..4231679 +
Properties
Property NameValue
GeneIDBlCUFF000316