BlTCONS00000581 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000581
Unique NameBlTCONS00000581
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:4144137..4151224+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000581 ID=BlTCONS00000581|Name=BlTCONS00000581|organism=Branchiostoma lanceolatum|type=mRNA|length=7088bp|location=Sequence derived from alignment at Sc0000000:4144137..4151224+ (Branchiostoma lanceolatum)
CACCATTTGTATTATTTTGTAAACTTCAAGGAGAACTGGTTTCTGAGGCG TCTTTAAGAAAGTAAGAGAATCTAAAGTTGACAAGGAAAGTGTCACATCT TGCTGGTCTAAAAAAAGGAAGCAAGGTAAGTTCTTCTAATTTCAGAATCT TCCTAGCAATCAACCTCGCGTATCGCTATAAAGGTGTTTCTTTGTTTGAC GGTCGCTGCAGTAGAATACTAGTACATGCGCCCATGTACCTATACTATAG ATATTTTTGCCTGACCAAAAATGTTATCTAGTGTTTGTGAATCACTTCGT TTGTAGACACGTGGTTAGTAACATTTGTAATTTATGCATTTCGAAAACCT GGTTGGAAAACCGTTGCCAACTGCAAGTTGCGCACAAAATTACAATGAAC TCTTTGCGTTACTTGATATGCGCTTTATCTTAGTGGTGACATACAAATTT AGCGAACGCTTGAGAGCGTCTTCGCTACACATGAACGTGTTGTCACAAAT GTATGTTGAAATGATAACTATTTGCGTCGCCTGTGCATTATACTGTTGTT CACTTGGGCCTACATTTGAGGACTGGAGTAAGTAAAGTGCAAGATGTAAC ATGATAATTGAATTAGATTTCATTTCAGAGAGAGACGGCGGCTCTTACAG AATGAGTCGGCAGGCGCCCGTCAGTAGCTCGAGCACGAGCGCCCCCAGCC GAGTCGTGGCGGCACCGCACTACGCCCGCCTGCAGCACGCCAGTGGTCAC ATTCGCCCCAGTATGGGATACTGTGTACCAGGGCCACAGTGGCAGTATGT ACCCAGTAAGTTTTTTGCTATTAAATCTATTTACCTCCATTTTCATAGAG GTATTTTTGGGGTGTTCTGTGTCTATTGTCTGTCTGCAGCACACAAATAC CATGGAAACGCAAACTGAGTTTGTGTTTCCATGGTATTTGTGTTCGGCAT AATCTAAGAATCTCTGGATGGATTGTAATATTTAGAGGATAGGTTTTTCT TGGAGGACAAAAATTAAGGTCAAGTCTGGTGATACACATCTTGTCCTAAA ATGACACCTTAATGCCATGTATAGAAATTAGAATGTCATGGGATAGTTAT ACAGATCTCGTGCGTAAGTCGATAAAAAAACCTCACTAGTATTTCGGTTC CACAATGTTCTATCTTTGCGAGGCTCACTACATTGAGCAGGATACACGAC TGGTGACCTCTCTCGACCCACATAGCGACAGAATGATCAATAAGATGATA GCGGTCGCTAAAACAGGAAGAGGAAGAGGCATTGTAGCTGGTTCTTTGCT GACTTTCATCCTCTTGAATCTTCATCGGCGCAAATATTCTTCTGTCCACA GATCACCCGTCCGTCTATCCCAGCGTCCAGCCCTACGCACAGCCATACGT GGTACAGCACCCCCTTGCCCACCCTCACCATCATCCTCACCCTAACCCCC ATGCAGAGCCTTATGTGGTCCGTCAGCCGATTTTCCAGCCTCACTACCAC CCCTCAGTGATGCCTCAGGTAACTCTTTCACAGTTTCATCAGGATAATGT ACATTGTGACTGAATTCACAAATAATAAGGCAGTTCAACGCTTGAAGTGT GCATGAGCAACAAGCCCATTTATAGATTCGAGTGCGCATGTGCAGTGTCA AAGGTGAAGGCCGCTGGCTTGTAAACAGTTCTCGTATCAAAATTGTCTCA TTTTGCATAACACTGCCCAGACGGGTATTGCTTAGGTCTCAGGGACCTTC ACCGTTGACACTGCACATGCGTACTCGAATCTACGAATGGGCTTATATCA TGCATCTGGGCTATCATTGTCTGTTTCGAATTTTAGTGTGACGTTTTATA TCTTAGCTGCTACTGGATTCTGTAGCCACTAGAAAAGTTTTGCAATGTAG GAAGTGGTAGGAAGAAGGCTGATAGAGTTTTCGTTAACCAAAGCAAAAAT GAAATACAGTTTTTCGAGAAACTTGACCTTTCTGGATACGATTCTGAGTA GTTCCAGCGGTTCTCTTCTGTGTAGGGATGTGTCATTGCTGCTCCTACGT ACGTAAAACCGACAACGGCAGTACACCGACCCAGCCAACAGAGCATCCAG GCTGTAGCCTCATCTACCACGGAAGTAGCAGACGTCTCCGGTAAACAGAA GACCATGGCGTCCCCCAAGGTCGACGACGACCCCGCGGTTATAAAGATCC TGCGACGGGAAGAGGCGAAACCGCCACAGGAGGCCAAGACGAGTGATCCC GCTCTGCCTCCACAGATAATCATTACAGACAAGGAGCCCTTACGGTAAGT ATAAGTTAGTTCACGGTTTTAAATGCGCAAGTGCATTGTGGGTAATATGT CAAGATTGGTTATCCCTGGCCATTCTTTATGTGTTGCCAGGGCCTTCAAC TTTGACATATTACCCACTATCCACCACACTGGGCATGCGCACTTCAAACC GTTAACAAGCTTATTTAGCTTATTTAGAACAAAAAAAGGGAAAATAAAGC ACTGCAGGTCGAATTTTTAGATCTGCTTTGCGCAGTCCTTCATTTTTTTT TTTTTTTTTTTATTAAACAACAGAAGAATAAACAGGACACAGAGGTGATG TACTCTAGCTGAAGCTAATATTAAACATCACCTCTGGAAAAAAANTTTTT ATTTTTTTTTTTTTTTTATTAAACAACAGAAGAATATACAGGACACAGAG GTGATGTACTCTAGCTGAAGCTAATATTAAACATCACCTCTGGAAAAAAA AATACAAGTTACATAGACAAGTACAATAGCAATGAGAAACAGCAATTGGG TCGTCCAATACAAACAAGCTAACAAACAAACAAACAATGAATATATCAAT ATACCTGAACTAAGTTTTAAAACGTCTGCTTGTCAAAATATAGTGCTGAG TCAAGCCTAAAATGTTACAGTTGAAATCATACGAAACAAAGGATGAACCT CTTAATAATAAATAAATGAAGGCTTGATCAGACAAAGTATCAATATCAAG AATAGGGGCTAAAAGGTTCCGTAGGTTGCCCAGAAGGTTGAGTCTTTGTT GATTGTATATAGGGCAGTACAAAAGATAATGAGCAACGCTTTCGCTTCGA CATCCGCAAGTGCAGGCTGGACTTGTTGCTAAGTTGCGTGTAAATAAACT TAGGTTAAGACTGCACGTGCCGGTGCGAAGGCGTGTGAGGAGGGCGCAAG TGTACCGGGGGCCATGACTAAAATGTGAATAGAAAGAGGGACGTACTAAT TTCACTAGATGTTTTTTAAACAACGAAAGATTTAAGGATCGAACAGCTAT ACCAAGACCGTTCCAATGATGCGTTGCATAAGGAATAAAAGACTTTTGAT ATCGAGTTGTAGAGCAGAGCGGTATCCTTAGATTAAGTTTGTTGCGAAGA TTATAAGAAGTAGAAATGGAGACTTCAGGAGGGATCAAATCCTTAAGATA CTGGCGAGTATGGCCATGGACAATTTTGTAGAACATGATCAGAGAGTGAA CGTGACGACGATCCGAAAGTTTTTCCCAACCTAATTCAGAAAGTAGCGAA GAATACGAAGACCCTCTTACAGCCCCTGAGACTGCAAGCGCGCATTCGTA TTGGACACGTTCTAATCGCTGGGAATCATATAAAGTACATCCATGCCAAA TAATGTCAGCATATTCAAGGAGAGGACGAATAAAGGAGTCCTTCATTGCA AATGCCAAGCTAGTTTAGAAATTTGCACTCACTATGACGTAAGTATTGCC GGCCATGTTGGATGGTTTAAAGTTGGAAGTATCCAGTTTACGTTGAATTG TGTAAATATGTAATCACAGGCACGTAATTATGACAAAAAATGCATATTTA TATGTCGAAGCCTTCCAAGCTAGTTCTGCAAACAGGTTGTGACGCAGCGC ATAAATAATCTGTTAGTTTTTGTGTGTGTAACTATATAGTTTCTTGTTCC TACAGCTTGGATGACGCCTCCAAACGCACATCGACCCCTTCAATCATATC AGACGACACAGGATTTGACTCAGCTAGTCAGAAGACGTCCGAAAGTGGGG AGGACAGAAACGGAGACTACCTGGACATCGTCCACAACCTCATAGAGAAG ATTGAACTCGACCAGGGGGCAAGGAAGGCACAAGGCAGCGCAGAATACGA CGCCGAGGGTGTACCTATCTCCATCGATAACTCCTACTCTAATATACAGT TCTCACCGAATAAAGCTCCGAGTCTCTTGGGACGCGCGTTCCGTCTGTCG GGGCGCTGCAAGCCCAAGAAAAAGTCTCCCGTCAAACGGACCAAGGGATT CGGTGCTCCTCCGAAAACGACCGACGCCTCGACGAAGAATCCCGACAGCG ACGCGAAGCCTTCCGAGGACGACAGTTGGGTTGAGGGCGGTGACAACCCC GTCTTGGCGTATCAGATTACAGAACCGACGTTCGACTTCGACAGGGCGAG GCAGGAAGCGGAAAGGCGGGCAGTAGAACGTGAGATGGCGGAGAACGACG AGGCGGCGCCTTACCATGGGAAGCGATGGAGGAGGAAATCCAGGCAGCCA AACAGACAGCCACCTATGTATAAGGTAAGGACAGATTTCGTGCTGAAATC AGCTTGTAACGTACGCGTAAGTCTGTCGTGGTGTATTTATTAATGCTGAC AATATGTGGCATCAAATTGGTTGGGTGATGCAAATCAAATCTTAACATGC GATGTGCCAGGTACTAAACCTCATTTGTTCTAAATTGTTAAGAAGCAGCT TATGCAGTAGTCCTGTAAATCGCTAGGTGGTGCACTTGCAGAAAGGGACC TCACGTGATGACACTTTTCCCCATACATTTCCAGGCCTGGCAAGCTTTCA AGAAGCCTTTCAAGAACAGGAACCAGAGCCAGAGGGGCGAGGGCGATGGT TACTATGGCAACCAAAATGGCAACAAAAACAGTAGCGGTTTTTGGCAGCG GGGCCGAACCCGACGGCGGCACAACACCTTCGGATCACAGGTGAGTGAGA CAAGTTACCGCGAACACGAGGCGAACAGCAGAAATGTACCAAACGTAATT TTGCGGTCATGAATACCGGTATCATACGATCAAATATCTTTACTCTGCCA CATAACGTTTGCTTATATAAATCTATCTAAGGGTAATGTGACATTCATGC CTTACAATATGCAGCCCCTTGTACGAGATATCTTAATATCTCAACATCTT NACGAGACATTTTAATACCTTTAATGCGAGCTGGGCAACTAAGGGTGTGT TCTGTCTTTGACAGAGACACCTGACGGACCAACTCAAACTGCACCAAGAC GGGCGTGTCCGAGGAACCTATTCAATCGACCCTCGCGGCGCATGCGTCAA CTTGAACTTAAACATCTCAATCCCATACAAGAAAAAGTCGACTGAGGTAG GAACGGGATCGGACCCTTTATGACGAGATAAATCGACCACAGCGCAAAAT TACATTCTAAGGAGTTGAAAAGATTGAAAGATTGTCAGCAATGTTCTGTC ATAAACTTTCTTTGTCTATCTAGCGAATAGAAGAAGAAGAAAAAACACAC CAGGCTGTTATTTGTGAGTACACGTACAGAGGGGCTGCAGGCATGATGCT TACTAGTCTGGCATATGGTTAAAATCCGATTCAGTCAGAACTAGCTACTG TATAAGCTAGTTCACAGCTTGTAGTGCGTATGCCCAGTGTCATGAATTCT GGTTAGATGCTAGAGGTTGAAAGGGACAAGGGCCTTAAACTCTGACATTG AACCACAATGCATCACACCGTGTTAAGTTGCTTATTCCGTTTTGTATTCT AACGATCATCATTTAAATAGCTTATCACTCTTATTTCACTTCTTTTACTT TTCTCTGTTCTAACATTGCTTTTAAAACCATTTTAAAGGCTGACCTTGAC GAGTCCCGAGCAACGATATTCGACGACGACGAAGCCGAGCCCGAGGCGCC CCCGATGATGCACGAGAACATGCCGAGCGCCAAACGACGCTCCCGACGCA CGACCTCCGAGCCGAGGCGACGTAAAAACTCGTATCTCCGACCAAACGGT TGCGAAGGTGCCAGACAGCCCGGTAAGAACCATAATCAGCCATTAAAACA ACGCCCTACTTTCTTAATGTTAGCTGGCTAGTATACATATCTTGCCACTG GCAATGGAGATAATCAAAATATCAAAACACAGCTATGTTATACATACTGT CGCTAATAGCGGTTTGAGAGCCATGTAAAGCAATGCTATGATAACGGTTA ATCTAAATGCTATGAAATTTCTAAAAAGAAATGTAAAAGTCAGCCGGTTC CTTACACCACTGTTCCTGTTCCTGAAGCTGTCTTGATTTTACTGATGCCC GTCGGGATAATTGATTGACGTTTTATTTCAGGACACGATGACTGGGATGA GTGGGTTCACGCAGGAGGGATGGTGTCAGGAAAGTGGGGAGTCGTGCCGA GGCGAGGTAAGACAACAAACCTTAACTTGACCCTGGTAGTCCAATGAGCT TAAAATGATATCAAACCTCATTGAATAGACTGATCATAACTGTCCATCAC AGTTATTAGTTCAACCAATGATAGAATGGCAATTAGCTGTTCGACTTTTG AGAGAGTGGCTACGTGTCCGTCAAATACATGCACTTGAAATGTGTGTGGT TTTGCAATACGGACTTTTCTTGTAATTTGGTTAGAAAGCATGTTTATCAA GTTTTTCCTATCTATCTTACGGAAATGTCAAGTATAACATAAGATTTCAT TTCGTAAATCACATTTCTTATCACAGATATAAGCTCCTCTCATTTGTTGT TCCTGCTATTTTCATGTAGAGCGCCTGCGCAGGACAAGCAGCCGCAATGA CTTGTGGGTCGATGACAACCCCTCCGCCTATGACGTAGCCTGTGTGGGTG CACGTCAGGACGCACTGCGCAAGCGTCAGGCAACAGGCTCATGTACACGT CAGCGTCTGGGCTCGAATCATGCATAAATTATCATAAACAGACCTAGACG ACATGGATGAAATGTGACCTACGCATGCGCAGTTGTGAAAAGAATGATAT CACAGGCGTGTATTTAATGTATCTTAATGAATAATGAT

Coding sequence (CDS) from alignment at Sc0000000:4144137..4151224+

>BlTCONS00000581 ID=BlTCONS00000581|Name=BlTCONS00000581|organism=Branchiostoma lanceolatum|type=CDS|length=1782bp|location=Sequence derived from alignment at Sc0000000:4144137..4151224+ (Branchiostoma lanceolatum)
ATGAGTCGGCAGGCGCCCGTCAGTAGCTCGAGCACGAGCGCCCCCAGCCG
AGTCGTGGCGGCACCGCACTACGCCCGCCTGCAGCACGCCAGTGGTCACA
TTCGCCCCAGTATGGGATACTGTGTACCAGGGCCACAGTGGCAGTATGTA
CCCAATCACCCGTCCGTCTATCCCAGCGTCCAGCCCTACGCACAGCCATA
CGTGGTACAGCACCCCCTTGCCCACCCTCACCATCATCCTCACCCTAACC
CCCATGCAGAGCCTTATGTGGTCCGTCAGCCGATTTTCCAGCCTCACTAC
CACCCCTCAGTGATGCCTCAGGGATGTGTCATTGCTGCTCCTACGTACGT
AAAACCGACAACGGCAGTACACCGACCCAGCCAACAGAGCATCCAGGCTG
TAGCCTCATCTACCACGGAAGTAGCAGACGTCTCCGGTAAACAGAAGACC
ATGGCGTCCCCCAAGGTCGACGACGACCCCGCGGTTATAAAGATCCTGCG
ACGGGAAGAGGCGAAACCGCCACAGGAGGCCAAGACGAGTGATCCCGCTC
TGCCTCCACAGATAATCATTACAGACAAGGAGCCCTTACGCTTGGATGAC
GCCTCCAAACGCACATCGACCCCTTCAATCATATCAGACGACACAGGATT
TGACTCAGCTAGTCAGAAGACGTCCGAAAGTGGGGAGGACAGAAACGGAG
ACTACCTGGACATCGTCCACAACCTCATAGAGAAGATTGAACTCGACCAG
GGGGCAAGGAAGGCACAAGGCAGCGCAGAATACGACGCCGAGGGTGTACC
TATCTCCATCGATAACTCCTACTCTAATATACAGTTCTCACCGAATAAAG
CTCCGAGTCTCTTGGGACGCGCGTTCCGTCTGTCGGGGCGCTGCAAGCCC
AAGAAAAAGTCTCCCGTCAAACGGACCAAGGGATTCGGTGCTCCTCCGAA
AACGACCGACGCCTCGACGAAGAATCCCGACAGCGACGCGAAGCCTTCCG
AGGACGACAGTTGGGTTGAGGGCGGTGACAACCCCGTCTTGGCGTATCAG
ATTACAGAACCGACGTTCGACTTCGACAGGGCGAGGCAGGAAGCGGAAAG
GCGGGCAGTAGAACGTGAGATGGCGGAGAACGACGAGGCGGCGCCTTACC
ATGGGAAGCGATGGAGGAGGAAATCCAGGCAGCCAAACAGACAGCCACCT
ATGTATAAGGCCTGGCAAGCTTTCAAGAAGCCTTTCAAGAACAGGAACCA
GAGCCAGAGGGGCGAGGGCGATGGTTACTATGGCAACCAAAATGGCAACA
AAAACAGTAGCGGTTTTTGGCAGCGGGGCCGAACCCGACGGCGGCACAAC
ACCTTCGGATCACAGGCTGACCTTGACGAGTCCCGAGCAACGATATTCGA
CGACGACGAAGCCGAGCCCGAGGCGCCCCCGATGATGCACGAGAACATGC
CGAGCGCCAAACGACGCTCCCGACGCACGACCTCCGAGCCGAGGCGACGT
AAAAACTCGTATCTCCGACCAAACGGTTGCGAAGGTGCCAGACAGCCCGG
ACACGATGACTGGGATGAGTGGGTTCACGCAGGAGGGATGGTGTCAGGAA
AGTGGGGAGTCGTGCCGAGGCGAGAGCGCCTGCGCAGGACAAGCAGCCGC
AATGACTTGTGGGTCGATGACAACCCCTCCGCCTATGACGTAGCCTGTGT
GGGTGCACGTCAGGACGCACTGCGCAAGCGTCAGGCAACAGGCTCATGTA
CACGTCAGCGTCTGGGCTCGAATCATGCATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000581BlTCONS00000581-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000581-exon-Sc0000000-1564993656:4144137..4144261BlTCONS00000581-exon-Sc0000000-1564993656:4144137..4144261Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4144767..4144941BlTCONS00000581-exon-Sc0000000-1564993656:4144767..4144941Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4145488..4145654BlTCONS00000581-exon-Sc0000000-1564993656:4145488..4145654Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4146162..4146430BlTCONS00000581-exon-Sc0000000-1564993656:4146162..4146430Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4148092..4148710BlTCONS00000581-exon-Sc0000000-1564993656:4148092..4148710Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4148971..4149126BlTCONS00000581-exon-Sc0000000-1564993656:4148971..4149126Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4150025..4150208BlTCONS00000581-exon-Sc0000000-1564993656:4150025..4150208Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4150518..4150592BlTCONS00000581-exon-Sc0000000-1564993656:4150518..4150592Branchiostoma lanceolatumexon
BlTCONS00000581-exon-Sc0000000-1564993656:4150956..4151224BlTCONS00000581-exon-Sc0000000-1564993656:4150956..4151224Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:4144137..4151224 +
Properties
Property NameValue
GeneIDBlCUFF000313