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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000000:4144059..4151224+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00000580 ID=BlTCONS00000580|Name=BlTCONS00000580|organism=Branchiostoma lanceolatum|type=mRNA|length=7166bp|location=Sequence derived from alignment at Sc0000000:4144059..4151224+ (Branchiostoma lanceolatum)
GAAGACAGGAGTGACACGCCATTTTGACTGCGACACTGCCAGACTTTGAA
GTTTTCTTCGCACTTATTCTTTTGTTCGCACCATTTGTATTATTTTGTAA
ACTTCAAGGAGAACTGGTTTCTGAGGCGTCTTTAAGAAAGTAAGAGAATC
TAAAGTTGACAAGGAAAGTGTCACATCTTGCTGGTCTAAAAAAAGGAAGC
AAGGTAAGTTCTTCTAATTTCAGAATCTTCCTAGCAATCAACCTCGCGTA
TCGCTATAAAGGTGTTTCTTTGTTTGACGGTCGCTGCAGTAGAATACTAG
TACATGCGCCCATGTACCTATACTATAGATATTTTTGCCTGACCAAAAAT
GTTATCTAGTGTTTGTGAATCACTTCGTTTGTAGACACGTGGTTAGTAAC
ATTTGTAATTTATGCATTTCGAAAACCTGGTTGGAAAACCGTTGCCAACT
GCAAGTTGCGCACAAAATTACAATGAACTCTTTGCGTTACTTGATATGCG
CTTTATCTTAGTGGTGACATACAAATTTAGCGAACGCTTGAGAGCGTCTT
CGCTACACATGAACGTGTTGTCACAAATGTATGTTGAAATGATAACTATT
TGCGTCGCCTGTGCATTATACTGTTGTTCACTTGGGCCTACATTTGAGGA
CTGGAGTAAGTAAAGTGCAAGATGTAACATGATAATTGAATTAGATTTCA
TTTCAGAGAGAGACGGCGGCTCTTACAGAATGAGTCGGCAGGCGCCCGTC
AGTAGCTCGAGCACGAGCGCCCCCAGCCGAGTCGTGGCGGCACCGCACTA
CGCCCGCCTGCAGCACGCCAGTGGTCACATTCGCCCCAGTATGGGATACT
GTGTACCAGGGCCACAGTGGCAGTATGTACCCAGTAAGTTTTTTGCTATT
AAATCTATTTACCTCCATTTTCATAGAGGTATTTTTGGGGTGTTCTGTGT
CTATTGTCTGTCTGCAGCACACAAATACCATGGAAACGCAAACTGAGTTT
GTGTTTCCATGGTATTTGTGTTCGGCATAATCTAAGAATCTCTGGATGGA
TTGTAATATTTAGAGGATAGGTTTTTCTTGGAGGACAAAAATTAAGGTCA
AGTCTGGTGATACACATCTTGTCCTAAAATGACACCTTAATGCCATGTAT
AGAAATTAGAATGTCATGGGATAGTTATACAGATCTCGTGCGTAAGTCGA
TAAAAAAACCTCACTAGTATTTCGGTTCCACAATGTTCTATCTTTGCGAG
GCTCACTACATTGAGCAGGATACACGACTGGTGACCTCTCTCGACCCACA
TAGCGACAGAATGATCAATAAGATGATAGCGGTCGCTAAAACAGGAAGAG
GAAGAGGCATTGTAGCTGGTTCTTTGCTGACTTTCATCCTCTTGAATCTT
CATCGGCGCAAATATTCTTCTGTCCACAGATCACCCGTCCGTCTATCCCA
GCGTCCAGCCCTACGCACAGCCATACGTGGTACAGCACCCCCTTGCCCAC
CCTCACCATCATCCTCACCCTAACCCCCATGCAGAGCCTTATGTGGTCCG
TCAGCCGATTTTCCAGCCTCACTACCACCCCTCAGTGATGCCTCAGGTAA
CTCTTTCACAGTTTCATCAGGATAATGTACATTGTGACTGAATTCACAAA
TAATAAGGCAGTTCAACGCTTGAAGTGTGCATGAGCAACAAGCCCATTTA
TAGATTCGAGTGCGCATGTGCAGTGTCAAAGGTGAAGGCCGCTGGCTTGT
AAACAGTTCTCGTATCAAAATTGTCTCATTTTGCATAACACTGCCCAGAC
GGGTATTGCTTAGGTCTCAGGGACCTTCACCGTTGACACTGCACATGCGT
ACTCGAATCTACGAATGGGCTTATATCATGCATCTGGGCTATCATTGTCT
GTTTCGAATTTTAGTGTGACGTTTTATATCTTAGCTGCTACTGGATTCTG
TAGCCACTAGAAAAGTTTTGCAATGTAGGAAGTGGTAGGAAGAAGGCTGA
TAGAGTTTTCGTTAACCAAAGCAAAAATGAAATACAGTTTTTCGAGAAAC
TTGACCTTTCTGGATACGATTCTGAGTAGTTCCAGCGGTTCTCTTCTGTG
TAGGGATGTGTCATTGCTGCTCCTACGTACGTAAAACCGACAACGGCAGT
ACACCGACCCAGCCAACAGAGCATCCAGGCTGTAGCCTCATCTACCACGG
AAGTAGCAGACGTCTCCGGTAAACAGAAGACCATGGCGTCCCCCAAGGTC
GACGACGACCCCGCGGTTATAAAGATCCTGCGACGGGAAGAGGCGAAACC
GCCACAGGAGGCCAAGACGAGTGATCCCGCTCTGCCTCCACAGATAATCA
TTACAGACAAGGAGCCCTTACGGTAAGTATAAGTTAGTTCACGGTTTTAA
ATGCGCAAGTGCATTGTGGGTAATATGTCAAGATTGGTTATCCCTGGCCA
TTCTTTATGTGTTGCCAGGGCCTTCAACTTTGACATATTACCCACTATCC
ACCACACTGGGCATGCGCACTTCAAACCGTTAACAAGCTTATTTAGCTTA
TTTAGAACAAAAAAAGGGAAAATAAAGCACTGCAGGTCGAATTTTTAGAT
CTGCTTTGCGCAGTCCTTCATTTTTTTTTTTTTTTTTTTATTAAACAACA
GAAGAATAAACAGGACACAGAGGTGATGTACTCTAGCTGAAGCTAATATT
AAACATCACCTCTGGAAAAAAANTTTTTATTTTTTTTTTTTTTTTATTAA
ACAACAGAAGAATATACAGGACACAGAGGTGATGTACTCTAGCTGAAGCT
AATATTAAACATCACCTCTGGAAAAAAAAATACAAGTTACATAGACAAGT
ACAATAGCAATGAGAAACAGCAATTGGGTCGTCCAATACAAACAAGCTAA
CAAACAAACAAACAATGAATATATCAATATACCTGAACTAAGTTTTAAAA
CGTCTGCTTGTCAAAATATAGTGCTGAGTCAAGCCTAAAATGTTACAGTT
GAAATCATACGAAACAAAGGATGAACCTCTTAATAATAAATAAATGAAGG
CTTGATCAGACAAAGTATCAATATCAAGAATAGGGGCTAAAAGGTTCCGT
AGGTTGCCCAGAAGGTTGAGTCTTTGTTGATTGTATATAGGGCAGTACAA
AAGATAATGAGCAACGCTTTCGCTTCGACATCCGCAAGTGCAGGCTGGAC
TTGTTGCTAAGTTGCGTGTAAATAAACTTAGGTTAAGACTGCACGTGCCG
GTGCGAAGGCGTGTGAGGAGGGCGCAAGTGTACCGGGGGCCATGACTAAA
ATGTGAATAGAAAGAGGGACGTACTAATTTCACTAGATGTTTTTTAAACA
ACGAAAGATTTAAGGATCGAACAGCTATACCAAGACCGTTCCAATGATGC
GTTGCATAAGGAATAAAAGACTTTTGATATCGAGTTGTAGAGCAGAGCGG
TATCCTTAGATTAAGTTTGTTGCGAAGATTATAAGAAGTAGAAATGGAGA
CTTCAGGAGGGATCAAATCCTTAAGATACTGGCGAGTATGGCCATGGACA
ATTTTGTAGAACATGATCAGAGAGTGAACGTGACGACGATCCGAAAGTTT
TTCCCAACCTAATTCAGAAAGTAGCGAAGAATACGAAGACCCTCTTACAG
CCCCTGAGACTGCAAGCGCGCATTCGTATTGGACACGTTCTAATCGCTGG
GAATCATATAAAGTACATCCATGCCAAATAATGTCAGCATATTCAAGGAG
AGGACGAATAAAGGAGTCCTTCATTGCAAATGCCAAGCTAGTTTAGAAAT
TTGCACTCACTATGACGTAAGTATTGCCGGCCATGTTGGATGGTTTAAAG
TTGGAAGTATCCAGTTTACGTTGAATTGTGTAAATATGTAATCACAGGCA
CGTAATTATGACAAAAAATGCATATTTATATGTCGAAGCCTTCCAAGCTA
GTTCTGCAAACAGGTTGTGACGCAGCGCATAAATAATCTGTTAGTTTTTG
TGTGTGTAACTATATAGTTTCTTGTTCCTACAGCTTGGATGACGCCTCCA
AACGCACATCGACCCCTTCAATCATATCAGACGACACAGGATTTGACTCA
GCTAGTCAGAAGACGTCCGAAAGTGGGGAGGACAGAAACGGAGACTACCT
GGACATCGTCCACAACCTCATAGAGAAGATTGAACTCGACCAGGGGGCAA
GGAAGGCACAAGGCAGCGCAGAATACGACGCCGAGGGTGTACCTATCTCC
ATCGATAACTCCTACTCTAATATACAGTTCTCACCGAATAAAGCTCCGAG
TCTCTTGGGACGCGCGTTCCGTCTGTCGGGGCGCTGCAAGCCCAAGAAAA
AGTCTCCCGTCAAACGGACCAAGGGATTCGGTGCTCCTCCGAAAACGACC
GACGCCTCGACGAAGAATCCCGACAGCGACGCGAAGCCTTCCGAGGACGA
CAGTTGGGTTGAGGGCGGTGACAACCCCGTCTTGGCGTATCAGATTACAG
AACCGACGTTCGACTTCGACAGGGCGAGGCAGGAAGCGGAAAGGCGGGCA
GTAGAACGTGAGATGGCGGAGAACGACGAGGCGGCGCCTTACCATGGGAA
GCGATGGAGGAGGAAATCCAGGCAGCCAAACAGACAGCCACCTATGTATA
AGGTAAGGACAGATTTCGTGCTGAAATCAGCTTGTAACGTACGCGTAAGT
CTGTCGTGGTGTATTTATTAATGCTGACAATATGTGGCATCAAATTGGTT
GGGTGATGCAAATCAAATCTTAACATGCGATGTGCCAGGTACTAAACCTC
ATTTGTTCTAAATTGTTAAGAAGCAGCTTATGCAGTAGTCCTGTAAATCG
CTAGGTGGTGCACTTGCAGAAAGGGACCTCACGTGATGACACTTTTCCCC
ATACATTTCCAGGCCTGGCAAGCTTTCAAGAAGCCTTTCAAGAACAGGAA
CCAGAGCCAGAGGGGCGAGGGCGATGGTTACTATGGCAACCAAAATGGCA
ACAAAAACAGTAGCGGTTTTTGGCAGCGGGGCCGAACCCGACGGCGGCAC
AACACCTTCGGATCACAGGTGAGTGAGACAAGTTACCGCGAACACGAGGC
GAACAGCAGAAATGTACCAAACGTAATTTTGCGGTCATGAATACCGGTAT
CATACGATCAAATATCTTTACTCTGCCACATAACGTTTGCTTATATAAAT
CTATCTAAGGGTAATGTGACATTCATGCCTTACAATATGCAGCCCCTTGT
ACGAGATATCTTAATATCTCAACATCTTNACGAGACATTTTAATACCTTT
AATGCGAGCTGGGCAACTAAGGGTGTGTTCTGTCTTTGACAGAGACACCT
GACGGACCAACTCAAACTGCACCAAGACGGGCGTGTCCGAGGAACCTATT
CAATCGACCCTCGCGGCGCATGCGTCAACTTGAACTTAAACATCTCAATC
CCATACAAGAAAAAGTCGACTGAGGTAGGAACGGGATCGGACCCTTTATG
ACGAGATAAATCGACCACAGCGCAAAATTACATTCTAAGGAGTTGAAAAG
ATTGAAAGATTGTCAGCAATGTTCTGTCATAAACTTTCTTTGTCTATCTA
GCGAATAGAAGAAGAAGAAAAAACACACCAGGCTGTTATTTGTGAGTACA
CGTACAGAGGGGCTGCAGGCATGATGCTTACTAGTCTGGCATATGGTTAA
AATCCGATTCAGTCAGAACTAGCTACTGTATAAGCTAGTTCACAGCTTGT
AGTGCGTATGCCCAGTGTCATGAATTCTGGTTAGATGCTAGAGGTTGAAA
GGGACAAGGGCCTTAAACTCTGACATTGAACCACAATGCATCACACCGTG
TTAAGTTGCTTATTCCGTTTTGTATTCTAACGATCATCATTTAAATAGCT
TATCACTCTTATTTCACTTCTTTTACTTTTCTCTGTTCTAACATTGCTTT
TAAAACCATTTTAAAGGCTGACCTTGACGAGTCCCGAGCAACGATATTCG
ACGACGACGAAGCCGAGCCCGAGGCGCCCCCGATGATGCACGAGAACATG
CCGAGCGCCAAACGACGCTCCCGACGCACGACCTCCGAGCCGAGGCGACG
TAAAAACTCGTATCTCCGACCAAACGGTTGCGAAGGTGCCAGACAGCCCG
GTAAGAACCATAATCAGCCATTAAAACAACGCCCTACTTTCTTAATGTTA
GCTGGCTAGTATACATATCTTGCCACTGGCAATGGAGATAATCAAAATAT
CAAAACACAGCTATGTTATACATACTGTCGCTAATAGCGGTTTGAGAGCC
ATGTAAAGCAATGCTATGATAACGGTTAATCTAAATGCTATGAAATTTCT
AAAAAGAAATGTAAAAGTCAGCCGGTTCCTTACACCACTGTTCCTGTTCC
TGAAGCTGTCTTGATTTTACTGATGCCCGTCGGGATAATTGATTGACGTT
TTATTTCAGGACACGATGACTGGGATGAGTGGGTTCACGCAGGAGGGATG
GTGTCAGGAAAGTGGGGAGTCGTGCCGAGGCGAGGTAAGACAACAAACCT
TAACTTGACCCTGGTAGTCCAATGAGCTTAAAATGATATCAAACCTCATT
GAATAGACTGATCATAACTGTCCATCACAGTTATTAGTTCAACCAATGAT
AGAATGGCAATTAGCTGTTCGACTTTTGAGAGAGTGGCTACGTGTCCGTC
AAATACATGCACTTGAAATGTGTGTGGTTTTGCAATACGGACTTTTCTTG
TAATTTGGTTAGAAAGCATGTTTATCAAGTTTTTCCTATCTATCTTACGG
AAATGTCAAGTATAACATAAGATTTCATTTCGTAAATCACATTTCTTATC
ACAGATATAAGCTCCTCTCATTTGTTGTTCCTGCTATTTTCATGTAGAGC
GCCTGCGCAGGACAAGCAGCCGCAATGACTTGTGGGTCGATGACAACCCC
TCCGCCTATGACGTAGCCTGTGTGGGTGCACGTCAGGACGCACTGCGCAA
GCGTCAGGCAACAGGCTCATGTACACGTCAGCGTCTGGGCTCGAATCATG
CATAAATTATCATAAACAGACCTAGACGACATGGATGAAATGTGACCTAC
GCATGCGCAGTTGTGAAAAGAATGATATCACAGGCGTGTATTTAATGTAT
CTTAATGAATAATGAT Coding sequence (CDS) from alignment at Sc0000000:4144059..4151224+ >BlTCONS00000580 ID=BlTCONS00000580|Name=BlTCONS00000580|organism=Branchiostoma lanceolatum|type=CDS|length=1782bp|location=Sequence derived from alignment at Sc0000000:4144059..4151224+ (Branchiostoma lanceolatum)
ATGAGTCGGCAGGCGCCCGTCAGTAGCTCGAGCACGAGCGCCCCCAGCCG
AGTCGTGGCGGCACCGCACTACGCCCGCCTGCAGCACGCCAGTGGTCACA
TTCGCCCCAGTATGGGATACTGTGTACCAGGGCCACAGTGGCAGTATGTA
CCCAATCACCCGTCCGTCTATCCCAGCGTCCAGCCCTACGCACAGCCATA
CGTGGTACAGCACCCCCTTGCCCACCCTCACCATCATCCTCACCCTAACC
CCCATGCAGAGCCTTATGTGGTCCGTCAGCCGATTTTCCAGCCTCACTAC
CACCCCTCAGTGATGCCTCAGGGATGTGTCATTGCTGCTCCTACGTACGT
AAAACCGACAACGGCAGTACACCGACCCAGCCAACAGAGCATCCAGGCTG
TAGCCTCATCTACCACGGAAGTAGCAGACGTCTCCGGTAAACAGAAGACC
ATGGCGTCCCCCAAGGTCGACGACGACCCCGCGGTTATAAAGATCCTGCG
ACGGGAAGAGGCGAAACCGCCACAGGAGGCCAAGACGAGTGATCCCGCTC
TGCCTCCACAGATAATCATTACAGACAAGGAGCCCTTACGCTTGGATGAC
GCCTCCAAACGCACATCGACCCCTTCAATCATATCAGACGACACAGGATT
TGACTCAGCTAGTCAGAAGACGTCCGAAAGTGGGGAGGACAGAAACGGAG
ACTACCTGGACATCGTCCACAACCTCATAGAGAAGATTGAACTCGACCAG
GGGGCAAGGAAGGCACAAGGCAGCGCAGAATACGACGCCGAGGGTGTACC
TATCTCCATCGATAACTCCTACTCTAATATACAGTTCTCACCGAATAAAG
CTCCGAGTCTCTTGGGACGCGCGTTCCGTCTGTCGGGGCGCTGCAAGCCC
AAGAAAAAGTCTCCCGTCAAACGGACCAAGGGATTCGGTGCTCCTCCGAA
AACGACCGACGCCTCGACGAAGAATCCCGACAGCGACGCGAAGCCTTCCG
AGGACGACAGTTGGGTTGAGGGCGGTGACAACCCCGTCTTGGCGTATCAG
ATTACAGAACCGACGTTCGACTTCGACAGGGCGAGGCAGGAAGCGGAAAG
GCGGGCAGTAGAACGTGAGATGGCGGAGAACGACGAGGCGGCGCCTTACC
ATGGGAAGCGATGGAGGAGGAAATCCAGGCAGCCAAACAGACAGCCACCT
ATGTATAAGGCCTGGCAAGCTTTCAAGAAGCCTTTCAAGAACAGGAACCA
GAGCCAGAGGGGCGAGGGCGATGGTTACTATGGCAACCAAAATGGCAACA
AAAACAGTAGCGGTTTTTGGCAGCGGGGCCGAACCCGACGGCGGCACAAC
ACCTTCGGATCACAGGCTGACCTTGACGAGTCCCGAGCAACGATATTCGA
CGACGACGAAGCCGAGCCCGAGGCGCCCCCGATGATGCACGAGAACATGC
CGAGCGCCAAACGACGCTCCCGACGCACGACCTCCGAGCCGAGGCGACGT
AAAAACTCGTATCTCCGACCAAACGGTTGCGAAGGTGCCAGACAGCCCGG
ACACGATGACTGGGATGAGTGGGTTCACGCAGGAGGGATGGTGTCAGGAA
AGTGGGGAGTCGTGCCGAGGCGAGAGCGCCTGCGCAGGACAAGCAGCCGC
AATGACTTGTGGGTCGATGACAACCCCTCCGCCTATGACGTAGCCTGTGT
GGGTGCACGTCAGGACGCACTGCGCAAGCGTCAGGCAACAGGCTCATGTA
CACGTCAGCGTCTGGGCTCGAATCATGCATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00000580-exon-Sc0000000-1564993656:4144059..4144261 | BlTCONS00000580-exon-Sc0000000-1564993656:4144059..4144261 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4144765..4144941 | BlTCONS00000580-exon-Sc0000000-1564993656:4144765..4144941 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4145488..4145654 | BlTCONS00000580-exon-Sc0000000-1564993656:4145488..4145654 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4146162..4146430 | BlTCONS00000580-exon-Sc0000000-1564993656:4146162..4146430 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4148092..4148710 | BlTCONS00000580-exon-Sc0000000-1564993656:4148092..4148710 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4148971..4149126 | BlTCONS00000580-exon-Sc0000000-1564993656:4148971..4149126 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4150025..4150208 | BlTCONS00000580-exon-Sc0000000-1564993656:4150025..4150208 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4150518..4150592 | BlTCONS00000580-exon-Sc0000000-1564993656:4150518..4150592 | Branchiostoma lanceolatum | exon |
| BlTCONS00000580-exon-Sc0000000-1564993656:4150956..4151224 | BlTCONS00000580-exon-Sc0000000-1564993656:4150956..4151224 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:4144059..4151224 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF000313 |
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