BlTCONS00000562 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000562
Unique NameBlTCONS00000562
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3960232..3966153+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000562 ID=BlTCONS00000562|Name=BlTCONS00000562|organism=Branchiostoma lanceolatum|type=mRNA|length=5922bp|location=Sequence derived from alignment at Sc0000000:3960232..3966153+ (Branchiostoma lanceolatum)
GACGCCAACAATCCTTGCCATGTGCGTCACAGGTGCCCTCGGGACAGTAA ATACCACAGACAGATAATATCCACCACCAATCTCCTCCCAGGCTTCGGGT TATTTTATCCGCTATATGAAACCCTCTCGACTGTAACGACGTCACGAAAA CAATCGCCCCCACGTTTCCTGCGGTATGCGTGACATGGAAGGCACACCGT AAACTTTATCCGGCGGGCCCTGGTGTCATGAAGGACAGTGGTACGTCCGA CCATGCACGCTTGGTCACAAACTGCAGTTTCAAATCAAAGAAAGAAACAG AGACAGCGTTCACCCGGAAGGCGTGCACATGCTGACAACAGCGTAGGGAG AGTTTGGGAGCTTCTTTTGGGAGGAGGAAGTATGCTGTCTCGAGGGCCTG GAGCGGCCCGAGGGGTGGTCACCAGGGCGCGACCGCGCAGGTTTGATACG GACCCTGACGCCACCCACGCCCGCGGGTCTACGCTACCCAGCCCGTCGGA GAGGGTGGTGATCAACGTTAGCGGCCTGCGGTTCGTCTCGACGCTGCAGA CGTTAGAAAGGTACCCGGACTCGCTGCTAGGCGACCCGCGCAGACGACGG TGGTATCACGATCCGAGTCGGAACGAATTCTTCTTCGACAGGTAAATGCA TGTATATGACACACTCATGCACCTGTTCCGAACACCAGGGAATTATGTGT GAATAAGCTAGATAAGAAATACACCTTTCCTTATTGAAACTGTAGGTTCA AATGTTACTTTCTTTGTAGACGAACAAGAAATGTTGTTTGTCATATCATC TAGATACAGTTACAGAAAAATCGTTCTCATAATAGTGTTAACATTTTGCC TTGTACTTTTGTTTCAAATGATCTGTTTTCAGTAATGCTAGCGGGCCTAC TTGTTTTACAGGTGTTCATGAAAAATTGATTTTTAATCTCACTAATGAAT ATTTAAATGCTAGTACTGTGTACAAGGGGATGCACTGTACTTGTAAATCT TCTGCGGCGTTATTGGCACAAATAAATTCCAGGCATGTATCTTAATGATT TTTAACAAAAGCATCGAACTTCGTTATCTGCATTGGACGTTGGACAGTTT ACATTCCACTGCCGCTGCAGAAAATACATTGGACAAAACAATAGCTGAAG CAGAAACACCTTTGATGTAGTTGTCACTCAACTCCTATTCGTTTCTCTCT ATATATAAGTATTTACATGTATTACATTTTTGTCTACCGTCTGTTAGGCC ACACTGACTTGATAATTTGGATGGCATCCGCGCGCTTCAAACTTCGTCCG TTTTTTAAAACAATGTTTGCAACTACACTATAACTCATAAAAGAAGCTGC AAAATGATCACATTCATGCCGTAAATGGCACAAGAATATCGGAAAACGGA TACTGAGGTATAATGCCATTTATAAAGTCAATTCCAAAGTAAAAGAATAA TATATGAAAAAAGATAAAGAATTCTATTGTTTGGTATAACATTAAGTTAA TACATGTATGTATCATAAATGGACCCATAAAGAAGGATCGCAGGTGTGTG TGCCTGTGCGTTGTGTAGGGGGGGTGGGGGTGTTAACAGGTAAATATAGG AAGGCTGTTGACTGCATTCATGAAAAACTATATTCAAGCTGCTGAGAAAG GGGAAAAAGTAACAGTCACTTATCGGTTTCTGAATGAATAATCAATAATA TGTCAGTTATCGGTTTCTTCTGAAAGCATAGTCAATACTAGTATATTTAG ATCGTTCACTGTTCTTTGCTGTTTTCGGTGAAAAGTGCTCTCTCTACATC ATGTTCTAGTGTCATACAGTACAGCTGTCAAGTACATTTTCAATGCTTTC CTCTCCTAGACATCGCCCGAGTTTCGAAGCCATCTTACAGTTCTACCAGA CCGGCGGAGAACTCAAGTGTCCTCAAGAAGTGCCCTCGGACGTCTTCGTG GCCGAGATGGAGTTCTACGACCTCGGGGAAGAAATGATCAAGGCGTAAGA TGGATAGGTAGTCAAAATGGGGAGGGTTACGATCGTCCCTCCATGCATCT GCTTGGAGATTGCTAGATTTGTCAGATTTGTCATTTTTATAGCAGGCAAG GTCACGAGGGTTAACATGGGTCAGAAAAATACTGTAGATCTTTGAATGTT CGCGTGGGGTTTATTTTAGCGGTTTTGCTATTTTAGCGGCTTATATATTT TCCATTCTTTACTATCATGTTTAAACCGCGAACTTAAAATACAGCAAAAA GACTCTCCGCGAAAGTAATTGAATGAACACGTAAACGAGCTTTACGAGCT TTGATGATAAACAAGCTTACTTCTGTAGTGCATGGGGTTAAAGATAATGT TTTGAACAATGAACAAAATAGGACTGTAAAAGATGGACATGACATTGAAT ATCGATAATAGGCTTTTAATTCATTCAATTTATCGATGAATTGATCGTAG CATGCGGAAACAGAACATGATTAACATGTGTCTGTCCAGTGATACATCAC GCAACTACCGATGACTTGTTCCCAGGTTCCGAGAGGAAATGGGCATGGAA CTGCCAATGCCAGACGAGATTCCGCCCCCTGAGGACGAGATGCTGCTGAA AATTTGGCGCCTTTTCAGGGACCCGAGTTCATCCTTCTTGGCCAAACTGG TCACAGGTCGGTTGAGCATGGCTCTGATTGGGGCAATAGTCTGTCTGTGC TATTGGTTGTGAACACATGACGTCATAGACACCATGCAAGTTGATTGGTT GTTAATACATGACGTCAGAGACACCATGCATGTTGATTGGTTGATTGGCT GAGTCTAGAAGTTCAAATCAAACTTTGCCAGGCCCCTTTCAGGTTTAAGC ATCCAATATGGCGGCAATTGCTTACGTCATAGTCACGTGAGTGTAACCCC CCATATCTAACCACAGCAATAAGGAAATGGCAACGTGTGATTGGCCAACG TTGACCAATCGGATGGCTTCATATTAAGCCGCTACACTCTCGCCCATTTT TGGTTGTCTTTTCTTTGACCAACCATAACCACATGTGTGACATGTAAACT GGGGCTTTAGAGTAAAGTAAAAGAAGAACAACAAAATAACATTCGTAAAA GTCTGTTTGGAATTCCCGCCCTTTAACGGTGAACTTTTGTAGCGCAAGGG GTTAAAAGAAAGCGTTTCGAACAATTAGAAAGGACCGAACAAAAACAAAA GGAACGTAAAGAAGAACACAGAAATTGAATACCATGTTAGCGTTAGGCTC TTTGTTTGAAAGAGTGATGAAACGCCGTGAGTTCGAGCGCGTGAAATTAA AATGCGTCTTTTAAAGTTCAGGACAGCCCCCGTTAGTGATCACCGCATTC ACGACTAACTCCCATCCATGGTCTGGAGAACGTTGGGAGGTCATAGTCGG CTATGCGGTACAGGGGCTTTAGTATGGATAATACTGTTACTCTACCCCCA CCACGATGCAGTGACCTCTGTGCTGATGATTATCATGAGCGTGTTGGTGA CGTGTATGGAGACCGTGCCGGACGTGCAGACCTGGGTTCACGCCTACAAG TACAGGAACGACACCAACGGAACCCTGGTCAGGCTACCCCGCACTAGGAA CCCGTTCTTCGTGGCAGAGACCATCTACGTGGCTTGGTTCACACTGGAGT TGGTCTTAGGTGATTTAATTTAAACATACATGCATTATAAATGTGTCATT TACCGTAGTGCTTAGAGAGAGAGAGAGCAGGGGAAAGAGAGAGAAAGAGG GAGTGAGAGAAAGGGAGAGAGAAAGAGAGGAGGAGAAAGAGAGGGAGAGA GAGAAAGAGAGGGGGAGGTAGAAAGAGAGAGAGAGGGGGGTGATGGGTTA TGTAGAGAGCACCTTGTATCTTGTTCAAAAAATTAAGAATGATGAGGAGA AACGATTTTGATGACAGTTGCTAAAATGATAAGAAAATCAACCAATTTCT TACCACCCAGTTCGTTCTTTCTAAATGCAACATCTCTACAAAGGTATGTT TTTCGTTGGTGGTTTGAACGTAGGTTAAGTCTCTTTACACATTATTCTTT TTCCTCACCTCAGGTTTTCTGGCATGCTCGGATCGAGTCAGGTACAGCAA AGACTACATGAACATCCTGGATTTGGTGGGCATCATTCTGTACCTGGTGG ATGTGTGCATAGAGATCAGGTAAGGATGGCGACTGTCTTTGACGTTTGTA AATGCAGCTAGGTCACTTCATGCATTTATTGGCCAAGTAGCTGCTTTGCT TCGCCCTTATCTTTTGGGCGGCGCTCTTGGGAAAGATCCTTTCGGCGAGA AAAACTTCTATGAAAAACTCTTTGGGTCTCTTGCAAAAATTTGTTACATC GGCAGAGTACACTGGATAAAACAACCCTTGCCAATCACTAGCCTGAACTC AATCAAGCTCCTGTAACGGCTTGCTGCCCTGTAACCGCATAGCCGCGGGG AGGGGACAGAAATCCCCGGACAGCTGGAGTTTGCGTTATACAGACTAGCC AATCACATGTACAAAATTGTAATATCAAGTACAGCGTTTTCCTTTACAAA GTTCTTTCCTTTTTTAAATGCCGACACGAAAACAAACAAACCGAGGCTTG AGTGCGCCAGCCCACCGCTACCTGTTGTCATAACATGTGGAAATAAATGT TTCAAAAAAGCTTACATTCCGTTTTCTGCTAGCACGGTGAACACAGATGG TCAGATTGACCGCGTGGTCAGCGCTTTGTGGACAGCGCGTCTCATCCGAA TCCTGCGGGTGGTCAAACTGACGCGCTACTCTGTCGACATGCAGCTGTTC TGGAAGGCCATGGTAGGGGGCGCTCTTTCAATAGAGTCATTACCGTGTAT AGCCTCTACCAGGTTTCAGAGGCGACTGGAAAGAGTAGAAATATTCGGCC AATTTGTACTCTTTCTAACCACCTCTCTTGAAGCCTGGTAGAGGCTATAC CATGTGCACTGAGCACCATATAAACCTTAAGACTAAGAACTAACATCTGT TTGGAGAGATATTAATCCTTTACTATTGCCAATAAGAGAAGAAAAGTTTT GATTCATTATCATTGCCAAGGTCATGTTTTCGGGTTTGTGTGTGTATGTC TGTGTGTGTGCATGTACATGTGTGTGTATGTATGTGCTTGCGTATGTTCG TGTGTGTACATGTATGTGCGTGTATGTGTGCGTGTGTGTATTTTCATCTG TATTTGTGTGTGTGTAAATGTACTAAGTATGTGCATGAATGTACATGTAC ATGTGCATGTGAATGTGTGTGTGCCAGGTCAGCGGCCAGATGTCACTGTA AACATCTTGTGGCAGGTCATAAACCCTTGATCAACTATTTGCACCACGAC TCTTCTTGGGATAGTAAGCATTTGAAGATTTCCCGTTGAATGGCATCTCT CATTGGCTAAATATAACTCCTCTCCTCCAGACCAACAGCTTGCCCGCTAT GGTCCTCTTCACTTTCACCACCATGGTGCTGATGGTGGTGTTCTCTGGCA TCGTGTTCTTCTGGGAGTCCGAGTATCCCGACACCAAGTTCACCAGCATC CCCGACACTTTCTGGTGGGCCATCATCACCATGATCAACATCGGCTACGG CGACCACATCCCCCAAACACTGGTGGGAAAGATAGTTGCGAGCGTCGCTA CCATCGCTGGGATCGTTTCGCTGTGCCTGGGGATACCCGAGTTTATGGAG TGTTATATACAGCTGTATGAGGCAGCCAGGTATAGTGCAAAGAGACAGGC CAGGCGTAGGTATGGAATGATGTCCAAATATGGGATGCTAGGAGGGAATA AGTCACCTTTTTCGAGGAAGAGGAGAAGGGATGGGAAGTTCACTCTCATC ATATAATTGCAGATAGACCAGCGACACAGCTGAAAGATGTTTATTGAATA TGTTAATCTGTCTAAAAATCCC

Coding sequence (CDS) from alignment at Sc0000000:3960232..3966153+

>BlTCONS00000562 ID=BlTCONS00000562|Name=BlTCONS00000562|organism=Branchiostoma lanceolatum|type=CDS|length=1515bp|location=Sequence derived from alignment at Sc0000000:3960232..3966153+ (Branchiostoma lanceolatum)
ATGCACGCTTGGTCACAAACTGCAGTTTCAAATCAAAGAAAGAAACAGAG
ACAGCGTTCACCCGGAAGGCGTGCACATGCTGACAACAGCGTAGGGAGAG
TTTGGGAGCTTCTTTTGGGAGGAGGAAGTATGCTGTCTCGAGGGCCTGGA
GCGGCCCGAGGGGTGGTCACCAGGGCGCGACCGCGCAGGTTTGATACGGA
CCCTGACGCCACCCACGCCCGCGGGTCTACGCTACCCAGCCCGTCGGAGA
GGGTGGTGATCAACGTTAGCGGCCTGCGGTTCGTCTCGACGCTGCAGACG
TTAGAAAGGTACCCGGACTCGCTGCTAGGCGACCCGCGCAGACGACGGTG
GTATCACGATCCGAGTCGGAACGAATTCTTCTTCGACAGACATCGCCCGA
GTTTCGAAGCCATCTTACAGTTCTACCAGACCGGCGGAGAACTCAAGTGT
CCTCAAGAAGTGCCCTCGGACGTCTTCGTGGCCGAGATGGAGTTCTACGA
CCTCGGGGAAGAAATGATCAAGGCGTTCCGAGAGGAAATGGGCATGGAAC
TGCCAATGCCAGACGAGATTCCGCCCCCTGAGGACGAGATGCTGCTGAAA
ATTTGGCGCCTTTTCAGGGACCCGAGTTCATCCTTCTTGGCCAAACTGGT
CACAGTGACCTCTGTGCTGATGATTATCATGAGCGTGTTGGTGACGTGTA
TGGAGACCGTGCCGGACGTGCAGACCTGGGTTCACGCCTACAAGTACAGG
AACGACACCAACGGAACCCTGGTCAGGCTACCCCGCACTAGGAACCCGTT
CTTCGTGGCAGAGACCATCTACGTGGCTTGGTTCACACTGGAGTTGGTCT
TAGGTTTTCTGGCATGCTCGGATCGAGTCAGGTACAGCAAAGACTACATG
AACATCCTGGATTTGGTGGGCATCATTCTGTACCTGGTGGATGTGTGCAT
AGAGATCAGCACGGTGAACACAGATGGTCAGATTGACCGCGTGGTCAGCG
CTTTGTGGACAGCGCGTCTCATCCGAATCCTGCGGGTGGTCAAACTGACG
CGCTACTCTGTCGACATGCAGCTGTTCTGGAAGGCCATGACCAACAGCTT
GCCCGCTATGGTCCTCTTCACTTTCACCACCATGGTGCTGATGGTGGTGT
TCTCTGGCATCGTGTTCTTCTGGGAGTCCGAGTATCCCGACACCAAGTTC
ACCAGCATCCCCGACACTTTCTGGTGGGCCATCATCACCATGATCAACAT
CGGCTACGGCGACCACATCCCCCAAACACTGGTGGGAAAGATAGTTGCGA
GCGTCGCTACCATCGCTGGGATCGTTTCGCTGTGCCTGGGGATACCCGAG
TTTATGGAGTGTTATATACAGCTGTATGAGGCAGCCAGGTATAGTGCAAA
GAGACAGGCCAGGCGTAGGTATGGAATGATGTCCAAATATGGGATGCTAG
GAGGGAATAAGTCACCTTTTTCGAGGAAGAGGAGAAGGGATGGGAAGTTC
ACTCTCATCATATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000562-exon-Sc0000000-1564993656:3960232..3960872BlTCONS00000562-exon-Sc0000000-1564993656:3960232..3960872Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3962091..3962225BlTCONS00000562-exon-Sc0000000-1564993656:3962091..3962225Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3962757..3962887BlTCONS00000562-exon-Sc0000000-1564993656:3962757..3962887Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3963693..3963890BlTCONS00000562-exon-Sc0000000-1564993656:3963693..3963890Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3964295..3964400BlTCONS00000562-exon-Sc0000000-1564993656:3964295..3964400Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3964914..3965043BlTCONS00000562-exon-Sc0000000-1564993656:3964914..3965043Branchiostoma lanceolatumexon
BlTCONS00000562-exon-Sc0000000-1564993656:3965662..3966153BlTCONS00000562-exon-Sc0000000-1564993656:3965662..3966153Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000562BlTCONS00000562-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3960232..3966153 +
Properties
Property NameValue
GeneIDBlCUFF000298