BlTCONS00000558 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000558
Unique NameBlTCONS00000558
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3956239..3960121+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000558 ID=BlTCONS00000558|Name=BlTCONS00000558|organism=Branchiostoma lanceolatum|type=mRNA|length=3883bp|location=Sequence derived from alignment at Sc0000000:3956239..3960121+ (Branchiostoma lanceolatum)
TGTTTTCATTCTGTTTGAAGAAATGCCGAAAGTCAAGTCCAGCCAGTCAC ATGCGTCCTACGACAACTCGACAAAGCTGGAGATTCTTGAGACCCAGAGA AGAAAGCAGTGGAGCAACAGAAAAGCCGCCAAACACTTCGGCGTGGCCGA GGGCTCCATCCGGAAGTGGAAGCGGGTCGAGGAGCAGCTTGCCGCCGCGC CAACGTCACGCAAGAGGCTGTCCGGAGGAGGTCAGAAGGTCAAGAACCCC GAACTTGACCGTACATTGATAGAATGGATAGACGTTCAGCAAAGAGAAGG AGTCCCCGTGAATGGAGCAATGATCAAGGACGAAGCCAGGAGGATTTCAG GCGGCGACGACTCGTTCAAAGCGTCTAACGGCTGGTTGGGGGGTCTGAAG AAGAGGCATGGGCTGATGAGCACCAAGAGAGGGAAGACTGGGACCGTGGT TTGTGTGGTACAACAGGAGCCGAAGGACAAGGTAACGGATTTTCTAAGAT ACTCCTGGACACCATTCGTTTGAGGTTTCCTCCCTGGCTGAATTTGCATT TTCACTGATAATCTGATAAAGAAAGAACTGTAGTTGTAATGAATATTGAT AGCTGGGTATGAAAGAATTCCAAAGATGATGCAGGGGGACTGCATGGGCC GTTTTATTGAAGGCGTATGAAGGCCGTTAAAGAACTCACGAAAGGATTAT TGTTTTTACATGTAGATAGCTTCGGTGGATATTTGCATAATTTGATCGAG GCTGATAATGCACATCAGGACCTAATGATAATGATAATAATGATAATGAA GAATGAAGACCTATAAGTACGTTTTATCATTCCGCTGACTTCCATGATAG GACTTCCAAAAAATTACATCCTGTGAATATTTGTAATGTGGATGGAGAAC ATTATCGTCAGATTTAATTTGATACAGATAAGGAGATTATTTACATGTCT AACACGAAACGCCTATAATGGTTTAGCAGTAAATGATGAGGTCTTCATAT CAAGTTGTGACATTTGCTACATCATATATGAATTACGCAACGTAGGGCAT ACGTCGCCTGGGTGTTCTTTAACGGCCTTTCTAACATTGTTTTCAGTCAG TCGAAGAAGCGTCTGAAGTCAAGTCCAGTCAACTTCATGCGTCCTACAAC AACTCGAGAAAGCTGGAGATTCTTGAGATCCAGAGAAGAAAGCAGTGGAG CAACAGAAAAGCCGCCAAACACTTCGGCGTGGCCGAGGGCTCCATCCGGA AGTGGAAGCGGGTCGAGGAGCAGCTTGCCGCCGCGCCAACGTCACGCAAG AGGCTGTCCGGAGGAGGTCAGAAGGTCAAGAACCCCGAACTTGACCGTAC ATTGATAGAATGGATAGACGTTCAGCAAAGAGAAGGAGTCCCCGTGAATG GAGCAATGATCAAGGACGAAGCCAGGAGGATTTCAGGCGGCGACGACTCG TTCAAAGCGTCTAACGGCTGGTTGGGGGGTCTGAAGAAGAGGCATGGGCT GATGAGCACCAAGAGAGGGAAGACTGGGACCGTGGTTTGTGTGGTACAAC AGGAGCCGAAGGACAAGGTAACGGATTTTCTAAGATACTCCTGGACACCA TTCGTTTGAGGTTTCCTCCCTGGCTGAATTTGCATTTTCACTGATAATCT GATAAAGAAAGAACTGTAGTTGTAATGAATATTGATAGCTGGGTATGAAA GAATTCCAAAGATGATGCAGGGGGACTGCATGGGCCGTTTTATTGAAGGC GTATGAAGGCCGTTAAAGAACTCACGAAAGGATTATTGTTTTTACATGTA GATAGCTTCGGTGGATATTTGCATAATTTGATCGAGGCTGATAATGCACA TCAGGACCTAATGATAATGATAATAATGATAATGAAGAATGAAGACCTAT AAGTACGTTTTATCATTCCGCTGACTTCCATGATAGGACTTCCAAAAAAT TACATCCTGTGAATATTTGTAATGTGGATGGAGAACATTATCGTCAGATT TAATTTGATACAGATAAGGAGATTATTTACATGTCTAACACGAAACGCCT ATAATGGTTTAGCAGTAAATGATGAGGTCTTCATATCAAGTTGTGACATT TGCTACATCATATATGAATTACGCAACGTAGGGCATACGTCGCCTGGGTG TTCTTTAACGGCCTTTCTAACATTGTTTTCAGTCAGTCGAAGAAGCGTCT GAAGTCAAGTCCAGTCAACTTCATGCGTCCTACAACAACTCGAGAAAGCT GGAGATTCTTGAGATCCAGAGAAGAAAGCAGTGGAGCAACAGAAAAGCCG CCAAACACTTCGGCGTGGCCGAGGGGTCCATCCGGAAGTGGAGGCGGGTC GAAGAGCAGCTCNGAGCAGCTTGCCGCCGCGCCAACGTCACGCAAGAGGC TGTCCGGAGGAGGTCAGAAGGTCAAGAACCCCGAACTTGACCGTACATTG ATAGAATGGATAGACGTTCAGCAAAGAGAAGGAGTCCCCGTGAATGGAGC AATGATCAAGGACGAAGCCAGGAGGATTTCAGGCGGTGACGACTCGTTCA AAGCGTCTAACGGCTGGTTGGGGGGTCTGAAGAAGAGGCATGGGCTGAGG AGCACCAAGAGAGGAAAGACTGGGTCCCTGTTTCGTGTGGTACCACAGGG CATTGAGGACAGTGGGCATGATTCTAATGAACCTATAGTGTGGAGCGTGG CATCGTGTGGTGTCATGGTTAGGGCGACTGAGAATGTGATGGGTTCAAGC ACCTGAGATGCCCCGATGGCGTACTCTGTTATGTGCAACGCTGACACTGT TCGAACGTTCATGTTAACAATCTAAAAGACTAATCGTCAACCTCTCCCAA ATAGGTGTAATTTGGTCAAACATTCGTACAATAAACCTCTTTTTCTGAAG TGGCCTTTAGAGTAGGCTCCGTTGCAGGCTCTGAACCGGCTTTTTAGGGG GCTAAATAATACACTTTTTGCAGCCAGTATCAGCCAACCCCGTAACTATC AGCCGGCAAAAGTGTATTATTTAGCCCCCAAAAAGCCGGTTCAGAGCCTG CAACGGAGGCTACCTTTAGAGGACAAATGCACCGAGGAGTTTGTATTCTG TTCTTTCTTTCATTCATGTGTTGTTGTTTTTTCATGGTAAAATATAGCAA TGTGCTGGACGGAATCGCAGCATTGTTCCATTATAAAAATGTACAAGTAT AAGGGTGGGCTTCCCGAACTGAACTCATCCTAAAGAAAGCTCAAAAGTAA AGCTGAATCAAAACGATATAGATGGTATGCAAAGAAGAGAGATCATTCAA GAAAAGATGGTGGACAGCCCCTTCAGCTTTTGAATTGGAATGGCTATATA CGAATGAGTCTGTGTGTGATTCTTTGTACTGTGTGTGGACTATTAACAAA GAGTGTGTTTAGTGTACGTTTGTGTGCTTACAACACTACAGTGAGTGATT TCAACAAAAGCTTGGTGGCCTACTGTTTCTGTTGTGATGAGTTGATGGCA AGAATTCATCGCGAACATAAAACCATCGCGACAATTTCACGGTTTACAGT AGTACCGTACGCATAGCTTGTACGCGCGTTCTGTATATTTAGTCAAATGG CCCCAGGACTGGATTCCCGGTGTGCTCCAATGGATGAACACACAGCTCTA CCTGTCCTACATTAGATACCGTACAACAACTATGTTTCCACGCAGCTAAG TACTACAAACAAACAAACAAACAAACAAACAAACAAATTAAACTTTTTAC TGAATTAATCGCTTGAATCCATGTGCCACAGCCCTATCCGGTCGAATTAT TGAATTGCCTTCTTATATATTTTCATTGAATACAGTTCCTTTGTGTGTAA GTTTTCTTATTGACTAAGAGAAGACGATCATGC

Coding sequence (CDS) from alignment at Sc0000000:3956239..3960121+

>BlTCONS00000558 ID=BlTCONS00000558|Name=BlTCONS00000558|organism=Branchiostoma lanceolatum|type=CDS|length=573bp|location=Sequence derived from alignment at Sc0000000:3956239..3960121+ (Branchiostoma lanceolatum)
GTTTTCATTCTGTTTGAAGAAATGCCGAAAGTCAAGTCCAGCCAGTCACA
TGCGTCCTACGACAACTCGACAAAGCTGGAGATTCTTGAGACCCAGAGAA
GAAAGCAGTGGAGCAACAGAAAAGCCGCCAAACACTTCGGCGTGGCCGAG
GGCTCCATCCGGAAGTGGAAGCGGGTCGAGGAGCAGCTTGCCGCCGCGCC
AACGTCACGCAAGAGGCTGTCCGGAGGAGGTCAGAAGGTCAAGAACCCCG
AACTTGACCGTACATTGATAGAATGGATAGACGTTCAGCAAAGAGAAGGA
GTCCCCGTGAATGGAGCAATGATCAAGGACGAAGCCAGGAGGATTTCAGG
CGGTGACGACTCGTTCAAAGCGTCTAACGGCTGGTTGGGGGGTCTGAAGA
AGAGGCATGGGCTGAGGAGCACCAAGAGAGGAAAGACTGGGTCCCTGTTT
CGTGTGGTACCACAGGGCATTGAGGACAGTGGGCATGATTCTAATGAACC
TATAGTGTGGAGCGTGGCATCGTGTGGTGTCATGGTTAGGGCGACTGAGA
ATGTGATGGGTTCAAGCACCTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000558-exon-Sc0000000-1564993656:3956239..3956588BlTCONS00000558-exon-Sc0000000-1564993656:3956239..3956588Branchiostoma lanceolatumexon
BlTCONS00000558-exon-Sc0000000-1564993656:3958771..3960121BlTCONS00000558-exon-Sc0000000-1564993656:3958771..3960121Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000558BlTCONS00000558-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3956239..3960121 +
Properties
Property NameValue
GeneIDBlCUFF000297