BlTCONS00000544 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000544
Unique NameBlTCONS00000544
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3839484..3841468+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000544 ID=BlTCONS00000544|Name=BlTCONS00000544|organism=Branchiostoma lanceolatum|type=mRNA|length=1985bp|location=Sequence derived from alignment at Sc0000000:3839484..3841468+ (Branchiostoma lanceolatum)
GTCCAGCAAACACCACAAGCAAGCTTCAACATGGCAAATAATACAACACT GGTACGTACACTACTTTTTGTCCACTCTTTAGATAGAAGAAANTTTTTGT CCATTCCTTAGGTAGAAGAAATATTTTCTGAAACAAGTTTTAACTGTAAT TATTTCAAGCTAAGAAATATTTTCATACATTTTCATACCTTCTATATTCA TAATTGATTGACAAAATGATGCAATCTTGACACTCATATTCAAAATCGGA GCATATGCCCTGTATATTTCCTCTCATATATTGTCCCAATTTTTTTTTTC AGTTATGAACATCTACATGATTTCTTCATCATATGTATGTGATCTATGTT GTGAAAGTCTACATATATTTTCATTACAACTATTTTACAAGAATATGAGA GTGCTTTTTCCCATCCGTGCCTTACATTTTTAAAGGCATTCAACGCCACA ACTGTGCTACAGACGACACCGTTACCCATGACAACGTCATCAATATCAGC TGTCACTGACATGGCGGGCAGTATCGGACCGCTAGATGTCGCTGCTATCG CGTGCGGCCTTTTCATCTTCATAAGCCTGTGTGTTGTGACGGCCCTGTCC ATGAAAAGAAGGAAGAAGGCTGCTAAGAAGGCGCGTTTTCTGGCGGCGTC ACAGGCAAAGATGAGGGAAGAGTCAACTGTACAAATAGCGGGAAGCACGG ACACACTTTCGAGTGTATATACCGTTGAAGAGAGCGGAAAGTAATAGAGT TTGAGAGTACAGCACATTCAGTTGTTAATTATTTTTTGTATTTATTGGTT CAGCATGTAATTACGATGTACATGGCAGGGTTGCCCAACTAGGCGGAGAC TATTTCTAAGGGCAAACCCTGGTTCTTTCTAATAGTTGGTTAGAATATAA TCTCCAAGCAGATGTAGTGACCCGGCTCATTCTCAGTGCTTTACGCATGT TTTTTGCAATATTAGTACTCTTTTCTATCTGTTTTGAACCGGCGATTAAG TTATTTATTTATTTATTTATTCATTAAACTTTACAGAATGAAATCTGAGA GGTGTTGGCAACAGGATCGATGTTAATACTAGAAAAGAGCAAGAACAAAA ATAATGTGTATGAGCCTGATCCTTACATCTGCTTGGAGATAAGTTAAAAT GCACATAGGACAGGATTGCGGGTTAAATTCAAAAATATTTATTTGTATCA AAATAATCTTTGTCCAGGAAAATCATGAAAGAGAAGACTTCGTAATTGAG TAAAAACAGGGATAGACAAATGCTTGAGCATTTAAGAATAAAACTTTATT CTGTATAAAAAACACAGTGCAAGGAATTAAAACACATCCTTTTTGTACGT AAACTCTCTAATAGTGACAATTCTCAAAAGGTACAATTACTCTTTATGTA ATATTTACATGTGTACCATGTAGATATGTTTGTTTTTGTTTGAACCTTTG TTTATTTATGATAAGCTTAAATCGGCACGCAGGCCGCTTTTCATTGAGGT CATGAGGGAAGAGGTAAGGGTCAGATACAAAATAGCAGAGATACACAGTC ATTTGAATCCTAATAACTCTATCAACATATATCATTACATATTTATGGTA CAACAATGTACAATTGCTACAACATACAACATATAGTAGGGCGAAAGCTG GTTCATTGTCCGTGTCCGTTCGTTTGATATGTTAAGAATATGTGTAAACA CAGAACGCTATGTACAAATATAGGTTTTCATCTTTACGCACAGATTTGTT TGTCACAAAGATATCAACTTTAAGTCTTGTAACTATCAATATCTGTTCTT ATCTTATACAGGATTCGAGTGTATATAACCATAAGACATTATTTACAGTA TCCTTGTCCCGAAACATACCGATGAAGGTTTAACTTTGTGAAAGAAATGT CAGATCGCGACCTCTATTGAGATTAAGCAAAATTGCATATCAAAGATATT TCAAGAGGAGTTATTTTTTAAGCAATGACTGTACA

Coding sequence (CDS) from alignment at Sc0000000:3839484..3841468+

>BlTCONS00000544 ID=BlTCONS00000544|Name=BlTCONS00000544|organism=Branchiostoma lanceolatum|type=CDS|length=360bp|location=Sequence derived from alignment at Sc0000000:3839484..3841468+ (Branchiostoma lanceolatum)
GTCCAGCAAACACCACAAGCAAGCTTCAACATGGCAAATAATACAACACT
GGCATTCAACGCCACAACTGTGCTACAGACGACACCGTTACCCATGACAA
CGTCATCAATATCAGCTGTCACTGACATGGCGGGCAGTATCGGACCGCTA
GATGTCGCTGCTATCGCGTGCGGCCTTTTCATCTTCATAAGCCTGTGTGT
TGTGACGGCCCTGTCCATGAAAAGAAGGAAGAAGGCTGCTAAGAAGGCGC
GTTTTCTGGCGGCGTCACAGGCAAAGATGAGGGAAGAGTCAACTGTACAA
ATAGCGGGAAGCACGGACACACTTTCGAGTGTATATACCGTTGAAGAGAG
CGGAAAGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000544-exon-Sc0000000-1564993656:3839484..3839534BlTCONS00000544-exon-Sc0000000-1564993656:3839484..3839534Branchiostoma lanceolatumexon
BlTCONS00000544-exon-Sc0000000-1564993656:3839919..3841468BlTCONS00000544-exon-Sc0000000-1564993656:3839919..3841468Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000544BlTCONS00000544-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3839484..3841468 +
Properties
Property NameValue
GeneIDBlCUFF000289