BlTCONS00000453 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000453
Unique NameBlTCONS00000453
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3412445..3418990+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000453 ID=BlTCONS00000453|Name=BlTCONS00000453|organism=Branchiostoma lanceolatum|type=mRNA|length=6546bp|location=Sequence derived from alignment at Sc0000000:3412445..3418990+ (Branchiostoma lanceolatum)
CTCTCGTCCATAGACCATAAAAGGGAATGTCAACTCTGACCCCGACGACA ATAGGGCCCTAGGGAACGTGCGTGCCCCCTCGAGATATTCAAGTAGAAAG TCTCAACTCCGACAAGTGGTTTATTGTTGTTCCCAAAACAAGGTGAGCTT TACAGGTCTTTTGTTGGCGTTGGTTAAAGATAAACGCTTGGACGGTTTTC AGTACTGGTAGAAAAGGATAAGTAAGTAGAGGTAGCCACTTACCAAACAC AGGTGAGGCTTTTTACAGTATTCGCAGCGTGTAGCTATCGCTTGAACCTT GACATAAGAATCAACCTTGTCGAGCAAGTTGTACACATTCAAGGGAGCTG AATAATAGTTACATACTGTCTTTAACATGACATGATAACTCAATGATAAG TTAACCTTTTTGCTAAGTGTTTTTTTTACTGTCGTTTCCTTGTAGCGCAA ATGCTTCAACTCAAATCCCTTCACTGTCGCTAACAACTGATATACAATAT ACAAGTTTTATTACAACAACGGTGCATGTAACTACAATTCATAAAGACCT ACGGGCAACCAGTAAGCTTACAAGAACATGGGAGGGAGGTTTAAAAACGA TAGGTATCAGAATTGTGTTTTACAGTCTTTTACTGAAGGCGTTGCCTCAA ATTGCTTCGTGCTTTCTCAACCGCCACTATAAGGAAACGTTCCCAGAAAA ACCCCACATGAGTCACATAAAGGAAGTAAACAGTGCATGACAGGGTGTGT CACGTGACGCGTCAAGAAATGGCGGAGACTTAAGACATGTTAACACCTTC TTTTGTACAATGACAAAAAGCATCACGTATACTTCGTAAAGCTGAGATCA AGATGCGTAACATATTTGCAAACCAGTCTCAGATGACATAATAGGTTAGT GGGGAGGGGCGTGGTTGAAAAATGCATCACATATTCTTTGTAAAGCTGTG TATTTTTGAAATCAAAATGCGCAACAATTTGCGGACCATAATAGTGGGGA GGGGGTGTGTTTGAAAAATGCATTACATATTCTCAGTAAAGCTGTATGTT TTCGAGATCAAAATGCGCAACTTCATTTGCGGACCAGTCTATGCCATGAT AGGTTAGTGGGGAGGGGGGCGTGGTTGAAAAATGCCCACTAAAGTTAAAG TTCAGCTCAGGACAGGTATGACACATTGATTTCGTCTCAATTCTAGATAT ACGCATCCTACGTCGTTAAACACTATCCACTAAGTCTTCTTTAATCATAC GTGACAGTTTTGTCGTGGCACTACAGTCTATACAGGCCAATTTTCAAGGA CCAGTCGTCTAAGTGTGTGTGTGAACAGTCGCCTATTTTTGAGTTCGCGC CAATGTTGTTTCAGGAACAATGTAGCAAATGAATGGAGTGTTTACCTTTG TGAAACACAACCACCGCCTTGTAACAAGACCCGCGGTGCTTGAAGCGTTA TAAATAGCTATAGCACAGAGAAACCTCGCTGTAGGGTTAAGAATAAAAAC TAGGACAGAAACTTTCAGTGAGTGATTGCTTATGAAAAGACAGATTAAAA CACCTGCTTAGGTTATGAATGATTGAAGCCGTCGTACATGTTTCTATTGT CATAATATATGTTGCCTACTTCTGTTGTCGCACGACATTGTGTCTTAAGA ATGCTAACAACAAAAAGTGCTATCTGTTCGTTGAAGGGATTATGTACATG TATACGTACGAACTTCTTAGGGCAAGCTAAAAACGTGTGTTAAACTTCAC CTCAAGACTGACCGTTCATTGTATGTCAATCAAAAACTGTCACGCACTAT CCCCGCCACTTTGTCGTGAAGAAAAACACTTAACAGGTCTCTTCTTGTTG TTCAACCCGTTCAGGTTTACTTGATCGCCGACTTCCTTCCACAAAATTAC GTCACTTCCTCACTTCCACCACGGCTTGTCCCGCCAGCACACCTGGCCAA GGAGCGGCCATGGACACCACCAACTTACAGAAAATCCGTGAGGAGCTCTT GTCCTGCGGGATCTGTCTTGAGACGTTCACGGATCCAAGGGTCCTGCCCT GTCAGCACACCTTCTGTCAGAACTGTATCAAACAGATCAGCGCAGACAAG CGAATCTTCCGATGCCCTACATGTCGAGAACAGGTCATACTCCCTAAAGA TGGCGTCGAGGGGTTCAAGAAGAATTTCGAGATCGCCAGTTTCTGTGAGA AGTTGGTGCCGGTTGCCAAGAAGCCGCCTCCGCCGATAGCTGCAAAGCCG CGCACGGGAGACAGGTGCGGGACACACAAGAAGGAGGTCCGCCGCTTCTA CTGCCAGCAGTGCAAGGTGGCCATCTGTAGCGAGTGCATTCTTGACATCC ATCAGGGGCATTCTATATGCAGCGCGGCTCAAGCGGCAGGTGGCAGTCGC GACCGGATTGGCGCAAATCTGAAGACGTGCAAAGAAAGAATCAAGATCCA CGAAGACGTCTCTAGCGGCGTCTCTGACAACGAGAAGAAGCTTGACGCCG AGAAAAAGGCGGTAGAGAGCACCATACGGTCTTACCAGCAACAGTTGATC GACGACATCAACAAGACGGCAGCGGTTTTACTTCAGGAGCTCGAGAGTCA CTTCATGACGAAACAAATGCGTTTGATAGAGCAGAAGGACTCGGCACAGA GCACGCTCGACGAGGTGTCGGCCACACGAGACTGGGCGGAGAAGAGATTG GAGTTCACCGAACCAGAGGTCATTGGGATGGAGGACGCCATTTGTAAGAA GTTAGAGGCTGCCATAGCAATGAAGGAGTTGAGTGCGGACTACATTTCGC TGGAAATGGACTTCCAGCCAGCTATCACTCCAACAGGGAAGGCCCTCCTA GGACATCTGAGGGAGAAAGGCTCTAACAAGGAACGACAGAATAGCCTCAC GTCTGCAAATGCGACACCGCCAACGGTCATGAGAGGTATCAACCCTAACC AACCGGTACCAGGTCTAGTCTTCTTCGGACACGAAGGTTCGGGAGAGGGC CAACTAGCGGAACCCAGAGGAATGACAGTCACCCCCGAGGGACGCATCTT TGTCATGGACGGCTGTAGTGACATAGAAGAAGGGGAGATTAAAGAGTACG ACAACGCCGGTCAGTTTGTGGGGAAGTCGTTCCAGCCGCACTACTTCCAT CTCGCCGCGGACAGGTATGTGTTTATTCAGTATTACCTTCGCCAAGAAGG TTGTATTTTCGGTAGCGTTTGTATGTATGTATGTATGTATGTATGTATGT ATGTATGTAAGTATGCATGTAGAAGTCCGGCATAAGTCGAGAAGTCCTAG ATGGATTGTATTGATATTTGGAAATGGAATGTGACTAGGTCTTGATGAGA CCTGGATATGATTAGATTTTGGGTATCCTGTCGCCTTGTTACGGTACTAC GTAAGAACTTCCTGTTTTGATATCTCGTTGCTGTGACTGACCCCCCCCCC TTCAAACTGGACCCCTAGGAAAAATGGCCAAAGCCGACAGGGTATTCCAG TCTAAAGATTGATTGATCGATTGGTTGATTGATTGATTGATTGATTGATT GATTGATTGATTGATTGACAGCACGGGGCACCTGTTCTGCACGAGGCCGC AGCAGGAGACGGTGGACGTGCTGGACAAGCTCGGGACGTGCGTACAGACC TTCGGGAAGGGGCAGCTCTCCTACCCGATGGGCATCGCCATCCACCCGGT GGGGGGTCAGGTACTGGTCACGGACACGCAGAAGTGCAAGGTAGGTTTTT TTTAAAATCTTTTATTGCACCATCAATAACAACACATAATGATGCCACAC TCGTGATGCAAAGCACACTCACTTGACACAAGAAGCAAAACATGTAAGGA GTTTTTTTTGTCTCTATAACTCTATGACAAAAAAAAGATGATAAAGTAGA AAGCCCGACAAAAACGCCTAAAACACGTCAAAAACCAGCCGGACCCACTC TTCTACTTAGCAGTATGTCTATATGGCTACAATGCCATATGCTTGTCTGA AAGTACTTACAGAGTTAACGAGGTAGTGCTTATACAGGTTCTGTCAATGT AATTAACAAATTGATATGTTCTGGGGGAAGTGAGAGACAATGTATCATCT GAGGTCATCAGACCCGAAGATTGAGGTACAGAAGATCGCCGTTTAATGCT CCTTGTCCTGCTTGTATCTGTAGGTGTTCATCTACCAGCCTGACGGCCAG CTGATCCGGCAGTTCGGCGGCAGCGGGCGCGGAGACCACGAGCTGTCTTA CCCCATATCTGTAGCCGTCGATTCGGCGTGGAACATCTTCGTGTCCGACC ACGACAGTCACTGTGTCAAGGTACATATGAGGCTTTCGTGATGCATCATT GCTGGTAGCCTCTACCGGCAGGCTCTAGAGGTGGCTGGAAGGTATTCTCC AAGCAGAGGTTTCGATCGGGGGCGCAAAAACGGGGGTCCAGAAACAAACA AATAAACACACAATCACACAAACGGGAAGGTGACAATCGTACGACAAATG TAACTGTGCCTTGGAACATTGATGATGTCACCGACAATGACTGCGCTCTT GTCTAGTCATGGACGTTTGTTTTTCTTTATCTTGTTGTGATTCCAGGTGT TCGCAATGATGGGGACGTTTCGGCTTAAGATTGCTAAGAAGGGCAGCAAG GATGGACAGCTGAAGAATCCTAAAGGTGAGGCTGTAATGTTATGGAATTC TAAAGGCGGTATAGGTTATAAACACGGTGAATGCCATTTCACATTTAACA GGCATGCCAAAGTTGCTAACGGTCTAGTTTCTGCTTTGAAAATGAAATGA ATCCACGTTGGCTGTTTATAGGAACTGAAAACTGGTACTAGAATCTTATT ACGATATATAAGATGTACTACTGGTAACGTTATATACAATGTGGTGTCTT GTATTACCTGCAACCAGTGCAAGGGAAGAACAATTCAACTGCAATAACAA TATTGTCGTATCGTAGTTCTTTCTGTTTAGTTATCGTCTGAAGAAAGTTT TCAGTACTCACACGGAGTCCCATTTTCTCGAAAGACTCATACTGTTATAC AGTACTGTAGTCGAAGTATTGAATACAGTGAAAACTATCCCGGATACGTT GACCTACTCGCCGACATACTCCCAACCACAGCCAGTGATCTTGCTCACGA TAACTGTCCCAACTATATTCTGGAGAAGTTCGGGAGGTCAAGGTCGGCTA TGCTTGACAGGAACTTTAGGGATCTCTAGGGAGAGTCTTTAAAATCTGAC GTTTCCATGACAACGTTTCTCATACAGGAATATGCCTAGACGCTGAAGGG AACATCATCGTGGCAGACAGTGGGAATGGACGGGTTTCCATGTTTGACTC GCACGGCAAGTTTTCCCGCCACCTGCTGACCTCTGACCAGGGCCTTGGAC ACCCCAGTCAAGTGACCTTAATGCCCGACGGCCGATTGGCGGTCATGGAT ATGGAGGCCAACCGAGGGCTCATATTCCATTACAAGTCTGACCAATGAGA GCACTTGTTTCATTACATGTACAGGGTGTTTGCACTCACGTGGCTGAGTG ACGTAGGTATTATCCGCCATGATGGTTGGTTGAAACTGGATGACGTCATG CACATTCAAACTTATAGGTCTCATTCTTCCAGGTTTAATCAACATGGCGA CTGTGACGTCATAGACAAGCTTCACATTCAAACGTCATATGAACACTGCA AAAAAAAAAATTCTTTAGCCTGCTCTTTGGGCAACCAAAAATAAAACGGT GACTTATACGGTAAGAGAGCTCTTTGGATTCAAAAGGGCCCTAAAATTGA ATTATATAGAAGTACTAATCCTTTAAGCTTCTCTGGTGTAATAGGACCAG TGAATCGGTGGTCTCTTCGTTTAATAACATCATATGCCATGATCTAACAT TTCATGTAGAACGCGTTTTATCAGGTACGATTGGTATGAAAGGTACGAAA GAGTGTGTGTATTGTTTTATTATATCCAGCCATCTTACTAGAAGTATAGA CAATTGCAGCAATATATGTATACGTACAAGGTATCATGTAGCGCATTAAC AGTAACTTATATAAAGAGGCAATATTTCTCTCAGCTTGTTACTTATAAAG CTCTCCTCAATAGATATTCACTGCACTCTTTAAAGTTTAATCTCCAAGCA CATCTATCGGTGGCAAGGCAGTATCAAAATGGCCAACGAGTATCCAAAGC TGGCCCTTTTGATGCTGCCTTGCCACCGATACTGTGCTTGGAGATTATGT TCTTTTAACTGGTGTTGGTATGATAGAGTGTTTTATACGCAAATGATTTA CACGATGTAATACGTGTCAATAGTATGATACATTTTGATACCCATCCAAA CATTTGAAGAAGAAAAAGAGAAAATCCTGCACATAATTGACACGTTCTCT GTGATTGTTTCTTTTCTAAGGCTTGTATCGGGTGTCGTTTTTTTAACAGA ACTTGACTGTGCAACACTGAATACAAGAGAGAAATGTACATATCAGTTTT CAAGTTCCTATTATTGTAATAACAAACGGTCAGTTGTAGAGTGGTA

Coding sequence (CDS) from alignment at Sc0000000:3412445..3418990+

>BlTCONS00000453 ID=BlTCONS00000453|Name=BlTCONS00000453|organism=Branchiostoma lanceolatum|type=CDS|length=1821bp|location=Sequence derived from alignment at Sc0000000:3412445..3418990+ (Branchiostoma lanceolatum)
ATGGACACCACCAACTTACAGAAAATCCGTGAGGAGCTCTTGTCCTGCGG
GATCTGTCTTGAGACGTTCACGGATCCAAGGGTCCTGCCCTGTCAGCACA
CCTTCTGTCAGAACTGTATCAAACAGATCAGCGCAGACAAGCGAATCTTC
CGATGCCCTACATGTCGAGAACAGGTCATACTCCCTAAAGATGGCGTCGA
GGGGTTCAAGAAGAATTTCGAGATCGCCAGTTTCTGTGAGAAGTTGGTGC
CGGTTGCCAAGAAGCCGCCTCCGCCGATAGCTGCAAAGCCGCGCACGGGA
GACAGGTGCGGGACACACAAGAAGGAGGTCCGCCGCTTCTACTGCCAGCA
GTGCAAGGTGGCCATCTGTAGCGAGTGCATTCTTGACATCCATCAGGGGC
ATTCTATATGCAGCGCGGCTCAAGCGGCAGGTGGCAGTCGCGACCGGATT
GGCGCAAATCTGAAGACGTGCAAAGAAAGAATCAAGATCCACGAAGACGT
CTCTAGCGGCGTCTCTGACAACGAGAAGAAGCTTGACGCCGAGAAAAAGG
CGGTAGAGAGCACCATACGGTCTTACCAGCAACAGTTGATCGACGACATC
AACAAGACGGCAGCGGTTTTACTTCAGGAGCTCGAGAGTCACTTCATGAC
GAAACAAATGCGTTTGATAGAGCAGAAGGACTCGGCACAGAGCACGCTCG
ACGAGGTGTCGGCCACACGAGACTGGGCGGAGAAGAGATTGGAGTTCACC
GAACCAGAGGTCATTGGGATGGAGGACGCCATTTGTAAGAAGTTAGAGGC
TGCCATAGCAATGAAGGAGTTGAGTGCGGACTACATTTCGCTGGAAATGG
ACTTCCAGCCAGCTATCACTCCAACAGGGAAGGCCCTCCTAGGACATCTG
AGGGAGAAAGGCTCTAACAAGGAACGACAGAATAGCCTCACGTCTGCAAA
TGCGACACCGCCAACGGTCATGAGAGGTATCAACCCTAACCAACCGGTAC
CAGGTCTAGTCTTCTTCGGACACGAAGGTTCGGGAGAGGGCCAACTAGCG
GAACCCAGAGGAATGACAGTCACCCCCGAGGGACGCATCTTTGTCATGGA
CGGCTGTAGTGACATAGAAGAAGGGGAGATTAAAGAGTACGACAACGCCG
GTCAGTTTGTGGGGAAGTCGTTCCAGCCGCACTACTTCCATCTCGCCGCG
GACAGCACGGGGCACCTGTTCTGCACGAGGCCGCAGCAGGAGACGGTGGA
CGTGCTGGACAAGCTCGGGACGTGCGTACAGACCTTCGGGAAGGGGCAGC
TCTCCTACCCGATGGGCATCGCCATCCACCCGGTGGGGGGTCAGGTACTG
GTCACGGACACGCAGAAGTGCAAGGTGTTCATCTACCAGCCTGACGGCCA
GCTGATCCGGCAGTTCGGCGGCAGCGGGCGCGGAGACCACGAGCTGTCTT
ACCCCATATCTGTAGCCGTCGATTCGGCGTGGAACATCTTCGTGTCCGAC
CACGACAGTCACTGTGTCAAGGTGTTCGCAATGATGGGGACGTTTCGGCT
TAAGATTGCTAAGAAGGGCAGCAAGGATGGACAGCTGAAGAATCCTAAAG
GAATATGCCTAGACGCTGAAGGGAACATCATCGTGGCAGACAGTGGGAAT
GGACGGGTTTCCATGTTTGACTCGCACGGCAAGTTTTCCCGCCACCTGCT
GACCTCTGACCAGGGCCTTGGACACCCCAGTCAAGTGACCTTAATGCCCG
ACGGCCGATTGGCGGTCATGGATATGGAGGCCAACCGAGGGCTCATATTC
CATTACAAGTCTGACCAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000453BlTCONS00000453-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000453-exon-Sc0000000-1564993656:3412445..3412586BlTCONS00000453-exon-Sc0000000-1564993656:3412445..3412586Branchiostoma lanceolatumexon
BlTCONS00000453-exon-Sc0000000-1564993656:3414309..3415608BlTCONS00000453-exon-Sc0000000-1564993656:3414309..3415608Branchiostoma lanceolatumexon
BlTCONS00000453-exon-Sc0000000-1564993656:3416016..3416184BlTCONS00000453-exon-Sc0000000-1564993656:3416016..3416184Branchiostoma lanceolatumexon
BlTCONS00000453-exon-Sc0000000-1564993656:3416618..3416764BlTCONS00000453-exon-Sc0000000-1564993656:3416618..3416764Branchiostoma lanceolatumexon
BlTCONS00000453-exon-Sc0000000-1564993656:3417041..3417119BlTCONS00000453-exon-Sc0000000-1564993656:3417041..3417119Branchiostoma lanceolatumexon
BlTCONS00000453-exon-Sc0000000-1564993656:3417722..3418990BlTCONS00000453-exon-Sc0000000-1564993656:3417722..3418990Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3412445..3418990 +
Properties
Property NameValue
GeneIDBlCUFF000236