BlTCONS00000448 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000448
Unique NameBlTCONS00000448
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3342491..3347386+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000448 ID=BlTCONS00000448|Name=BlTCONS00000448|organism=Branchiostoma lanceolatum|type=mRNA|length=4896bp|location=Sequence derived from alignment at Sc0000000:3342491..3347386+ (Branchiostoma lanceolatum)
GGCCGAAGTGACCTGTTGCAAAGTATGTCATATATTTTTACCGTTTTAGC
GCATATTTCTTCGGTTTTGACTGTCATAATATTCACAAGTTGTTGACGAA
ATTAATTTCCTCTTTTTTAATTTTGATAAAAGTGTATCTGTAAGGTTTGT
GTGGCAGAAAACGTATTTTATTTGCACCCCCCTCCCCACTTTTGAGTTAC
GGCAAGCAAGTTACGTGCAAGTTGGCACGTTCTATTTAAAAACTGCATGG
ACTAAACTAGCACAGATCACTGTTGTTGTCGATGTGTCTTGCGATTAAAA
CTACGATTTAAACCTCATTGGTTTTATAGACAGGTTTTGGAAGTCCAGAA
ATGAGCTGACGAAAACCGTTAGCTATGTTGGGGGGCCCGTCTATGCTGGC
GAGCCTGTTGGTCCGGTGTCGGTCGTGTTGTCGTCTGCAGAGGAGGACGT
TTTTCTGGAGAAGTCCGACCAAGTTGTCGTACGACGTGGTACGACCGGCG
GAGGTTTCGCCTCGCAGAGATGTACCCGGACATATCCAGGTGGGTAAGGA
CTTCTTTTATTTTGAGGCTACCAACTTCAACTAATTGATAAGGAATTGTT
ATGCGCAAAAATAACATCATTGTTTAAATTATCATGATCAATAATCTAAC
AATTTTTACAGAAACCGCCCTATGCAGATAGTGGTATCGCCCCGCTATGG
AGAGAAGACATTGAGATAAAAGATGAGGAAACGATACAAGGGATGAGGGC
AGCTGGAAAACTGGCCAGGAAGGTCCTAGTACTCGCAGGACAGAGTCTAC
AGGTGAATGAGATTGAGTCATACTGTAAATCTTCAAATATTTGCAGTGGT
TTTATTTTCGCGGTTCCTGTCTGCCGCAAAATCATGACACAGCAAATATG
ATTTTTGCTACAATATTATTTTGACCGCAAACATAAAACACAGTGAAAAC
CTCCTTTCTAGTACCCTTTACCATGGAATTTAATCCCCTCAAAAATAAAT
CAATTTACAGTACTGTTACATGTATCACCATCAATGAATGAGTCAATAAA
TATATTGCTAGAGTTTAGAGGTTCTAGAAAGTGGCCTTCTTCATGCAAGC
ATTCAGGATGGTACATTTAGTTCTTTTTACTTTTCCCACTAAGGTCATAT
TCTGCTAGAAATTTATTTCTTTTTCACACAGCATCTACCTTTCAAAGACA
TGAAAGTCCAGTTGTACATAATACAGTTTTCACAGTAGCTTCAGCAGTGC
TTGTTTGATATTTCAGGTCGGCATGTCAACAGATGAGATTGACAGGTTGG
TCCACGAGTCCACTGTCAGCCACGGAGCCTACCCCTCCCCGCTGAACTAC
GGCGGTTTCCCCAAGTCCGTCTGCACGTCCGTCAATAACGTGGCCTGTCA
TGGAATACCTGACAGGTTTGTTTATTTGTTTTTTGTTATTTCTGGTGATA
TCTTGCTTGTAAATGGAGAGTGTTTATCAATTAATGAAAAGTGAGAAGTA
AACTGAAAGTGTTCTCGAACCAGTAATCTCCAAGCAGATGTAAGGATCCG
GCTCACTCTTGATGTTTTTCACCAGTTTTTGCAACATTTTTTGTCAGTTA
GGTTCAGTCTTTTCCTTTTATTTCATTCCTTTCAGTCGACCCTTACAGAA
TGGTGATATCATCAACATAGATGTCACAGTAAGTCATGTTTTTTTTACAA
CTTCAGTCTGTTCAATTGTAGCTTAAACCAGACAGATATTGAAAAAGCCA
TGTGTAAACTAGTGTCCGTGTGAAGTTGTTTAGCGAATTGAAGTTCACTG
TCAATATCTTATAGATGTATACAAGCTACATTCTCTGACTTTGTAAACTT
AACATCTATTAGACAAATTCACTTTAACTTTTCAACAGAGCAACAAGAGA
AATGTTGCGATCTTTCCATCCAACTGCTTGGAGATTAGCAAACTAAGGTT
TTCTGTTTTTTCTTTCTTGCAGGTGTACTATAACGGTTTCCATGGAGACA
CGTCAGAGACATTCTTGGTGGGAAATGTAGACAAAGCTGGTTGCACCCTT
GTTGATGTTGCAAGGAGGTTTGTTTGTTTGAGATCTACAATTATAGTGAT
CTTACAATGACTAGTCTTGCACAGTAGCTAAAACATAATATGTGTGGCGA
TTGTATTTCATGGCATATTTCATAAGATGAAAATGAGTTTTTGTGTTGTT
TTCAATTTGCCGTTGAAACAGTTCAAAGTACCGGTATAAGTAGAAGGCAG
ACATGCAAAATGATTATGCTGTGTCATGAATTTGCAGTGGAGGGGACACC
ACAAAAAGAGAAACTCTGCAAATAATAATTCATTGTATATTTATAACTCT
AATACTTCAATCCTAGGTGCAGAGACAAGGCCATCACCATCTGCAGCCCA
GGAACACAGTTCTGCGAGATCGGCAGGACTATCAGGTATGTAAATGTACA
TGTAAGTGTGTGGGGACGATTCTTGTACAAACAGCCTCCAGAGTCATGTA
GCAGAAGGCACTTTTCTTTAATTTTCTGTGGCTTTTGTTTGCTTCACATA
ACTGGTAAGCTGTCTTTTGCTTAATCTAAGCATAATACACCAGATTTGTA
CAGTAGGCACAAGCTGCATTAGCCTGGGTGCCATCCTATTTCTACTGGGG
CTCCTACATTCGTTACCGTAATATCTTTTTAGGGTAGCGAATGTATGAGC
CCCGGTAGAAATAGGATGGCACCCAGGCTAAAGCTGCGTAAGTCTGGCCT
GTAAGGTTTTATCCACTTGCACTGAGATGGACCCTTTTTGGTAAGTGTTG
GGGGATCTTTATGTGGGTCTTAAAACCCTTTATGGTATTTTCCAGCTCTG
TTGTAAAAGAGGAGGGACTGACGGTGAGCCCAAACTTCATCGGACATGGG
ATAGGAGCCTTCTTCCATGGACCACCAGAGATTAATCATATAGGTTTGTA
TATTATTGGGGGTTTTGTTTTCATAAAGAAGTTAGATGTCTTTATTTAAC
CTCCTTGGTTTTCATGGTTTGGGCAGTGACTTCTTAATTCAAAATCATGA
GACTGCAAAAATGTTTTGTTCTACTGCTGTAACTACATATCAATTGTTTC
AACTGTGACCTTAAAACACCACGAAAACATGCTTTCCCCTTCCGCTGCAA
AACAGAATCTTCGCCCCCGCAACATAACAAAATGATGTTTCTCATACATC
AATATGCAGTGTTTACAAGAACAGGCCATTGGTAAAGTGTGATTTGCTGT
ATTTATTTTTTTCTGTATTTTTCTCCAGAAAACAGTCTTCCTGGCACAAT
GGAGACAGGCATGGCATTCACTATCGGTAAGAGAACATCACATTTAGACA
TTGCCTATAACAATTAGTAGTGGGTAGAGTGTTTGCCTTGCATGTAGTAG
CCGAGTCATACCAAAGACCAATGGTACATAGTGCTGCTTTCTCTACACTC
AGCACTTATCAGAAAGAGTATGGTAGGTGAACACATAGCAGTCGACTGTC
TCCCTGCTGTGAGTGATTACCCAAGAGTTTTGTGGCCCAAGGGCTGTAGA
AATGGAGTTTCAGACAAAAAATGGTTGTAGACAAAATGACTTGTATCTAA
ATCAATGATCAGCCAAGATTCCAATTTGTTGTTTTCCAGAGCCCATAATC
ATGGAGGGGTCGCACCAGATAACTATCCTGGAGGATGGATGGACGGCTGT
GTCTGTGGACAATGGCAGGTGAGTTAGATGAGCATCTCTTTGGATATTGA
AGATTTCTTTATCTCAACCAGTAAAATCTCACCTGCTTACGTGTAGATGG
CTATCAGACACCTTCCCCTGTGAGCTTCTGGCCTGAGTAATGCTTCTTGC
TGCTATAAGTAGCTGAAGTAAGTGTTGCTTTTGCAGCTACATGTAGAACA
CGATTCCAAACATGGCTGAGTGAGATTTTACTGGTTGTGAAAGGTGAGAT
TTTGTGGTTGCGAAAAAGAAATCTCCAATATCCTATGGTCTACCAACCTG
ATGAAGTTATTTTTGGTGAGCATCTTTTTGTTTACAATCCAGGTCTGAGC
TTCTGTATCTGTAGTGTACAGACGGTATAAAACTGCCCCTCGGCGTAACA
AACCAGCTTTGCAGGCACACTTTGGCAGAAGCTTGTTACATCACACCAAA
CGACCTGTCACACCTAACCTTTACAAATCTACATTGTAACTCCAAGTGTT
GTTTAAAGCTTGATGCCCTTACCATACTTTCTCACAATAAGTTCTACTCT
TCGATGCTTCTACGAAGAAAACCTTGCTTGTCCATTGTAGAAGATTCCTT
GGCACTAAGGCCAGTAAATAATTTTTTATGCATGTGTTTGTTCAATTTTT
GTTGGTTTTAATGTGAACTCTTTTTAATGTCTTTGTTCTCCAGGTCTGCC
CAATTTGAACACACTGTTGTCATCACAGAGGAGGGAGCAGAAATCCTCAC
CGCTTAGGTTTTATCAATACAGACTCAGGAATGCTATTGATAAACAATGT
GGGGGAATGTTTAGGCGTGTACAAATCTATGCATCAAAGAATGCCATCAC
AAAGGGAAGGTATACAGGAGTGCATTAGTTATGGCATTCATAATTGGGGG
GCTTGTGTAGCTCTTCTCAAACACAGGACCTCCATTTAACATTCTATTCA
AGGGACCGAAGCTAGGTAATAGTACATGTACTTATTTCTACCCGAGTGAA
GTGAGGAAAGTCGTGTAATGTGCCTTTCTAAAGGGCACAACATCAATGTC
AGGGGAAGTACACGTAACTATGTCTTTTCAAGACCAAAGGTCATGATATT
CATGACGAATATCCTACCTGTACTTATGACCACAAATAGATTGATGCAAT
TTTTATAAATCCTTTAGCCTTTCCTGTGGTGCCATACTATGTAAGG

Coding sequence (CDS) from alignment at Sc0000000:3342491..3347386+

>BlTCONS00000448 ID=BlTCONS00000448|Name=BlTCONS00000448|organism=Branchiostoma lanceolatum|type=CDS|length=906bp|location=Sequence derived from alignment at Sc0000000:3342491..3347386+ (Branchiostoma lanceolatum)
GCCGAAGTGACCTGTTGCAAAAGGAGGACGTTTTTCTGGAGAAGTCCGAC
CAAGTTGTCGTACGACGTGGTACGACCGGCGGAGGTTTCGCCTCGCAGAG
ATGTACCCGGACATATCCAGAAACCGCCCTATGCAGATAGTGGTATCGCC
CCGCTATGGAGAGAAGACATTGAGATAAAAGATGAGGAAACGATACAAGG
GATGAGGGCAGCTGGAAAACTGGCCAGGAAGGTCCTAGTACTCGCAGGAC
AGAGTCTACAGGTCGGCATGTCAACAGATGAGATTGACAGGTTGGTCCAC
GAGTCCACTGTCAGCCACGGAGCCTACCCCTCCCCGCTGAACTACGGCGG
TTTCCCCAAGTCCGTCTGCACGTCCGTCAATAACGTGGCCTGTCATGGAA
TACCTGACAGTCGACCCTTACAGAATGGTGATATCATCAACATAGATGTC
ACAGTGTACTATAACGGTTTCCATGGAGACACGTCAGAGACATTCTTGGT
GGGAAATGTAGACAAAGCTGGTTGCACCCTTGTTGATGTTGCAAGGAGGT
GCAGAGACAAGGCCATCACCATCTGCAGCCCAGGAACACAGTTCTGCGAG
ATCGGCAGGACTATCAGCTCTGTTGTAAAAGAGGAGGGACTGACGGTGAG
CCCAAACTTCATCGGACATGGGATAGGAGCCTTCTTCCATGGACCACCAG
AGATTAATCATATAGAAAACAGTCTTCCTGGCACAATGGAGACAGGCATG
GCATTCACTATCGAGCCCATAATCATGGAGGGGTCGCACCAGATAACTAT
CCTGGAGGATGGATGGACGGCTGTGTCTGTGGACAATGGCAGGTCTGCCC
AATTTGAACACACTGTTGTCATCACAGAGGAGGGAGCAGAAATCCTCACC
GCTTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000448-exon-Sc0000000-1564993656:3342491..3342512BlTCONS00000448-exon-Sc0000000-1564993656:3342491..3342512Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3342931..3343029BlTCONS00000448-exon-Sc0000000-1564993656:3342931..3343029Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3343152..3343292BlTCONS00000448-exon-Sc0000000-1564993656:3343152..3343292Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3343757..3343905BlTCONS00000448-exon-Sc0000000-1564993656:3343757..3343905Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3344126..3344168BlTCONS00000448-exon-Sc0000000-1564993656:3344126..3344168Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3344463..3344557BlTCONS00000448-exon-Sc0000000-1564993656:3344463..3344557Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3344857..3344925BlTCONS00000448-exon-Sc0000000-1564993656:3344857..3344925Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3345336..3345433BlTCONS00000448-exon-Sc0000000-1564993656:3345336..3345433Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3345769..3345816BlTCONS00000448-exon-Sc0000000-1564993656:3345769..3345816Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3346130..3346208BlTCONS00000448-exon-Sc0000000-1564993656:3346130..3346208Branchiostoma lanceolatumexon
BlTCONS00000448-exon-Sc0000000-1564993656:3346884..3347386BlTCONS00000448-exon-Sc0000000-1564993656:3346884..3347386Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000448BlTCONS00000448-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3342491..3347386 +
Properties
Property NameValue
GeneIDBlCUFF000233