BlTCONS00000445 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000445
Unique NameBlTCONS00000445
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3342463..3347386+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000445 ID=BlTCONS00000445|Name=BlTCONS00000445|organism=Branchiostoma lanceolatum|type=mRNA|length=4924bp|location=Sequence derived from alignment at Sc0000000:3342463..3347386+ (Branchiostoma lanceolatum)
GAAGGTCAAAGGTCGGGGACAACATGGCGGCCGAAGTGACCTGTTGCAAA
GTATGTCATATATTTTTACCGTTTTAGCGCATATTTCTTCGGTTTTGACT
GTCATAATATTCACAAGTTGTTGACGAAATTAATTTCCTCTTTTTTAATT
TTGATAAAAGTGTATCTGTAAGGTTTGTGTGGCAGAAAACGTATTTTATT
TGCACCCCCCTCCCCACTTTTGAGTTACGGCAAGCAAGTTACGTGCAAGT
TGGCACGTTCTATTTAAAAACTGCATGGACTAAACTAGCACAGATCACTG
TTGTTGTCGATGTGTCTTGCGATTAAAACTACGATTTAAACCTCATTGGT
TTTATAGACAGGTTTTGGAAGTCCAGAAATGAGCTGACGAAAACCGTTAG
CTATGTTGGGGGGCCCGTCTATGCTGGCGAGCCTGTTGGTCCGGTGTCGG
TCGTGTTGTCGTCTGCAGAGGAGGACGTTTTTCTGGAGAAGTCCGACCAA
GTTGTCGTACGACGTGGTACGACCGGCGGAGGTTTCGCCTCGCAGAGATG
TACCCGGACATATCCAGGTGGGTAAGGACTTCTTTTATTTTGAGGCTACC
AACTTCAACTAATTGATAAGGAATTGTTATGCGCAAAAATAACATCATTG
TTTAAATTATCATGATCAATAATCTAACAATTTTTACAGAAACCGCCCTA
TGCAGATAGTGGTATCGCCCCGCTATGGAGAGAAGACATTGAGATAAAAG
ATGAGGAAACGATACAAGGGATGAGGGCAGCTGGAAAACTGGCCAGGAAG
GTCCTAGTACTCGCAGGACAGAGTCTACAGGTGAATGAGATTGAGTCATA
CTGTAAATCTTCAAATATTTGCAGTGGTTTTATTTTCGCGGTTCCTGTCT
GCCGCAAAATCATGACACAGCAAATATGATTTTTGCTACAATATTATTTT
GACCGCAAACATAAAACACAGTGAAAACCTCCTTTCTAGTACCCTTTACC
ATGGAATTTAATCCCCTCAAAAATAAATCAATTTACAGTACTGTTACATG
TATCACCATCAATGAATGAGTCAATAAATATATTGCTAGAGTTTAGAGGT
TCTAGAAAGTGGCCTTCTTCATGCAAGCATTCAGGATGGTACATTTAGTT
CTTTTTACTTTTCCCACTAAGGTCATATTCTGCTAGAAATTTATTTCTTT
TTCACACAGCATCTACCTTTCAAAGACATGAAAGTCCAGTTGTACATAAT
ACAGTTTTCACAGTAGCTTCAGCAGTGCTTGTTTGATATTTCAGGTCGGC
ATGTCAACAGATGAGATTGACAGGTTGGTCCACGAGTCCACTGTCAGCCA
CGGAGCCTACCCCTCCCCGCTGAACTACGGCGGTTTCCCCAAGTCCGTCT
GCACGTCCGTCAATAACGTGGCCTGTCATGGAATACCTGACAGGTTTGTT
TATTTGTTTTTTGTTATTTCTGGTGATATCTTGCTTGTAAATGGAGAGTG
TTTATCAATTAATGAAAAGTGAGAAGTAAACTGAAAGTGTTCTCGAACCA
GTAATCTCCAAGCAGATGTAAGGATCCGGCTCACTCTTGATGTTTTTCAC
CAGTTTTTGCAACATTTTTTGTCAGTTAGGTTCAGTCTTTTCCTTTTATT
TCATTCCTTTCAGTCGACCCTTACAGAATGGTGATATCATCAACATAGAT
GTCACAGTAAGTCATGTTTTTTTTACAACTTCAGTCTGTTCAATTGTAGC
TTAAACCAGACAGATATTGAAAAAGCCATGTGTAAACTAGTGTCCGTGTG
AAGTTGTTTAGCGAATTGAAGTTCACTGTCAATATCTTATAGATGTATAC
AAGCTACATTCTCTGACTTTGTAAACTTAACATCTATTAGACAAATTCAC
TTTAACTTTTCAACAGAGCAACAAGAGAAATGTTGCGATCTTTCCATCCA
ACTGCTTGGAGATTAGCAAACTAAGGTTTTCTGTTTTTTCTTTCTTGCAG
GTGTACTATAACGGTTTCCATGGAGACACGTCAGAGACATTCTTGGTGGG
AAATGTAGACAAAGCTGGTTGCACCCTTGTTGATGTTGCAAGGAGGTTTG
TTTGTTTGAGATCTACAATTATAGTGATCTTACAATGACTAGTCTTGCAC
AGTAGCTAAAACATAATATGTGTGGCGATTGTATTTCATGGCATATTTCA
TAAGATGAAAATGAGTTTTTGTGTTGTTTTCAATTTGCCGTTGAAACAGT
TCAAAGTACCGGTATAAGTAGAAGGCAGACATGCAAAATGATTATGCTGT
GTCATGAATTTGCAGTGGAGGGGACACCACAAAAAGAGAAACTCTGCAAA
TAATAATTCATTGTATATTTATAACTCTAATACTTCAATCCTAGGTGCAG
AGACAAGGCCATCACCATCTGCAGCCCAGGAACACAGTTCTGCGAGATCG
GCAGGACTATCAGGTATGTAAATGTACATGTAAGTGTGTGGGGACGATTC
TTGTACAAACAGCCTCCAGAGTCATGTAGCAGAAGGCACTTTTCTTTAAT
TTTCTGTGGCTTTTGTTTGCTTCACATAACTGGTAAGCTGTCTTTTGCTT
AATCTAAGCATAATACACCAGATTTGTACAGTAGGCACAAGCTGCATTAG
CCTGGGTGCCATCCTATTTCTACTGGGGCTCCTACATTCGTTACCGTAAT
ATCTTTTTAGGGTAGCGAATGTATGAGCCCCGGTAGAAATAGGATGGCAC
CCAGGCTAAAGCTGCGTAAGTCTGGCCTGTAAGGTTTTATCCACTTGCAC
TGAGATGGACCCTTTTTGGTAAGTGTTGGGGGATCTTTATGTGGGTCTTA
AAACCCTTTATGGTATTTTCCAGCTCTGTTGTAAAAGAGGAGGGACTGAC
GGTGAGCCCAAACTTCATCGGACATGGGATAGGAGCCTTCTTCCATGGAC
CACCAGAGATTAATCATATAGGTTTGTATATTATTGGGGGTTTTGTTTTC
ATAAAGAAGTTAGATGTCTTTATTTAACCTCCTTGGTTTTCATGGTTTGG
GCAGTGACTTCTTAATTCAAAATCATGAGACTGCAAAAATGTTTTGTTCT
ACTGCTGTAACTACATATCAATTGTTTCAACTGTGACCTTAAAACACCAC
GAAAACATGCTTTCCCCTTCCGCTGCAAAACAGAATCTTCGCCCCCGCAA
CATAACAAAATGATGTTTCTCATACATCAATATGCAGTGTTTACAAGAAC
AGGCCATTGGTAAAGTGTGATTTGCTGTATTTATTTTTTTCTGTATTTTT
CTCCAGAAAACAGTCTTCCTGGCACAATGGAGACAGGCATGGCATTCACT
ATCGGTAAGAGAACATCACATTTAGACATTGCCTATAACAATTAGTAGTG
GGTAGAGTGTTTGCCTTGCATGTAGTAGCCGAGTCATACCAAAGACCAAT
GGTACATAGTGCTGCTTTCTCTACACTCAGCACTTATCAGAAAGAGTATG
GTAGGTGAACACATAGCAGTCGACTGTCTCCCTGCTGTGAGTGATTACCC
AAGAGTTTTGTGGCCCAAGGGCTGTAGAAATGGAGTTTCAGACAAAAAAT
GGTTGTAGACAAAATGACTTGTATCTAAATCAATGATCAGCCAAGATTCC
AATTTGTTGTTTTCCAGAGCCCATAATCATGGAGGGGTCGCACCAGATAA
CTATCCTGGAGGATGGATGGACGGCTGTGTCTGTGGACAATGGCAGGTGA
GTTAGATGAGCATCTCTTTGGATATTGAAGATTTCTTTATCTCAACCAGT
AAAATCTCACCTGCTTACGTGTAGATGGCTATCAGACACCTTCCCCTGTG
AGCTTCTGGCCTGAGTAATGCTTCTTGCTGCTATAAGTAGCTGAAGTAAG
TGTTGCTTTTGCAGCTACATGTAGAACACGATTCCAAACATGGCTGAGTG
AGATTTTACTGGTTGTGAAAGGTGAGATTTTGTGGTTGCGAAAAAGAAAT
CTCCAATATCCTATGGTCTACCAACCTGATGAAGTTATTTTTGGTGAGCA
TCTTTTTGTTTACAATCCAGGTCTGAGCTTCTGTATCTGTAGTGTACAGA
CGGTATAAAACTGCCCCTCGGCGTAACAAACCAGCTTTGCAGGCACACTT
TGGCAGAAGCTTGTTACATCACACCAAACGACCTGTCACACCTAACCTTT
ACAAATCTACATTGTAACTCCAAGTGTTGTTTAAAGCTTGATGCCCTTAC
CATACTTTCTCACAATAAGTTCTACTCTTCGATGCTTCTACGAAGAAAAC
CTTGCTTGTCCATTGTAGAAGATTCCTTGGCACTAAGGCCAGTAAATAAT
TTTTTATGCATGTGTTTGTTCAATTTTTGTTGGTTTTAATGTGAACTCTT
TTTAATGTCTTTGTTCTCCAGGTCTGCCCAATTTGAACACACTGTTGTCA
TCACAGAGGAGGGAGCAGAAATCCTCACCGCTTAGGTTTTATCAATACAG
ACTCAGGAATGCTATTGATAAACAATGTGGGGGAATGTTTAGGCGTGTAC
AAATCTATGCATCAAAGAATGCCATCACAAAGGGAAGGTATACAGGAGTG
CATTAGTTATGGCATTCATAATTGGGGGGCTTGTGTAGCTCTTCTCAAAC
ACAGGACCTCCATTTAACATTCTATTCAAGGGACCGAAGCTAGGTAATAG
TACATGTACTTATTTCTACCCGAGTGAAGTGAGGAAAGTCGTGTAATGTG
CCTTTCTAAAGGGCACAACATCAATGTCAGGGGAAGTACACGTAACTATG
TCTTTTCAAGACCAAAGGTCATGATATTCATGACGAATATCCTACCTGTA
CTTATGACCACAAATAGATTGATGCAATTTTTATAAATCCTTTAGCCTTT
CCTGTGGTGCCATACTATGTAAGG

Coding sequence (CDS) from alignment at Sc0000000:3342463..3347386+

>BlTCONS00000445 ID=BlTCONS00000445|Name=BlTCONS00000445|organism=Branchiostoma lanceolatum|type=CDS|length=993bp|location=Sequence derived from alignment at Sc0000000:3342463..3347386+ (Branchiostoma lanceolatum)
ATGTTGGGGGGCCCGTCTATGCTGGCGAGCCTGTTGGTCCGGTGTCGGTC
GTGTTGTCGTCTGCAGAGGAGGACGTTTTTCTGGAGAAGTCCGACCAAGT
TGTCGTACGACGTGGTACGACCGGCGGAGGTTTCGCCTCGCAGAGATGTA
CCCGGACATATCCAGAAACCGCCCTATGCAGATAGTGGTATCGCCCCGCT
ATGGAGAGAAGACATTGAGATAAAAGATGAGGAAACGATACAAGGGATGA
GGGCAGCTGGAAAACTGGCCAGGAAGGTCCTAGTACTCGCAGGACAGAGT
CTACAGGTCGGCATGTCAACAGATGAGATTGACAGGTTGGTCCACGAGTC
CACTGTCAGCCACGGAGCCTACCCCTCCCCGCTGAACTACGGCGGTTTCC
CCAAGTCCGTCTGCACGTCCGTCAATAACGTGGCCTGTCATGGAATACCT
GACAGTCGACCCTTACAGAATGGTGATATCATCAACATAGATGTCACAGT
GTACTATAACGGTTTCCATGGAGACACGTCAGAGACATTCTTGGTGGGAA
ATGTAGACAAAGCTGGTTGCACCCTTGTTGATGTTGCAAGGAGGTGCAGA
GACAAGGCCATCACCATCTGCAGCCCAGGAACACAGTTCTGCGAGATCGG
CAGGACTATCAGCTCTGTTGTAAAAGAGGAGGGACTGACGGTGAGCCCAA
ACTTCATCGGACATGGGATAGGAGCCTTCTTCCATGGACCACCAGAGATT
AATCATATAGAAAACAGTCTTCCTGGCACAATGGAGACAGGCATGGCATT
CACTATCGGTCTGCCCAATTTGAACACACTGTTGTCATCACAGAGGAGGG
AGCAGAAATCCTCACCGCTTAGGTTTTATCAATACAGACTCAGGAATGCT
ATTGATAAACAATGTGGGGGAATGTTTAGGCGTGTACAAATCTATGCATC
AAAGAATGCCATCACAAAGGGAAGGTATACAGGAGTGCATTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000445-exon-Sc0000000-1564993656:3342463..3342512BlTCONS00000445-exon-Sc0000000-1564993656:3342463..3342512Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3342820..3343029BlTCONS00000445-exon-Sc0000000-1564993656:3342820..3343029Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3343152..3343292BlTCONS00000445-exon-Sc0000000-1564993656:3343152..3343292Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3343757..3343905BlTCONS00000445-exon-Sc0000000-1564993656:3343757..3343905Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3344126..3344168BlTCONS00000445-exon-Sc0000000-1564993656:3344126..3344168Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3344463..3344557BlTCONS00000445-exon-Sc0000000-1564993656:3344463..3344557Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3344857..3344925BlTCONS00000445-exon-Sc0000000-1564993656:3344857..3344925Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3345336..3345433BlTCONS00000445-exon-Sc0000000-1564993656:3345336..3345433Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3345769..3345816BlTCONS00000445-exon-Sc0000000-1564993656:3345769..3345816Branchiostoma lanceolatumexon
BlTCONS00000445-exon-Sc0000000-1564993656:3346884..3347386BlTCONS00000445-exon-Sc0000000-1564993656:3346884..3347386Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000445BlTCONS00000445-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3342463..3347386 +
Properties
Property NameValue
GeneIDBlCUFF000233