BlTCONS00000442 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000442
Unique NameBlTCONS00000442
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3335844..3341659+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000442 ID=BlTCONS00000442|Name=BlTCONS00000442|organism=Branchiostoma lanceolatum|type=mRNA|length=5816bp|location=Sequence derived from alignment at Sc0000000:3335844..3341659+ (Branchiostoma lanceolatum)
CATCTCATCCAACCAACCAAGCAGGGTCTTAGGTTAGTGGCAGCCAATCT GTGTTTACGTTGCATTAAGCCAAGAGAAATGACTTACTAAAAAAACGAAG GAGAAATCACTAAGACGAACTAAATTCTTCTTACTGTGATGCTTGGATTT AAGTTGTAACTTGTCTGTTTATGCTTTCATCCTCAGGAAATCTTAGAAGT CCCCATTTTCACATTGGATTTTCTAAAACTCTGTACTTTCCTCACGGTTA CCTTCGCTCCCTTATATCACCCTCATACCTTTTTGAGAAAAAAACTGTAG CCAATGACAGATCATGCTCATAAGATCTGATTAGATATAGAAGTCAACGA ATAATGTATCTGTTGCAGATTATGACTACTCCAGTGAGAGTGACCAGGAC CCTATCCAGGTGGACCAGGCGTGGAGGGGGGATGGAGACAGTGATGCTGA GAGCATCGACAGTGAACAGGAGGACCCTCTCAAGTAAGTACACAACTTTT ATGAACCCACTGTGAACCAACCCACTTGACCACTGCCACTTAGAACCCTA TTTTAGAAGTAGACTTAGTAAGTAGTTTGGTTGCCTCACTGGTGCTAAGA GTCCAGGTCCTGGAGGTGACAGACCAAATATGAAGCTCCCTTTATAGCAT AGAAAAAGCAAGAACGTCACCACAACTCAAGCTCAGTTCACATGTCAATG AAAATTCAGTTTACATAAATCAATGAAAATTGTAAAAAATAATTCTGCTG TGAGATCCTAGAAGTTTTTTTTAATGGGTGTGGTGTGTAAAGGAAACTCA GTTTGTGGTATAACATTGCTTTTCTCGATTTTATAAACAACTGTTTTCTC CCCAGGCATCGTAGTACTAGTAATCACTCAGTCATCAGAAATATTGTAGA GCCGCAAGGATATTTGGGTTTTCTTTCACAGAACCATGTTCTTTTTACAT ACCAGCCACAATCTTCCTTAGGCCTTTAATGACTTAACCTAGAAACACCA AGGGAATAACAAAAAGTGGCAACATTGGCCTGGTGGTCTTTACGTAGAAG TGGTCACTTGTAGAGGTTTGACTGTATATCTGTTTTCTCCCCAGACATGC TGGAGTGTACACGGCAGAGGAGGTTGCCCTGATCACAAGGGAGAAGTTGA TCAGGCTGCAGTCCCTGTACATCGACCAGTTCAAGAGGTTGCAGCACCTT TTGAAGGAAAAGAGACGCAAGTACCTCACCGCCAAGAAAATGGAGCAGGA CATCCTTGGTAAGTCTTAAACACCCCTATTTGTTACTTGGGGTGATCTGA TAACTGATGATGCTGTACTGGGCGAGTGGGATGTGCCAATGAATATGGGG GTGTTAATGTCAGAAAATATTGGATGGCATCCAGCAACTTTGTTTTTGGA AAAAAATTCCAAACCCGTTTATGTTTAAGTATATGTGAGTATTACTGTAA ATTCGTTAATTTTCACGTTAGAAGGGGAAAGAGGTTTTTCACGGTGTGGT AAGTTCTCAGTTGAAACAATTCTATGGTACAGTAGTAATACATGCTTATT CACAATGGGGAGCTGAAAATAAAACCGCCCCAAATGTTTCAAGATTTACA GTAATAGCGACAACATTGTATAACTCCAATAACTGTTTAATACTAATATC TATCATAACAACCTTTATCTAAATGGATTTTTAAAAAAGGCTGATTTTTA CAAGTATCATTGATGTTTTTTCTAGGCTCTGTCATTCCTTCTACTGACGA AGACTTGGACAGCTCTGACAAGGAGAAACTCCGCACCCTCCGCGCTACCA AGCGATATCGTAAACGCCACGGAGCCGAGGCGCTTCTCCAGAGCAGGTCC AACGAGAGGAGGATCGCTGCGTCCGAGAGCCATCTGGTCAGCAAACCCAC CCCTCCGCCGCGCTGTAACATCATTATAGACGGAGAGAGATGCAGCCACA ACGTGGTGCCCATGTCCAGATTCTGTCTCCAGCGTATCCTTTTGGGTTGA AGTTATTAGTTCAAATCCTCCCCACACCTTTCTGTGTGTAGAGGCAGTGC CCATCTATGTTTCTATAGCCCTCAGGCCACAATATTAGTGGACTAGTCCA CTGGTAGCCTGAATTCAATCAAGCCTCCTGTGACCGCTCGCCGTCCTGTA ATCGGCTCCCAACCCAAGAGGGGAGAGAAACCCTCGGATAGCTGGAGTTT GCGTTATACAGACTAAGTCCACTGGTAGCGGCATTTCTTTCATCTCCCAT ACTGTTATCCACGAGGGCTGTGTACCTACTTGTGAACACCGGGCCTGAAC TGAACTGGTCCAAGAAAGCCTAAACGTCTGGAAACAAGTCCGGACTTGCA AAAAAAATATGATTTTAAACCTTCTATAGATCATGAAATATGCACTGGAA AAAGACGAAAACATTGCTTTTTTTTTGTTTATTGCTGAACTTTAGAGCAG CTAACTCATACATTGATAGATAAGGCTGTCCAGATGGTGGGTTGACCTTT GATATGTGAACCTTAGCCTTTGTGTGAACCTTAACCCCTAACCCCCAGAC GTCCTCCATGACCCACACCAGGTCCTCTTCCAGCACTGCTCCCACTCGAC AGGAGGGATCGAGATCTGTGACAAGCCGGTTGCCATGGGGATGGACCGAA CCACCTGTGTTCTACACTCACCCCTCCCTCCGCAGAGGTTCAAAATGCCA GAGAAAGAGGAGGAAATGATAGTGGAGGTAGGGGTTGTTGATAACATGAT ATCTTTAGACACTCCCTCACTCTCTCCCATAGCTTAGTCAGCTGTCGGGG CAGCATAGCTTTCACTGAAGGCACTCCACTGCTGGTGGTCTTCCACCAGT CTGGTCATCTGGTTGGCCGAATGACCGGTCCACTCCTTTAGATCTGTGAT CCACGACCGACGGGGACGTCCCCGCGGCCGTGCACCTTCCGCTTTTCCCT GAAGGATTGTGTGTGAGAGAGTGCCTTTTGCCCTAGTCACATGCCCAAAC CACTTTTTTTTTAGACACCTTTCTGTTTAATTTGTTATTTTGAATACTAA ATGTACTTCAATAGTGTAGAATACCAAACTTTGCAAGTAATCATTAATGA GACATTCTTTATCCAAGGAGGTAAAGTCAGACATTATGCAGATTGATGTG TCAAATTTTCATCTTTGTTTTCCTAAAACGAGTAGTTCAGGTACAAGTAC AGGTCCAGACTTATACCTAAATCCATGTACCTGTAACTGTACCATAAAAT TTAGTATGTACACAGCTTTAACGACGAGTTATTGCAACATCATTAATGAG ACTCCTTTACTCAATCAAGGAGGTGAAGCCAGACGTTATGCAGATCGATG TAGAAGAAGATGACAGCAAGCCTGTGGTGGTCACTGCTTCAGAGGGCAAG GGTCAAACACGGGACCTAACAGAAGCTGCCACCATAAGTGGTGCAGAGGG GACCAAGGAAGAATCATTGGGGAACCAGGAAACAGCAACTGTGGGAGATG AAACACCAGCTACCTCCAACCAACCTACCACTCAGGCATCTCAACAAGTG AGTATATCTCTCTATATTATGCAAATAGACAATGTATTTGCATAGGAACT TTTCTTTCATAAACAACATATTCTGCTTTATACAAAGTAAACTACTGAAA CAGGGTTCTCCCCAGAAATTTAGAGTATACCGGAGGAGGGTGCGAAGCAC CCGAGGCGACGCGCCTTTGCGCGTCGCTGGGGGGTGGCCCGGAGGGGGGT TTCCCCCCCTCCGGAGGAGGAAGCTTTGGCATTTGGGTTGTTTCAAGTTC AAATGGAGGCCATTTCCTACAACTTCAGGTTGACTTCTTCCCAACAATCA CAAACAAAAGAGGCAGGAAAAATCTTCAAAGTTCAAGCCAACACTATTTT GAAAACACATATACTTTATTACATATGTTTCTGACATCATCTTGATGGCT TTTGCTTAATCTTCGATTCATCCCTGTCACATAAACAGAAAAAAGCAAGC TAACCCTCAATCTATGATACAAACTGACACAAAAATTCTGAATTTTTGGG AAAAATTGGGCATAGGTTCCCCGCTATGACCCCTTACCGGGGGCCAACGG TGCCATCAAGTTCAACAAGAAGAATAGTATACACAACTCCTAGTCATGTA TTTTCTACTTGGAACTTGAGGCAAATCACAATGGGAAAAAGATGTGGAGA ACATTGGGCAAAACCTTCTCATTTTGATATTAGTATTAATAATTTTTTCT TCAAATTGATATGAATAACACATCAAAAACTATAAAAAAAAGAAGACAAC AGAAACTTGTGCATTTTCTGATATACAGTCTGTAGAATGTAATGAATTTT CCTGAAGAATTTCACACATCAAAATCCCAACATACACAAAAGTTTGCTGT AACAGTGTAAGTGTAAAATCTCCAGCTACAAGTCTTTGCAATGGCCCCTT TAGTCTGAGAATGGAATGTTCCATTCCTCCTGTAGAATTTAAGTGGATTT GCATTTGTAGCCGCAGATTCAAACTAGATACAAATTGTATTTGACGTTCA AAAAACCCATNAAAAAAAAGGGCAGAATTTTCGTCAGCTAGGAGACCATG TGCTCCCAACAAACTGAACAAAGTTCTGCATTTTTCATTGCTTTTGGGAC TAAAAACACACACCGAATGTTAAACAAAACCCCACACGATGTTTTCAAAT GTAGTAGTGCTACAATGAACCAGGCATTTTCCTGCTGCTTGCCGATCTTG ACTGAATTTTGAGGCACGCACTGGCGGTAAGGTGATTTTCTCAAACGTGT ACTAGTACTACTACAGCTCCAAATAAATTTCTCATTTCTTTCTGACCCCG TTGGCTGTGATTCATGAAGTAAATACAGACAATTAGCATTGTTTGCATGG ATTTAGGGGAGTCGGATGCTAAACCAATAATGAGATTCTTTTGTCATCGG CGTTGTAGCGAAGTGGTCCATTGTTTTTCGAGTATCCGATCCATTCACAT GTACAAGTTTTTACAGACAATGCCGACGGAAAAAGTGACGCCGCTCGGCC CAGAAATCTGCGTATTTTCATGAATTTTTGCCAGATTATCCAGGAAAATA GGGAAGAAACACCCTAGATTTGAAAATGAGTATACCGGCGCAGAGCTAGG AGTATACCGGCGGCGCGCCGTTGTTCCGTTGTCTGGGGAGAACCCTGACT GAAACCTTGAAATGGTCGCAGTGGTGTTTTCGTGGTGACCTCTACTGGGC AAATATGCCTTTCCAATGTACCATAAATCCATGTATTTTATGCGGGGAAT TGATTTAACGGTAGAAGGGGAAAGGAGTTTTTCGCTGTGATTGAATTTTA CAGTTAAAACAATTTTGTATCACAATATGAATACGAAACTCTTGTCATTA TTCCATGGTAAGAGGTCTCTGCTAAAACAGCAAAAATAAAACCACTGTGA ACATTTCAAGATTTACAGTATGTGTTTGCTAGCAGTCTTTATTTCATATG TTTACTGTTTTTTGTCTGATTTCAGGATTCCATGGATACAAATGGCGAAA CATAAACAGCGACATTCTCATCAGTTTGGAGAAGATGATAGCAAATCCAT GATGTGTATACATATAAAATATATGGACCTACTTTGGCAAAGAAACTAAA TAGAACCTTTGTTACTACAGTAGATTCCGTATATCTGTATAGCCTGTATA TTATTTTGTTACCATACGAAGACCATATGCTTGTGTCGAATATATTATGT TAATGAATACATGTATATTGTGTTCTCAATAACAAGGTTACAAATAAAGA TTTTGTTTGAATGATA

Coding sequence (CDS) from alignment at Sc0000000:3335844..3341659+

>BlTCONS00000442 ID=BlTCONS00000442|Name=BlTCONS00000442|organism=Branchiostoma lanceolatum|type=CDS|length=1005bp|location=Sequence derived from alignment at Sc0000000:3335844..3341659+ (Branchiostoma lanceolatum)
ATCTCATCCAACCAACCAAGCAGGGTCTTAGATTATGACTACTCCAGTGA
GAGTGACCAGGACCCTATCCAGGTGGACCAGGCGTGGAGGGGGGATGGAG
ACAGTGATGCTGAGAGCATCGACAGTGAACAGGAGGACCCTCTCAAACAT
GCTGGAGTGTACACGGCAGAGGAGGTTGCCCTGATCACAAGGGAGAAGTT
GATCAGGCTGCAGTCCCTGTACATCGACCAGTTCAAGAGGTTGCAGCACC
TTTTGAAGGAAAAGAGACGCAAGTACCTCACCGCCAAGAAAATGGAGCAG
GACATCCTTGGCTCTGTCATTCCTTCTACTGACGAAGACTTGGACAGCTC
TGACAAGGAGAAACTCCGCACCCTCCGCGCTACCAAGCGATATCGTAAAC
GCCACGGAGCCGAGGCGCTTCTCCAGAGCAGGTCCAACGAGAGGAGGATC
GCTGCGTCCGAGAGCCATCTGGTCAGCAAACCCACCCCTCCGCCGCGCTG
TAACATCATTATAGACGGAGAGAGATGCAGCCACAACGTGGTGCCCATGT
CCAGATTCTGTCTCCAGCACGTCCTCCATGACCCACACCAGGTCCTCTTC
CAGCACTGCTCCCACTCGACAGGAGGGATCGAGATCTGTGACAAGCCGGT
TGCCATGGGGATGGACCGAACCACCTGTGTTCTACACTCACCCCTCCCTC
CGCAGAGGTTCAAAATGCCAGAGAAAGAGGAGGAAATGATAGTGGAGGAG
GTGAAGCCAGACGTTATGCAGATCGATGTAGAAGAAGATGACAGCAAGCC
TGTGGTGGTCACTGCTTCAGAGGGCAAGGGTCAAACACGGGACCTAACAG
AAGCTGCCACCATAAGTGGTGCAGAGGGGACCAAGGAAGAATCATTGGGG
AACCAGGAAACAGCAACTGTGGGAGATGAAACACCAGCTACCTCCAACCA
ACCTACCACTCAGGCATCTCAACAAGATTCCATGGATACAAATGGCGAAA
CATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000442-exon-Sc0000000-1564993656:3335844..3335875BlTCONS00000442-exon-Sc0000000-1564993656:3335844..3335875Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3336212..3336326BlTCONS00000442-exon-Sc0000000-1564993656:3336212..3336326Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3336938..3337101BlTCONS00000442-exon-Sc0000000-1564993656:3336938..3337101Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3337569..3337826BlTCONS00000442-exon-Sc0000000-1564993656:3337569..3337826Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3338392..3338570BlTCONS00000442-exon-Sc0000000-1564993656:3338392..3338570Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3339163..3339390BlTCONS00000442-exon-Sc0000000-1564993656:3339163..3339390Branchiostoma lanceolatumexon
BlTCONS00000442-exon-Sc0000000-1564993656:3341369..3341659BlTCONS00000442-exon-Sc0000000-1564993656:3341369..3341659Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000442BlTCONS00000442-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3335844..3341659 +
Properties
Property NameValue
GeneIDBlCUFF000232