BlTCONS00000438 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000438
Unique NameBlTCONS00000438
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3305183..3309451+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000438 ID=BlTCONS00000438|Name=BlTCONS00000438|organism=Branchiostoma lanceolatum|type=mRNA|length=4269bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
TGACCAGTCCTGCTTTGACAGCACTCCCCTATTGTCAGTCTCAATCTGTC
TCTGCGTCCAACATCTTCCCTTAAGGCCCTTAAAACACCGGAAACATGGA
TGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTACGTGC
CGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCATGACT
GAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTTTTTCA
TGAGGTAAGGCCCGTTTTAGGTTTTGCGAAAGTAAGGAGGCGATGCATTT
TACACTAGTCGAATACTACACAGTGATTACTGTAACATGGTGGTTTTTGT
ATGTATGATAATATCTCGGCGCCTTTCTTGCATAAAATCAAAACTAGGTA
GGTCAAGATAAGTCACCTTGTCACATGTACATCTTTTTTCTATCGTATCT
GTTGCCTTGTGCCACCTGCGTGCGATGCATGGCAATTATTGCTGATAATG
GCACCTCGTCCCAAATGTTAGAAGGGAACGCAGGTTTAATCATTTGCGAT
TTGAAGTACATTTGTGTAACGTTTGGGGATTTGGGTCTTGTCACGGTGAT
GGACAGTCAGTTTGGGATTATTGAATCACATTCATAACTTGTGTTCAATA
GTCTTCAGCTATGAATTGATTTTTCTCAAATTATAATGAACGTTTGACAA
TGTTCGTATTGAATCGGAATGGCAAGTTGATTTATGATGCTAGGATTTGA
AGTACTGTGGTCAACCACAGTTGATTTATGATGCTAGGATTTGAAGTATT
GTGGTCAACCACAGTGTTTATTTTACGTAATGTGTATCCAGTTGTGTACA
TAGTCACTAGCGGTTTGGGATCTTTGTACCGTTCTATGGGTCACTTTTGT
ATCGTTCTTCAGATCACTGACCTCATGGCAGAAAACCCAGTAAAACAAAC
TTTACTCTTCTTTAGTGATAAGAATTTGGTCCACTTTTTCCACAGATGAC
CTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCAGTTTCTTCCTTTCA
TGCAGAAATACAAGATTCAGCAGGTAATGTATAAAATAAAACCACTACTA
TCCTAATTATTTACAGAACTGTTGTTGCTTATCCTTACTGTTTGGAATTA
ACAGAGGAAAGATGTTTTGTGTCCTTGTATAACAGTAATGTTCGCACTGT
TTTTTCACGGTATTTTACATTTTTTTAAGCCATGATGGAATCTGTTTAGA
AAGGCATATGATATAAAGTGTACATGAAAGAGTGAGTGAGTGAGAGAGAG
AGAGGGTGGGTGAGAGGAAGAAGAGAGAGAGTGAGAGAAAAAGAGAATGT
GTGTGTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGGGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTNTGTGTGTGT
GTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAAACAGCAT
GAGAGAGGGAGGGAAATAGAGGGGAGAGGAAGAGAAAAGATTACTGAAAA
TGATTTCTTTCCCTCCAGAGCAAGCCTGAGACGTGGGAAGCCCAGCTGCA
GTGCTTCAAGCTGCTGATGTTCAGCCACTTCTTCATCCAGATGCCGCTGA
TGTGTGGAACCTACCACTTCACTCAGTGGTTCAACATCCCCTATGACTAC
GACTCTATCCCACCGTGGTAGGCTTTCTTTTTTTGGTAGTGATTCATTTA
CTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACT
CACTCATCCATTCATTTGTTCATGCACCTGCTTCCATCTATTCTTCTACT
CATCCTCCCATCCTCCCACCCATCCATCCATCCATCCATCCATCCATCCA
TCCATCCATGCATCCATCCATCCATCCATCCATCCATTCATTTTCCATAC
AACAGTTAAGTTTTCACTGAAAAGCAGTGCCATGCATTCCACATTCACAA
TCCGTAATTTGTACATAAAAAATCAAACTTTTTAAGACAAAGAATTGATT
CTTATGTAAACACATTTGTTCTCCCAGGTATGTCCTAGGCCTGCAGATAT
TTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTGCACCGAGTT
CTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCACCACAACTT
CCAGGTATGTACGTTGTACTATTAAAACTGCTGTAAATGATCTATTTTTG
TTGGGACTCCATTTCAGAGTAGAAGGGAAAATCAGGTTTTCACAGTGTTT
TAAGGTAAGCTACTAATAGTTGAAATGATTATGCATGCATTCTCAGGGGA
TGACCATTAGTATTGGCATTACTTGATTTTTAGAATTACACATGGAAATA
TTTCACAATAGTCTTAATTTTCTGTACCTGAATAACCCCATCCTCCTTGG
CAGGACTGTACTGTATGGCGGCATAGACTAATGCCTTGTATCGCAAGGCA
TCAAGTGTATGCCGCCGTACAGCCCTCTATAGGAGGATGGAGTGATGCTG
CCATAAAACAGTTTGTCATCTCTTGCTATCGTATAGGCCCCATTTGGAGC
AGTGGCGGAGTATGCCCACCCAGTGGAGACCCTGGGTGAGTGCTGGAAAT
TATTTTTTCTTCACGATAATTCAATGTTGTAATTCGAGTGGGAAAGAGGC
TTTCACAGCGTTTTAAGTTCGCAGCTGAAACATTTCTGTAGTACAGTAGA
AATACATTGGAAACGCATATTTGCAGTGCCATTAATTTGCAGTGAAGAGG
TCACTGCAAATATCTTGTACCTTTTGACTGTCTTTTGAACATAATATGAT
AACCTTATTACCGGGTTGATGAAGAGACAGAGAATTTGTCTCGAAAGCTC
CCCATAGCAATCTTTTTTATGTTGTGTGTAATGCTTAAATGTTTGTCAAA
AGTATAATATAAGTGAATGCACATTTGGTGTCATAAATGTCACATGAAAT
CTATCGCAATCATAACATGAAGAAAAGAACTTCTTAACTTTTTTTACCCT
TTGTACATTTACCCAGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTT
CTTCTGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGC
TGGAAACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATG
CACCTCCTACCCTGCTATACAGGTAATTATCGTTATAGGAAGGATGTAAT
AAATATGTTTATGACTGTACGTATAATAGAGATATGAATGGATATATGGA
CACCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCGATGCACC
TCCTGCCCTGCTATACAGGTACATGTAATGATTGTTGTAGAAAGGGTGTA
TATATTTACGACTGTAGTCACTGTTCGTACGTATATATGAATGCATGTAT
GGAAGCCATAGACGTGCACAGTGGGTACGACATCCCGTACAACCCAATGC
ACCTACTACCATGCTATACAGGTACATGTAATAATTGTTGCAGAAAGGAT
GTATATACTAAAGACTGTAAGAACCAAGGACATTATATAATGTCCTTGTA
AGAACGTATAATAGAATAGATATATGAATGGATGTATGGAAACCATAGAT
GTGCACAGTGGATGCGACATCCCGTACAACACAATGCACCTCCTACTTTG
CTACACAGGTAATTATCGTTATAGGAGGGATATTTATATCTATGACTGAA
TGTATGTATGTAGAGATAGATAGATATGTGGATGGGTGGATAGAGGAATG
GATGAATAAAGCAATGATTGAATAGATAAATGGATAGATAGATGGATGAG
TTGATATATGGATAAAAGGAAAGGATGGATGGATAATATATGCACATGTA
TGTATAAATGATGCCTTGATTTGACTAGAGTGTTATATGACCCCATATAA
AGGACACACACTAGCAATAACATTATGGTACAGTGCCCTAAACACTATAG
TAAGACCACCTGTTTTATCATGCTATTAAACATGCATGATACGTTTTCCA
CCAGGCGCACGCTTCCACGACTTTCACCACATGAACTTCAATGGAAACTA
CGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGGCACCGACTGGCAGT
ACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACGGACTGAAGAAGGAC
TAAGAAAAACCTAAGGAGTTAGGCAGCAAGCAGGCTGCTAAAGATGGACT
GAATGAATGAGGACTAGGA

Coding sequence (CDS) from alignment at Sc0000000:3305183..3309451+

>BlTCONS00000438 ID=BlTCONS00000438|Name=BlTCONS00000438|organism=Branchiostoma lanceolatum|type=CDS|length=867bp|location=Sequence derived from alignment at Sc0000000:3305183..3309451+ (Branchiostoma lanceolatum)
ATGGATGTCAACGATTCTGTGATCACTACCGTCCGGCTTGTAGCCGACTA
CGTGCCGCAGAATCCGTTAAGCGGGCCGTTCGAGGAGAGCTGGCGGTCCA
TGACTGAGCACTACACCGAGTACCAGATCGCTACCTGGGGGTCCCTGTTT
TTTCATGAGATGACCTACTTTCTGATCTGCCTTCCCGGGTTTCTCTACCA
GTTTCTTCCTTTCATGCAGAAATACAAGATTCAGCAGAGCAAGCCTGAGA
CGTGGGAAGCCCAGCTGCAGTGCTTCAAGCTGCTGATGTTCAGCCACTTC
TTCATCCAGATGCCGCTGATGTGTGGAACCTACCACTTCACTCAGTGGTT
CAACATCCCCTATGACTACGACTCTATCCCACCGTGGTATGTCCTAGGCC
TGCAGATATTTGGGTGTTTTGTAGTTGAAGACGTCTGGCACTACTTCCTG
CACCGAGTTCTGCACCATAAGAACTACTACAAGTATGTGCACAAGGTGCA
CCACAACTTCCAGGCCCCATTTGGAGCAGTGGCGGAGTATGCCCACCCAG
TGGAGACCCTGGTGCTGGGAACCGGATTCTTCCTGGGCATCCTTTTCTTC
TGCAGCCACTTTGTTCAGATGTGGGTCTGGGGGCTGTTCCGTCTGCTGGA
AACCATAGATGTACACAGTGGGTACGACATCCCGTACAACCCAATGCACC
TCCTACCCTGCTATACAGGCGCACGCTTCCACGACTTTCACCACATGAAC
TTCAATGGAAACTACGCCCCGACCTTCAGATGGTGGGACAAACTGTTCGG
CACCGACTGGCAGTACAAGGAGTTCTGCAACAAGCAGGCTACTAAAGACG
GACTGAAGAAGGACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000438-exon-Sc0000000-1564993656:3305183..3305436BlTCONS00000438-exon-Sc0000000-1564993656:3305183..3305436Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3306178..3306255BlTCONS00000438-exon-Sc0000000-1564993656:3306178..3306255Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3306751..3306899BlTCONS00000438-exon-Sc0000000-1564993656:3306751..3306899Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3307260..3307386BlTCONS00000438-exon-Sc0000000-1564993656:3307260..3307386Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3307769..3307817BlTCONS00000438-exon-Sc0000000-1564993656:3307769..3307817Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3308249..3308404BlTCONS00000438-exon-Sc0000000-1564993656:3308249..3308404Branchiostoma lanceolatumexon
BlTCONS00000438-exon-Sc0000000-1564993656:3309237..3309451BlTCONS00000438-exon-Sc0000000-1564993656:3309237..3309451Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000438BlTCONS00000438-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3305183..3309451 +
Properties
Property NameValue
GeneIDBlCUFF000230