|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000000:3299194..3304169+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00000435 ID=BlTCONS00000435|Name=BlTCONS00000435|organism=Branchiostoma lanceolatum|type=mRNA|length=4976bp|location=Sequence derived from alignment at Sc0000000:3299194..3304169+ (Branchiostoma lanceolatum)
TGAGACGCTATACAGTGCAATAATCATGGACAGCAACGATTCTGTGATCA
CCACAGTTCGGCTGATGGCCGACTACATGCCCGATAACCCTCTGAGCGGG
CCGTTCGAGGCGAGTTGGCGGTACATGACGGCCCACTACACCGAGTTCCA
GATCGCAACCTGGGGGTCACTCCTCGTTCATGAGGTAACGTTAGGATAGA
TCTCTCTTGGTAACTTAATACTGATTATAATTAGGAAAAAAAATTAGTGA
AATAGTTAATGCATACGGCTATGAACTATGTTATACAAAAAAGGGGAGCT
TCTATCTAATATGAAATGTAAATCCAATCTGGTAGTATAAACGTAGTGTT
CATCAAAACTTGATTGAAAGATTTGAAAAACTTAAAAAAGCGAGCAAGGA
GACAGACTTCATAGTTCATAGTATTCATAAACACTAAAAGAGTGTGTATT
GAAGAAATTATCAAATGACAGACGCCTTTCATAGGTATAGAATAAAAATG
AAACGGTCGGCATCGATGGGAATTATAAATTTTGAAGTTACAAGATATAA
AACCATAACAGATTGCTGGAATTCAACTTTTTAGTGCGTCATTGGAAATG
GCAATAGACAATCGTAGTATAGCATGAAGTATGTTCAATTTCGGAAGGTC
TTCTATATATATAATAACAACGACCAAACTGAATGAACCGTTGAATATCA
ATGACTAGCCGTGGGGCAATGAAAATGCCAAGAAACTTAATTCCCGTTCT
CTTGACACAAACACCAGAAACGCAATTTGAATCCCGTATACTTTGAAGTG
TACAATGTTGTTGTTATTTTCTCGTAATAGAAAGCAAAAAAGATTTGAAT
ATAGAGTGTGTATGTAATTTTGGCTCTTGCTCATTTCAGGGCGTCTTTGT
GTTTGCGTAATTTTTTACCGGCGGTCTCTTCATGGTGCAGTAGTCTAGAC
ATTGTGTAACGGTTACCTAAAAGACATGATCCAAGAACCCCTCCTATCTG
CTTGGAGATCACAGACGGGCCTCACTACGCCGCCGTCCATTGGGTCATAA
GTATGAGTCGATGTGACGTCATGAGGTAGTCTTGACAGGTTGTATAAAAG
ATAACGAAATGCAAGATGGACGATAGTGATTACAAAAGAAGTTAGAACAC
ATTTGCAATGAGAAAAAAAGACTCTAAAAGATTTGTAAAACTTAACGAGG
AAACACTGCTATTACGCTAATTTTGTAAACTGAAACTGACATCTTTACCG
ACATAAAAAAAGGAGGTAACGTTATAGTTTTTGGCGTGTCTGTCTATGTG
TGTGACTGTGTGTGTGTGTCTGTGTGTGTTTACAGATTTTGTACTCAGCA
TAACTAAAAAAATGTCTTGATGGATTACTGTGATATTTGGTGGGTGGGTA
GGTCTTTGGAGACATGTACAAAGACCAAGGTCGATTTATTTTAGAAAAGC
ACTCTAAGAACGAAACGTATCGTATTTTATCAGCGCTTTATGGTAAACAT
TATCATGATATTTATGGAAAATCCAGACCGTTGAGTTTTACCGACGTAGA
TGTACCAACGCGAAGTTTTCCCGTCTTCTCCCCTCCACAGCTGCTGTACT
TTCTGATCTGTCTACCAGGCTTCATTTTCCAGTTCCTGCCCTTCATGCAG
AAATACAAGATCCAAAACGTAAGTGATAATTTATATAGTCTTTGAGTCAG
TGTACAGGTCGACTAAGCAGGTCTTGCACATTTATTTAGCCCACTCATAA
TGAGGGCCGTTAGACCAAGTTATTTAGACTAACTCAGTTGCAAAGAACAA
AGAGCTTAATCGAGCATTGCTGACGCCTCGTACTTAACTAAACAATATTT
AATCGTAAGTTTCTTCGGATATCATGAAAATGTGATAAAAACTATTTTAA
TGTTACTAGTATCGTGCAATAGTACATATCGTAAATAAACATGATACCAG
CAATGTCCATGTCACGGTTATTTCCTACAGGACAAGCCGGAAACGTGGGC
TGGACAGTTACAGTGTCTGAAAGTCATCATGTTCAACCACTTCTTCATCC
AACTACCGCTGATGTGCGGCACCTACCACTTCACGCAGTGGTTCGGGATT
CCCTACGACTACGACTCCATGCCGCCATGGTAACGTGTTTGTTTGTTTAT
TTCTGTTTACCCTCAGTTTTTACGCTTTAGATGGTGCATTGATTGATGTA
CTTTTAATAGATAGTCTTTTTAAGATAATGACCTGCGACGATATTCAAAA
TACTGTTGTTGTTTTTTTCTGTACTGTAGGGCATTTTGGTATTGACCTTT
AGTGACCTGTAGTACGTTTCAGCATCTGTCCGTTCTTTAGGTCGCTGACC
TACAGGGCGGTCCAATCCTATTCTTCTTCATTATCATCCACAGCGAATAC
CTTCTAAATAAAAAGGGATATAGACATAACAAGCTAATTCTGTTAACATA
ATACATAATAAATAGAAGAAAACCCCGAGCTACTTTGGCCAAAACAGCTT
GATTAAGATACTGCGTTACATGCATGCATGCGCTACAAGGTTTGTGAGTG
AAGTTGCGGCATATTGATAATTTAGTGTGTTGCTCCTGTCTTGCTCAAAA
GTCCTATATTCGCCTCCTTTCGCGACGTTACTGGCGCTATTCCGGACTGT
CGGGGAATCGCTGACAAATGGGCTATATACAGATTCGCGGTTCCACTGTA
TTTTGCCCGAATTTCGATGCCCTGTACAACAGATTCTGCATAGCTGACCG
CCATGTCATCTTGTTTGCAGGTACATGTTGTGCCTGCAGGTGTTCTGCTG
CGCGGTGGTTGAGGACCTGTGGCACTACGTTCTGCACCGCATCATGCATC
ACCGCAGGTACTACAAGTACGTGCACAAGGTGCACCACCACTTCCAGGTC
AGTCTCTCACAACTCTCTAGTCTGTTTTGATTCTTTTATTTGTTTGGTTA
TCGTAGAACGCTCAACTTTAATTTTCTCCGATTCTTTGCCCTTGCTCATG
AAAAGCTTAAACGAAGGCTTTGATTTAACTTGACTTACTCGTAACACGTG
GAATTGCGGACAGTACGAGTGTCTGTCTGTTTGTTTGTTTGTTTTTATTG
CATATATGCCCGGTAAACGTTTCATCTGCAATGGATTTATTCCATTGATT
TCGTTGGAGAGTTGCACTTCAGGCAGGAATTGAAAAAAATGTCATTTTCC
AGGTGCCGTTCGGAGCTACGGCGGAGTACGCCCATCCGGTGGAGACAGTC
GGTAGGTCCTATATTTCTGCCATATTTGGTCAACAGAAAAGTAAACACAA
ATAAAATGAATTCTTCATACTGTGAATCGAGCAATGTTCGCGGCTGTTTT
ATATTCGTGATTTTCATGTGCTCTGCCTTGTATGTATTGCGTTACTATGG
CTATTTCAGCAGCTGATGCCTCCTTTTACTATTACGCGCGCGAATTTAAA
TCAATCTACAGTATTCTTTTATTGTAGTGTGTCTTATAAAGTTATGTTTA
TTTTCTTTGTTTCCCTGTGCAGTTTTAGGGACTGGGTTCTTCCTGGGGAT
CCTGATGTTCTGTACGCACATGGTGCAGATGTGGGCCTGGGTTGCCGTGC
GGCTGATCGAGACCATAGACGTCCACAGCGGGTACGACCTGCCCTTCAAC
CCGCTTCACCTCATCCCCTTCTACGGAGGTCAGTACCAATAAAACTCGCT
GTAAGGGCCCGGTCACATGCGTCTTACGATCGTCGTACCATCGCAAACTG
AGGGCATACCCGGGACAGTTGTGCATGTGTCGATTCAGATGCCTTGTTAC
TGAAATGGCTGTCTTAGATCTAGATCCCTGTCGGCTTTTGGTTCTGTCCC
AGCCTTCTACCGTTTGAATATTCTAAGACATCAAAATCGTACGACGGCCT
ACGACGAATGTGACCTTGCCGTAGCTCTACATGTAACTATTAGAATATCT
TTGTTGGTAGGTAAAACTTCAAAAGTCTTTCTTTTCAGTAGAAAATGAAC
ACCCAAAAGTTTCGCCCAGAAGTCGATATCTTCCACAAACCTTTACTTAA
TCGGGATGGGGGACGATATAGACTTCTGTTGACCTTGCTGACGTCACGTG
TCAGTAGTGGGTACGTCATTCTTCGTGACGAGGGCCGAAATATCAATCAT
AAATTTATTTTGTTGACGTCATTTGGCGTTTAAATGAAAGTTTTGATATC
GTTCATATGATAGCTGATATATGCTGTATTGTTTCCGCCAGGCGCCAAGT
TCCACGACTTCCACCACATGAACTTCACCGGGAACTACTCCTCCACCTTC
ACCTGGTGGGACAAGCTGTTCGGCACCGACCAGCAGTACAAGGACTTCCA
GAAAAAGGTCGCCGCCAGGGAGGGGGCAAAGAAGCAGGAGTAGCCTGTAG
TACCGCAGTATGGCGCCCGGTGGTGTTGTAGAAGTACTTGTAGCCTCTAC
CAGGCTCCAGAGGCGGCCGGAAAGAGTTAGCCTCTACCAGGCTCCACAGG
CGGTGGAAAATATTGTAGAAATTGGCGAAATAGACGGATAACATGCCAGA
GAAGTTAGTCCGCTAAAGGAGTTACAGTTTTGCGACCTGTAACCTTTGGC
GTGTATCCGTCTATCTGGCCAATTTCTACTATTTTCCAACGGCCTGTGGA
GCCTGATAGAGGCTAGAAAAGAGTAGAAATTGACCAAATAAACAGATAAC
ATGCCAGAGGAGTTGGTCCGCTATCGGAGTACAGTTTCAGAGATCGGCAA
ACTGTACTCCTATTATATGTCATGTTCATCCTGTTATCAAATAAATGCGC
AAGTGTACGCACACTGCCGGACATCGATTTAGTGGTCCCTTTCTTCCATC
ACAGCAAGATGTTCGTCATTTGCAAGAAGGGTACCCGTCCAAAAATATAA
TAGTACTAAAATGAATGTGTAAATGTACAAAAACTGACCTAACGTTGGAT
CTGATAGACTCTTTGTGACTTTCCAA Coding sequence (CDS) from alignment at Sc0000000:3299194..3304169+ >BlTCONS00000435 ID=BlTCONS00000435|Name=BlTCONS00000435|organism=Branchiostoma lanceolatum|type=CDS|length=894bp|location=Sequence derived from alignment at Sc0000000:3299194..3304169+ (Branchiostoma lanceolatum)
GAGACGCTATACAGTGCAATAATCATGGACAGCAACGATTCTGTGATCAC
CACAGTTCGGCTGATGGCCGACTACATGCCCGATAACCCTCTGAGCGGGC
CGTTCGAGGCGAGTTGGCGGTACATGACGGCCCACTACACCGAGTTCCAG
ATCGCAACCTGGGGGTCACTCCTCGTTCATGAGCTGCTGTACTTTCTGAT
CTGTCTACCAGGCTTCATTTTCCAGTTCCTGCCCTTCATGCAGAAATACA
AGATCCAAAACGACAAGCCGGAAACGTGGGCTGGACAGTTACAGTGTCTG
AAAGTCATCATGTTCAACCACTTCTTCATCCAACTACCGCTGATGTGCGG
CACCTACCACTTCACGCAGTGGTTCGGGATTCCCTACGACTACGACTCCA
TGCCGCCATGGTACATGTTGTGCCTGCAGGTGTTCTGCTGCGCGGTGGTT
GAGGACCTGTGGCACTACGTTCTGCACCGCATCATGCATCACCGCAGGTA
CTACAAGTACGTGCACAAGGTGCACCACCACTTCCAGGTGCCGTTCGGAG
CTACGGCGGAGTACGCCCATCCGGTGGAGACAGTCGTTTTAGGGACTGGG
TTCTTCCTGGGGATCCTGATGTTCTGTACGCACATGGTGCAGATGTGGGC
CTGGGTTGCCGTGCGGCTGATCGAGACCATAGACGTCCACAGCGGGTACG
ACCTGCCCTTCAACCCGCTTCACCTCATCCCCTTCTACGGAGGCGCCAAG
TTCCACGACTTCCACCACATGAACTTCACCGGGAACTACTCCTCCACCTT
CACCTGGTGGGACAAGCTGTTCGGCACCGACCAGCAGTACAAGGACTTCC
AGAAAAAGGTCGCCGCCAGGGAGGGGGCAAAGAAGCAGGAGTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00000435-exon-Sc0000000-1564993656:3299194..3299377 | BlTCONS00000435-exon-Sc0000000-1564993656:3299194..3299377 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3300784..3300861 | BlTCONS00000435-exon-Sc0000000-1564993656:3300784..3300861 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3301174..3301322 | BlTCONS00000435-exon-Sc0000000-1564993656:3301174..3301322 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3301964..3302090 | BlTCONS00000435-exon-Sc0000000-1564993656:3301964..3302090 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3302396..3302444 | BlTCONS00000435-exon-Sc0000000-1564993656:3302396..3302444 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3302716..3302871 | BlTCONS00000435-exon-Sc0000000-1564993656:3302716..3302871 | Branchiostoma lanceolatum | exon |
| BlTCONS00000435-exon-Sc0000000-1564993656:3303435..3304169 | BlTCONS00000435-exon-Sc0000000-1564993656:3303435..3304169 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:3299194..3304169 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF000228 |
|
