BlTCONS00000423 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000423
Unique NameBlTCONS00000423
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:3237953..3243807+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000423 ID=BlTCONS00000423|Name=BlTCONS00000423|organism=Branchiostoma lanceolatum|type=mRNA|length=5855bp|location=Sequence derived from alignment at Sc0000000:3237953..3243807+ (Branchiostoma lanceolatum)
AGAACACGTGCACACGTGTAAATATGTACGAGTTACCGCCTTAGACCATC CCTACCCTGAAGCTATGTAACCCCTGGATTGCATACCTGAACGTATGTAA AGCCGGGGACGCGTCGGTTTCTGACATTTTCACGTTGGGATCAGTCGACG ATAGACGTACACGGAGTCGGTGCGCTTCGGGGATCCCACCATGAAAGCTC TGGGCCTTCTGATCGTGCTGGCGGGATGTTTCTGCAGCTGTGACGCTCAA TTCCCGCGGGTGTGCACCAGGGATGACTTGCTGGCTAGTAAGGAGTGCTG CCCGATCCCGGATGGTTTCCCCGAGCCGTGTGGCGGACCCGGGCGGGGTC ACTGCGCCGACACTCCCGACCTCAACGTGGAGGACCCCGCCTGGAAGAAC ATTAATGCCTACAAGGTTGACGACAGGCGTCACTGGCCGACAGTGTTCTT CAACAGAACCTGCGAGTGTGAGGGCAACTTCAGCGGGTACGACTGCAGTA AGTGCAAATGGGGATATCGCGGGGAGAACTGCGACACGAAGCAGGAGCCC GCTGAGCGCAAAAACATCAAGGGTCTAGGCCTCAAGAAGATAAAGCAGTT CCGGGACTACTTTGACAAAGCGAAGAACACTAACAGCGACTACGTCTACG CTATGGAGTTCAAAGATAACATCAGGGGAAGCGAAGACTTCGGCAACGTC TCAGTTTACGACCTCTTCGTGGCGACGCATTACTACGCCAGCCGTGCAAC CATGCCGCCCTCCATTACAGGTATGTAACGTTATAATGATTGGTTTGTTT CATTATTTCCACCATACAAACTGGACAGATTCGCACTGCAACTATGGATC AAATTGATCAGGTGCTCAGGTGTCAACATCCTATCAATTATTAAAGATCA TTCACCATATTTTGATAGACGAAAACTCACAATTATTCTACATAAACTAC AAAATAACACCGCTCGTATTTCAACTAAAAGGCCACACCGATTTGATTTT TTGGATGACATCCGCACTCCTACCGATTTCTACCGTTTTTTACAACAAAA AAAAGGAGAGGAAATAGTGCTGTCCTTGGAACTACAGGCAAGGATTTTCT GTAATAACGAGGTTGAATCTAGCCTGGGTCCCAACCTTGTTAGTATATCA GGGCTCCTATACGCCCCTAACCCTCAGGCTAGGTGGAATCATCATCGACT ATGTCACCCATGTTGGGCAGCGCTGGGTTGATTTCAATCAACGGTAGTTG GCGTTTATTCGTTGCGTTTTTCAGTTAGAGTCAAGTGACACCAATCTGGC AAAAGGGTAGACCATAGTTCCTTTCTGTTACATGGCGATACTATAGATTT GCTTGTCATTTGCCACTAGCATATGCTATCAATGCCCCTGTGTATAAAAA CAACGAATATAAGTACACAACGAATAACAGTCAGCTAACGATAAAGCTAA CGATTCTTTGAAATAATTTTTTGCACTCACATCATTGATCATATCAATTT GAGGTGTCCAGAGATTAAGTCAGTGTAGTCTTAGCCTTGTATCCAAACCT ATCATAGCTACGAGAGAGGACAATATAGACTCGGCAGCTGTGATATGTCT GGACACCAGGCTAGCGGGGCCTAACTAAGAACAAATTAACATTACATTTA ACGGGTATGATTTCATTCGTCATTCAAGTACAAATTGAATTTCTCCAACT TTAATATCAAATCCAACAGGCATCTGTGACGATGGGAAGGATTGTTACCT GGACTTCGCGCACGAAGGTGTCAGCTTCCCCACCTGGCACCGTGCGTTCC TTCTGGAGTTTGAGCGGGCTATACAGGAGGCGAACAACGACCCTGACTGG ACCTTACCGTACTGGGACTGGGGCGCGGCGAAGGATAACCAGTGCGACAT CTGCAACAACGAGTACGTCGGGAAGAACGACGAGAACCGCAAACTGGACG AGGACTTTGTCTTCGGGAAATGGAAGATTATCTGTGCTATAGCTACCAAA TTACCGTGGGAAAAAGCCACAGCCAGGAACCACACCAAGCCGTGCAATGT GACCAGACACATGGGAACGTTGAGGAGGAGCCCCGGGACGCAGGACCCGA ACAACCTTGGGGAGTCGATGAGTCACCTGCCCCTGCCGACTGAGGTGGAC TTCGCCCTGCGTTTTTCCGAGTACGACACGCCTCCTTACACCAGGAAATC GAACTGCAGCTTCCGGAACCTACTGGAGGGGTACGCCGACACCGAAACTG GCATGACCCGGGATACCGAGTGAGTAGATTCATTAATACTTTTTGTCAAC CTTAGTTTTGTGCCTCACGTTGTCGCTAAGCCGTAAAAGTGCAGCATGAT GGAGATGATAAGTCAACCATTCAAATGCATGAGGTTTACTTTTTGTCAAT TCAAACTAAGGAGATGAATAAATGTCAATACGGGGCGTCGTAATTCGTGC TTTAAGTAGAACTGGCAACTTGTAGATATGGTAACAGTACGCGCCGTAGC GGCATTTTAACTAAGAAGGACTCGGTGAATGAAATGGTCAGTATGAAATG TCGTTATTTGGGAGTGAAGTAGATCGACGGCCCTAATGGGCGTGTCTGTC TCAAGGCTGCGTCCGGCCCTGCTGTAATTCTTCTCATTTTACTCTTTCTT CGTTTACTTCTTCTTTCACATTAACTAACTACTAATCTTAAAAAGACATG AAGAAGGCAAAAGATTCCTTTTGCTTCCAAATATTATTGGTCATGATTAA GTAGGTTTGTCTCGTCCATGTCTAACTGCCACGTCCTGAGGGCAAATCTA ACTTCGTAGTCTCTGTCGTCGCGTGATCTCAAATGTGCATTTCATTGGAA ATAATAGGCAAAATTAGAGGTCTGCTACCTCATGCATTCGGCAAATGACG TTAATCTTTACAGTTGATGTAGTTCAAAGGTTTCTAATTGGTATTAAAAA CAAACAGGTATTAATTTACAAAGTTATTCAGTTAATTATCTTCTCTACCC AAGTGACACAAGTTCTTGAAGGCGGATGTGGCATTGTTTCTATCACCTGT ACAGCTGACGTCCTGTTTTGCTTGATTTATGGCTAATAATGGCACCTCAG GCTCCTTAACAGGCTCCGTGAGTCGTTTTATGCAAATTAGATCCGGATTT ACTTATAACGTCAATCATCAAATAAAGCTACCCAAATATCACGATGATTC GTCCGTACACTTTCTTGGCTTTTAGATTTTTATAAAAATGACCCTGAAGT TCCAGGTATGACCTTAGAACTTGACCGTACATCTGCAAATGTCCCTGTCT GTCCAGCTATATCATGAATTGTGTGAATATCACTGAACTCTAAATTACCC CTCCATGCTCAGAAAATTCGACAATGGCACAGTAAAGGTCCATGGAGCTC ACACTCTGCACAACCAGGTGCACATTTACATGGACGGCACGATGAGTGAC ACCCCCTTCGCGTCAAACGACCCCATCTTCATGCTGCACCACTGCAACAT CGACCGCTTGTTCGAGTCGTGGATTCGCCTATATGGGTGGGTGTCCTCCA CTTAAGGAGCAACTTTCCATTTCATTGTCGGGCACAGGGGTGAATGTTGT GTCTACTGTTTCTAATGATATTTGTTTGTTATCTTTATTCTCGTCTCAGC CGAAGAAAGTTTGAATTGATCGATTGGTTGATCGATCGATTGATTGATTG GTTGATTGGTTGATTGGTTGATTGGTTGATTGGTTGATTGGTTGATTGGT TGATTGATTGATTGGTTGATTGATTGGTTTATTGGTTGATTGATTGATTG ATGTGTTTATTTGTTGACTGATTGATTGATTGGTTTGTTGGTTTATTGGT TGCTTGATTGATTGATTGATTGATTGATTGATTGATTGTTTCATTATCCA GCACCCCTGCCTCTGCCCTGCCAGTGAAAGGTGCCCCGCCGGGCCACAAC CGCTATGACCACATCGTCCCGTTCTTCCCACCCTACAGCCACGCCAGCAT GTTTAAACTGTCCACGGAGTTTGGCTATGACTACGAGGATCTTATCGGTA CGTTTTGTTTGCTACTGATACAAATTTTGTTCATGCGTCTTTACTTTCAA CCTGACCAAACTATTCAGCTTACAACTGACTTGACGTTAGTGTGACGTAA GCAACAGACAAAGTTGGTTCATGCTAATTATATTCATGTGCATCCCATGT AGAATCGGATGGAGGGAGCGACTTGGGAGAGTGCAGCTCACCAACGCCAG AAGGCGTGTCTCCGGGAGTGATCGGAATGGGAGTTGGCATTGCGCTCGGG CTTCTGGTTGTAGTCACGGTCGTTGCAATTCTGTTGTTTATCAAGTTCGG TCCCAAAAAGCCACAGTATCTCGCCGCCGACACAGGCATGGGGATGTCCG AGCGGACATAAGCAGTGGAATTTTCACCAGGCATTTTTCAGGCCTTAAAA TTCTTCAAGCAGATGTTGGGGTGAAAGATGGCCAAAGATTGTATTGGTTT ATTGGTTTATTGAGAAAATCCATTAGTGATGTGCCCTAAGGCACACCGCT AATCTTCCTGGACTTCTAACATCACAATAAATACATGTATGATTTTCTGA TAGCCGGCCTTTTCTGATTACCATAGAAAGCCATTAGAAAATGCTAAATT CACCCCAACGTCTGCTGGAAGATTTTGTTGAAAAAAAGGCTTTCATAAGA TATCAACGCACAGCCTTAACTTATGTCCGCCCAATTAGATGTCTTTATTC TCAAATTCTTTTCAGAAAATAAATAAAGTGGGTGGGTGGGTGGTTGGATT TTTGAGTGAAACAAAAAAAAGAGTTCTAATACTTGAAATACTTGAAATAT TTTTCTGTAAATTTTCGGACATACGGAGCACCCACAAAGGCAGTTTCATT AAACGAATTGAAATCGTCAGAACCACAATTGCAGTACAGGGTACTACATC AATCTTGTTGACAGATTGTTTACAATATAGCCTGACAGAGCAGACAAAAG TTAAAGAAGAACTTTATTGCATAACAATTTTACACGGTACAATGTGAGGC GACAACTATTAAACCTAGTACAAAATAGAACGAGATGTACCCAAGTTATG TAGATTATGAGTAAAAAACTTAAAGTAGGGATTGCTTTGAGACTCAATCT GGAAATGAATTAATGATAGAATGTACAACGGACAGACCAAGCACAGGGCT TCATAGGTAAATCCACATCATGGTGACTTAAGAATGACAAGTGATAGCTT GATCAAGGGCTTAGCGTGGTAGCATAACACCTAGAGCTACATAAACTACA AAATGTATGTTATAACTGGAGTATCTCGTATCACTACTAGACTAGAGTGC TTAGCGTGGTATTAATGGCTGATAGGGAAGATAAATCGTGGTTATACAAG AATAGAAGTATCTACCACCCATACTTAGCTATGTATCGTCACGAGACTTA TAAGCGTTGTTTTAAGTGTGCTTAGCATGGTAGCATTATGAGACAGGCTA CATAAGAATAAGAATATATACTAGACTATGCATCGTCAGGAGTGTTGTTA AAGGGCCTGTGATAATCTGGGGAGGGGAGGTTAGAACTGAAACTAGAAAT ATTACAGATAGAAGAAGAAGAACTTTATTGCGCGACAATTGTAGCTGGTA CAATGTATGGCAACTTAAGTACATGAGAATTGAGCTATTGCTAATTGTGG ACAGATGTAGAGAATCTAGATAAGAGGGACATTTGCAAGGTACTAAGGAG ACCTGTACATTTATTGTGGGTGGGGTACTTTCAGGGGGATTACAAACACC CCATTCCCCACGATACGTTCCTGGTCCACTCCTGAAAAAAGAATAAACGG TGAAA

Coding sequence (CDS) from alignment at Sc0000000:3237953..3243807+

>BlTCONS00000423 ID=BlTCONS00000423|Name=BlTCONS00000423|organism=Branchiostoma lanceolatum|type=CDS|length=1659bp|location=Sequence derived from alignment at Sc0000000:3237953..3243807+ (Branchiostoma lanceolatum)
ATGAAAGCTCTGGGCCTTCTGATCGTGCTGGCGGGATGTTTCTGCAGCTG
TGACGCTCAATTCCCGCGGGTGTGCACCAGGGATGACTTGCTGGCTAGTA
AGGAGTGCTGCCCGATCCCGGATGGTTTCCCCGAGCCGTGTGGCGGACCC
GGGCGGGGTCACTGCGCCGACACTCCCGACCTCAACGTGGAGGACCCCGC
CTGGAAGAACATTAATGCCTACAAGGTTGACGACAGGCGTCACTGGCCGA
CAGTGTTCTTCAACAGAACCTGCGAGTGTGAGGGCAACTTCAGCGGGTAC
GACTGCAGTAAGTGCAAATGGGGATATCGCGGGGAGAACTGCGACACGAA
GCAGGAGCCCGCTGAGCGCAAAAACATCAAGGGTCTAGGCCTCAAGAAGA
TAAAGCAGTTCCGGGACTACTTTGACAAAGCGAAGAACACTAACAGCGAC
TACGTCTACGCTATGGAGTTCAAAGATAACATCAGGGGAAGCGAAGACTT
CGGCAACGTCTCAGTTTACGACCTCTTCGTGGCGACGCATTACTACGCCA
GCCGTGCAACCATGCCGCCCTCCATTACAGGCATCTGTGACGATGGGAAG
GATTGTTACCTGGACTTCGCGCACGAAGGTGTCAGCTTCCCCACCTGGCA
CCGTGCGTTCCTTCTGGAGTTTGAGCGGGCTATACAGGAGGCGAACAACG
ACCCTGACTGGACCTTACCGTACTGGGACTGGGGCGCGGCGAAGGATAAC
CAGTGCGACATCTGCAACAACGAGTACGTCGGGAAGAACGACGAGAACCG
CAAACTGGACGAGGACTTTGTCTTCGGGAAATGGAAGATTATCTGTGCTA
TAGCTACCAAATTACCGTGGGAAAAAGCCACAGCCAGGAACCACACCAAG
CCGTGCAATGTGACCAGACACATGGGAACGTTGAGGAGGAGCCCCGGGAC
GCAGGACCCGAACAACCTTGGGGAGTCGATGAGTCACCTGCCCCTGCCGA
CTGAGGTGGACTTCGCCCTGCGTTTTTCCGAGTACGACACGCCTCCTTAC
ACCAGGAAATCGAACTGCAGCTTCCGGAACCTACTGGAGGGGTACGCCGA
CACCGAAACTGGCATGACCCGGGATACCGAAAAATTCGACAATGGCACAG
TAAAGGTCCATGGAGCTCACACTCTGCACAACCAGGTGCACATTTACATG
GACGGCACGATGAGTGACACCCCCTTCGCGTCAAACGACCCCATCTTCAT
GCTGCACCACTGCAACATCGACCGCTTGTTCGAGTCGTGGATTCGCCTAT
ATGGCACCCCTGCCTCTGCCCTGCCAGTGAAAGGTGCCCCGCCGGGCCAC
AACCGCTATGACCACATCGTCCCGTTCTTCCCACCCTACAGCCACGCCAG
CATGTTTAAACTGTCCACGGAGTTTGGCTATGACTACGAGGATCTTATCG
AATCGGATGGAGGGAGCGACTTGGGAGAGTGCAGCTCACCAACGCCAGAA
GGCGTGTCTCCGGGAGTGATCGGAATGGGAGTTGGCATTGCGCTCGGGCT
TCTGGTTGTAGTCACGGTCGTTGCAATTCTGTTGTTTATCAAGTTCGGTC
CCAAAAAGCCACAGTATCTCGCCGCCGACACAGGCATGGGGATGTCCGAG
CGGACATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000423BlTCONS00000423-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000423-exon-Sc0000000-1564993656:3237953..3238722BlTCONS00000423-exon-Sc0000000-1564993656:3237953..3238722Branchiostoma lanceolatumexon
BlTCONS00000423-exon-Sc0000000-1564993656:3239672..3240221BlTCONS00000423-exon-Sc0000000-1564993656:3239672..3240221Branchiostoma lanceolatumexon
BlTCONS00000423-exon-Sc0000000-1564993656:3241315..3241488BlTCONS00000423-exon-Sc0000000-1564993656:3241315..3241488Branchiostoma lanceolatumexon
BlTCONS00000423-exon-Sc0000000-1564993656:3241854..3241999BlTCONS00000423-exon-Sc0000000-1564993656:3241854..3241999Branchiostoma lanceolatumexon
BlTCONS00000423-exon-Sc0000000-1564993656:3242155..3243807BlTCONS00000423-exon-Sc0000000-1564993656:3242155..3243807Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:3237953..3243807 +
Properties
Property NameValue
GeneIDBlCUFF000220