BlTCONS00000393 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000393
Unique NameBlTCONS00000393
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:2912551..2917213+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000393 ID=BlTCONS00000393|Name=BlTCONS00000393|organism=Branchiostoma lanceolatum|type=mRNA|length=4663bp|location=Sequence derived from alignment at Sc0000000:2912551..2917213+ (Branchiostoma lanceolatum)
AGCAGTGCAGGTGTGTGCTGTGTGCGCTACTACTACGATGTGCTACTCCG TGGTCGTATGGTAGTAATGCCAAGTGAACATGACAGAAAAAAGAACCAAG TGACATATTCATTGACGTTGAATGAGTACCAGAACTACAAAAAAGAAAAC ATGTTCAATTGTCCAGAGCTCTTTCGAATAAACAGGTGTTTTCAAAAATG ACATGCCATTTACAGCAGACAATATGAAAAGAAAATACAATTTAAAAAAA AAAACCTATCTACGNGGAAGCACCGACAGCTCAGGCCACAGTTGCTGAAG AAAGTCCTGCCCCTGTTGTTGAAGAAGCTGCTGCAGTCACTGACGTTGCA CCGTCGTCTCCAGAAACGGCACTTGAAGCGGTTGAAGCACCGACAGCTCA GGCCACAATTGCTGAAGAACGTCCTGCCCCTGTCGCTGAAGAGGCTGCTG CAACTGCTGAGGTGACACCGTCTACTCAACAAGCTGCGAGTGGAGAAAGT CTAGCCCCAGCCGTTGAAGAAACACCTCCATCGGTACTGGAAGCGCCCAA GGAACCAGCCGAACCTCTTGCAACCGAAGAGAGTTCTGCAAAAATAAAGA TGGAAGTCACGACTAGCGAAGTGGCGCCTGCCGCGCCAGACGTCACCGAG GAAGCAGTAGTACCGGTGGTGTCCTGGAGTGTTGCTGATGCTTACGTGGA TGCATCNTGCTGCAACGCAGCCTTGTGAACACGCGCATGAAGACCAGGCT AACTACTAACGGAGAAAAAATGATGGAGGAAAGTCGACCGAAAATTATTT AACATCCTTTGTCTATCCATCCCTACGTCATGCCCCATACCCTGCTGAAC AATACTTAATTTTTGTGACTCTAGATCTCGAGGACGATCGTCGAGGTCGA AATAGTCTCCAAGACGACGACTCTGTCAATGCCGAAGACGTTTGTAGCCC TGGTGACCTCGCAGACCAAAGATGAGAATGTGATTTGTCCCTTAAAATGA TCCCTTCTTTGCGATCCAAGTAAATCCAATCCACCCTTGACTAATCGTTG TCGTTGACTGAAGATCGGGCTGAACAAATCTCCTAATACCAGCGGCCAGA CCACAATCCTTGCCAAAATCCGTCAGACCACCCCAGACCCTCAGACCAAC CTATTGCCCTCCGGACCAATTTNGAGAAGCCCAAAGCCAAAGTCACACCC CCTCCAACAGAGAAACCCAAAGCCAAGGTCGCACCCCCTCCAGCAACTAT AGAGAAGCCCAAAGCAGCACCCCCTCCTCCAGCAAAGAAGAAGAAGAAAG CCAAAGCTCCTCCGGCGAAACCTGTTCCAGTCGAAGTAAAGGAGGAGACG AAAACAGTGACGTTCGCACCAGGAGAACCCGAGGTCATTTCCGAAANGAT ACTAGTTTGACTTTCTGGTCGTGTTTCTTTACACTTAATCATGTCGTTGC ACTTTTTGTGTGCATGACGCCCCGGGCTCATCCTACCTTAGTATTATCCC TGCATTTGTGATATATTTGTGTATCTTTGATATTTTGATATTCTTATCAG GCTCCGGTCGAAAGCAAAGTCACCGTTATCCGTACGGTGACGCCCTCCGC CCAGCCCGAAGTGATGAGGAAAATCCAGAAACTTCAGGCCAAAGCTCAGC CCCAAACGCCGCCACCGGAAGTGAAGGGCGTCAGAAAGGTGACCAGGATC GTCACAGAAGAAAAGCAGCCAGAAGTCACAGAAGTCCGAAAAGTGACAAA GACGGTGAGCGTGTTGTTTTGGCGTATAGTCTATGATGATTCTTGCTGCT ACTACTACATGAAATACAATCCTTTTCAGCGAACGTTTCCAAATGAAAGT AACAGAGTGAAAGAGAAATATATATTTCATGGAATTATCATAACGTAAAT CATGACTATGATCTAACGTAGACTAGTGGAGAAAAATGATTCATTAATCA GCCTAATTTTTCGGTGGATTTTCACTAGCTTTCCGCCTGAAATGAATATC TATATTGTGACTTGTGTTATTAGAGATATTTTTGTTCTCTTTTTCGCCTA TGCTAGACTGTAGAGCAACCAGAAGTGACTGAGATGCGAAAGGTGACTCG CACCGTCATTGAGCAGCCGCCGGAAGTGACCGAGGTCCGTCGTGTGACCC GTACCGTAACCGAGCAGCCGGAAGTGTCCGAGGTCCGGCGTGTGACCCGT ACCGTGACTTCCCAGCCGGAAGTGTCCGAGGTCCGCCGCGTGACCCGTAC AGTGACCGAGCAACCGGAAGTGTCCGAGGTCCGTCGTGTGACCCGTACCG TGACCTCCCAGCCGGAAGTGTCCGAGGTCCGCACGTTCACTAGGACAGTC TCTGAGCAGCAGCCACAGGTGACCCAGGTTCAGAAGGTCACCCGCACCGT CTCCAGCGACCAGAAACCGGACGTGAAAACCACAACGTTCCGTACCGTCA CCAGCAAGGCAGAGCCTCCAGAGGTTGGTAATAAATCACTTGTCAGTGCC ACATTCAAAGTCTTTTGGTGCTTTAACAATTAGAGAATTACAAGACATTG ATACAATGGTAACGGATCGGAAACGGCAAAAGCACCAAACAATCATCGCA CAATTTGGATGTTGCGCGTTTTGCCATACCGTTGCCCTGTGCCCTGTTCG CAATTCGTCGAAATTTATATTTTTTTGGTGACGCCTAAGGGGCGGAGCTG TTACTTTCTCTACTACAACCCCACCATGTGACGCAATTTATTGTCTTGAT TTCATTTCTGTGTCTGTTTAGCGTATACTATACGTAACACAACAGCTTCG CAGGCATGCAGCGAGGGGGCAGCTGGTTGTGTTACAGAAGGACTTGACGT TATATAGATATTTATCACAACTATATTGAGTTACTGAATTGTGTGTGTTT TTTCGTTCTCCAAGGTACGAAAGACGACCAAAGTTACGACTACCGTGATG AAGGGCGAGCCTGTGACCACAACTCAGACGAAGGTGGAAAAAACGGCTGT CAGGCCTGAGACCAAGGTCCACACTATCACTAAGGTTATTCTGTCTTATC TTTCTTTCTTTCGTTATGATCTTTGTCTTGGCTCAATCTTCTATTCATCC TTTTTTTCTTTCGTTCCTTTTCTCTCTTTCTTCCTATTTTTCTTTTCTTT TTTCTCACATTTTACTTGTGTTTTATCTTGCCTCTTCCTTCTATCTTTCG TATTCCTTGTTCCTTATCTTCCTGTATAATTTCGTGATTACTATTTCTTG TTTTCCTTCCTTCTTCTCTAGTTTCTTCCTGTCTTTGTTTCAGTGTTCCA TCCACGAGAACTAAATGAATTTTAGGTATGTTATCTAATCTAAAAGTAAA TATCATCTTAATCTTGGGGTGATTTTGGTACGAATTCCTTGGTTTGAGTC AGTAACTGCAATTTTGCTTCCTGGCACCGAATGACCACACTTAAGCTCTT AAGTTTCATGAAGATGATTGTGTGCTCAAGAGTTCGAGTTTTACGTTCAA GCCATCCTCAGTCTGCATGACCATGACACCCGTCGCAGTCACGCAGCGGC AACTAGCGGCAGTGGTCATATTGCATTGTACGACGAGTCATACATATCAA TATGTTTATATATAGATATGTTAAGTCCTTTACATCTCACTTCTTGTGTT TAAACAAATATATAAGAAGTATCCAATGTGTATAGTCCTCGTTTGTCAAG AATTGGGTTGGATCTAGGCTATCCAACTAGGTATAGGTAAGGATAAGGTT TTTGATGTCAGCGAACCCCACATCACAATAGTCAAGACCTACATGCATAT GTACATGTAGGAAAGAACGGTACATGTTGCTCTACATCTCCACTAAAAAT GCATATGATGAAACATTGGCCCACCGACTAAAACTGTGAAGCTTCAAGCC TGTAGCAGTGGGGTTGTTTACGCTTTATGGAAACATCCCATGGTAACATG TTCTGGATATCTCTTCAGGTGGAGCCTCCCAAAATTGTTCGCAAAGTGGA AGTGAGAGAAGCGCCCCCTACCGTGACCAAGACAGTGGTGCACAAAGTGG AAACCGCTCCAGAAGTCAAGAAAACGGTCATTGAAGCACCGCCAATGGTA GCTAGTGTTTGTTTGATTGATTGTTTGCTTGTTTGTTCATGTTTATTCAC GTCTAAGTTACACTTAATCTTTGTACTTATCTCGTATGAAGTTACAACTC TGTTTTTCCGTAACATACTATACTAGTACTAGTTATGTTGTGTGGGCTGC TTATTGTTCTTGGGACCAAACAATAAGTTTATTGCAAATTCTTTCTAGGA GGCTAATTGCAAGTAACAGGGAAAACAAGGGCAAGTAATGGAATAGAAAA TGACATGTGACAACTAACAATGAACAGTTGCAATGCGATTTGCTGTGTTA CACTGTCTTGAGTGTGGTGTTAGCTTTCAAACAAAGTGCAATATTTATGT CCTTACAAATGTGTCGCCTTTCTTGTTCGCCATGGCAGAAAGTGTACAAG AAGTTCACCCGGGTGGAGCAGCCGTCTGGCCCGTCCCGAGTGACGGTCCG CCGGACCGAGTTCGAGGCCGGGCCCGGTGACATCGAGACCCGCAAACTGA AACACCGCATCATCACTACCACTACGACAACCACCACTGAAGACGGGGAG ACCACAGAGGATG

Coding sequence (CDS) from alignment at Sc0000000:2912551..2917213+

>BlTCONS00000393 ID=BlTCONS00000393|Name=BlTCONS00000393|organism=Branchiostoma lanceolatum|type=CDS|length=1053bp|location=Sequence derived from alignment at Sc0000000:2912551..2917213+ (Branchiostoma lanceolatum)
GCAGTGCAGGCTCCGGTCGAAAGCAAAGTCACCGTTATCCGTACGGTGAC
GCCCTCCGCCCAGCCCGAAGTGATGAGGAAAATCCAGAAACTTCAGGCCA
AAGCTCAGCCCCAAACGCCGCCACCGGAAGTGAAGGGCGTCAGAAAGGTG
ACCAGGATCGTCACAGAAGAAAAGCAGCCAGAAGTCACAGAAGTCCGAAA
AGTGACAAAGACGACTGTAGAGCAACCAGAAGTGACTGAGATGCGAAAGG
TGACTCGCACCGTCATTGAGCAGCCGCCGGAAGTGACCGAGGTCCGTCGT
GTGACCCGTACCGTAACCGAGCAGCCGGAAGTGTCCGAGGTCCGGCGTGT
GACCCGTACCGTGACTTCCCAGCCGGAAGTGTCCGAGGTCCGCCGCGTGA
CCCGTACAGTGACCGAGCAACCGGAAGTGTCCGAGGTCCGTCGTGTGACC
CGTACCGTGACCTCCCAGCCGGAAGTGTCCGAGGTCCGCACGTTCACTAG
GACAGTCTCTGAGCAGCAGCCACAGGTGACCCAGGTTCAGAAGGTCACCC
GCACCGTCTCCAGCGACCAGAAACCGGACGTGAAAACCACAACGTTCCGT
ACCGTCACCAGCAAGGCAGAGCCTCCAGAGGTACGAAAGACGACCAAAGT
TACGACTACCGTGATGAAGGGCGAGCCTGTGACCACAACTCAGACGAAGG
TGGAAAAAACGGCTGTCAGGCCTGAGACCAAGGTCCACACTATCACTAAG
GTGGAGCCTCCCAAAATTGTTCGCAAAGTGGAAGTGAGAGAAGCGCCCCC
TACCGTGACCAAGACAGTGGTGCACAAAGTGGAAACCGCTCCAGAAGTCA
AGAAAACGGTCATTGAAGCACCGCCAATGAAAGTGTACAAGAAGTTCACC
CGGGTGGAGCAGCCGTCTGGCCCGTCCCGAGTGACGGTCCGCCGGACCGA
GTTCGAGGCCGGGCCCGGTGACATCGAGACCCGCAAACTGAAACACCGCA
TCATCACTACCACTACGACAACCACCACTGAAGACGGGGAGACCACAGAG
GAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000393BlTCONS00000393-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000393-exon-Sc0000000-1564993656:2912551..2912560BlTCONS00000393-exon-Sc0000000-1564993656:2912551..2912560Branchiostoma lanceolatumexon
BlTCONS00000393-exon-Sc0000000-1564993656:2914101..2914304BlTCONS00000393-exon-Sc0000000-1564993656:2914101..2914304Branchiostoma lanceolatumexon
BlTCONS00000393-exon-Sc0000000-1564993656:2914607..2915023BlTCONS00000393-exon-Sc0000000-1564993656:2914607..2915023Branchiostoma lanceolatumexon
BlTCONS00000393-exon-Sc0000000-1564993656:2915465..2915584BlTCONS00000393-exon-Sc0000000-1564993656:2915465..2915584Branchiostoma lanceolatumexon
BlTCONS00000393-exon-Sc0000000-1564993656:2916519..2916647BlTCONS00000393-exon-Sc0000000-1564993656:2916519..2916647Branchiostoma lanceolatumexon
BlTCONS00000393-exon-Sc0000000-1564993656:2917039..2917213BlTCONS00000393-exon-Sc0000000-1564993656:2917039..2917213Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:2912551..2917213 +
Properties
Property NameValue
GeneIDBlCUFF000203