BlTCONS00000348 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000348
Unique NameBlTCONS00000348
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:2599925..2607950+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000348 ID=BlTCONS00000348|Name=BlTCONS00000348|organism=Branchiostoma lanceolatum|type=mRNA|length=8026bp|location=Sequence derived from alignment at Sc0000000:2599925..2607950+ (Branchiostoma lanceolatum)
GAGAAAGAGGAGGAGGCTATAGAAGAAGGGGAGACGGAAAAAGAGGAGGA GACTGCAGAAGAGGTGGAGATGGAGAAAGAGGAGGAGGCTATAGAAGGGG AAATGGAGAAAGTGGAGGAGGCTATAGAAGGGGAAATGGAGAAAGAGGAG GGGACTGCAGAAGAAGTGGAGATGGAGAAAGAGGAGGAATCTATAGAAGA AGGGGAGATGGAGACAGAGGAGGAGACAACAGAAGAAGCGGAGATGGAGA AAGAGGATGCGGAGACGACAGAAGCAGACCCAGAGAAAGAGGAGGGGCAG TCTACAGATATGGTAGACCTTGAGGAAGACACGGTAGAAGTGGCTGATAC GGAGACAGAGGAGACGACAGAGCTTGCTCCTGTTGGTGACGTTGCAGAAG CTGAGGTAACAGAGCAGCCAGAGGCAGAGGGCCTCCCAGAGATCGAAGAG GGCACTGTGCCAGAGCTAGAGGAAGAAGAGACAACAGAAAGCGAGGAGAC GACGACAGTTCCTACTCCTGTTGAGGTCGTTGCAGAAGCTGAAGTAACAG AGCAGCCAGAGACAGAGGGCCTCCCAGAGATAGAAGAGGGCATTGTGCCA GAGGAAGAAGAGACAACAGAAAGCGAGGAGACGACGACAGTTCCTGGTCC TGTTGAGGTCGTTGCAGAAGCCGAAGTAACAGAGCAGCCGGACGCAGAGG GCCTCCCAGAGATCGAAGAGGACATTGTGCCAGAGCAAGAAGAGACAACA GAAAGCGAGGAGACGACGACAGTTCCTGGTCCTGTTGAGGTCATTGCAGA AGCTGAAGTAACAGAGCAGCCGGACGCAGAGGGCCTCCCAGAGATCGAAG AGGACATTGTGCCAGAGGAAGAAGAAGAAGAGACTACAGAAAGCGTGCCA GTAGTCGAGGTTCCGCTGGACGGGACAGAGAGTGAGACAGAGGAAGAGGC AACGGCGCTACCCGACGAACCCGGGGAAACGGCTGCGGAAGTGAAGGTTT GGTTAATGCTTTGGCTCTTTGAAGTTCGGTTGTTCGTTTGATCTGTTTGA GCCTTTGTTTATTCATAAGAATCTAAAATCAGCCTGTATGTCACTTTTCC TTGAGCTCATGAGAAAGGAGGTAAGGATCAGACTAAGTTCTACAATCAGG CTAAGTGATGAATGATGTGGAACAGATTTATGATATGCATATAAAACATC GCTGTAGCTACGGAGCAAAAAACTGAAACCACCGCCCTACAGGTAGAATT ACTACGTCTACATATGCATGCTAGTACAACGACATGGAAGGGTGTACAGG AATATCGTTGCCATGGGCAATGTAGACCCAATACTTTGTTTCTTATAAAA TTTAGTACCTCTAACACAGCTGGAATATAACATTTTTGAACGGATTTGTT GCTGAAGCTTTTTGCAAGATTCGTGAAGACATTTAATCAAACAGTGAACA TACAATTCATGTAACATCTACTACCATAATTCCACATGGGTTTCCGCCAC CCTGAAAAGAGATCTCCATTGAACCCAACATCCCCCAGCACAATGCACTA CTGACAGTACTGTATATCTATACTGGGCACACCTGTAGGGGGGTCATGTG GGGTTTTGCAACACCAGAGATCTATAAAACCCACTGTTTTTCAAAGTGGC GGATTTACGTAACCCGGCGGATTAATGTTAATGGCGGTTATCATGTATGT TTGCAGCCCGAGGAAGCAATGCCAGAGGCTGAAGCTGAGGAGGGCGAGGC TGACGATCGGACCCACCAGGAAGCCAGCGAGGAGGAGACCAACGTGATCG GACTGGCGGAGTTACGTCGACTCGGCTCAGACGCAGATCCCAATGGCGAT ACAGGTCATATATCAGCATATGTTATGCTATTACTTTATTAGTGCTTAGA GGTATTTCTAAAATACGTTAGTAGATTACGAGTCACTGACTCTGTCGTGC TCAACTGGTTTCCCAGTTACATCTAATGTACAAAAATATAGTATTGACTT GTTCTGCCAGGTCATTCTAGTGATGCTGAAGAAGAGTGATGGATGTCACT CGGAACGTCCGGAAGTAAATCTCCGTATCTTATCCGGTTGTAGGAATGTA CATGATAGTAATACATTAAGAATTGTGCTTGTCAACGAGTATATTTTGAA ATGACAATTTTGGGCGAATTTTTTAGGAATTTTTTTGTGAAAAATTCGCC AAAAATCTTCATTTCAAAATATAATCGTTGATACGCATAATTCTTGATGT ATTACTATCGTGTACATTCCTGCAAAGTTATATTAATAAACATCGAAGTA CAAGCCAAGGAGAGCCTTTTTCTAAAAATGGGCGTGGCCTTGTAAATCTT GATGACGTAATCATGACGTCAAACTAATTCACATAAATTATCACCCTGCT ATAAGGTACTACCTGAAAAAAATTAAGGTTGAGGAAGATATATAAAACCT AAGAAGGGTTGTTTTTTTTAATAACATCCCAAAAATCCTCAGCCACCCTT CAATAGTACCTTGAATAAAGTTTCTAGAGAAGTCTTGGCGAATATTTTGT CGTCTGGCTAAGGTTTGTTTGAAGCCTGTCTCAATAAACAATCTCTGTTA CTGCTACTTTTACCAACTTGTAAGATATCTTTTTGGATATGTGATTTTAT TTCTTTCTTTCTCCTGTAGATGTTGAGAAAGGGGAGCCGATTGTTGTGTT TGAGTCGGAGGTGATTCAACCAGCTTCAGTTGAAGAGATAGTGGCGGAGT CAGAGGAATCGGAAGAAGGTAACGTTGTTGATAAAACTGTACATAGATAT GGAAACAGGACTTAAAGCCCTCCATTCTGCCCATGCAATCATCTTGTGGT TTGCAAACCCCTTCTGGATCACAAAAGTGTGGGGTTTGAATCCCAACATT ACACTCGAACCCAGTTCTGAGCGTTCACAATTCTCGAAAACGGAAGTAAT GCGTCCTCATTTGGTAGTTTGAACTTTTTCATAACTGCAGGGTTATATCA TCGATATACCACTGTTTCTAGTAGATTCGTAACATGTATGTATACGAATT AGCCAAGCAGAGGTTGGTGGGGAAGATTGTGACTGGCATAAAGAAAGCGG GACAGATGATAAAAAAAGTGACAATGAATCCCAACAGAGCTCNTGGAAAC AGGACTTAAAGCCCTCCATTCTGCCCATGCAATCATCTTGTGGTTTGCAA ACCCCTTCTGGATCACAAAAGTGTGGGGTTTGAATCCCAACATTACACTC GAACCCAGTTCTGAGCGTTCACAATTCTCGAAAACGGAAGTAATGCGTCC TCATTTGGTAGTTTGAACTTTTTCATAACTGCAGGGTTATATCATCGATA TACCACTGTTTCTAGTAGATTCGTAACATGTATGTATACGAATTAGCCAA GCAGAGGTTGGTGGGGAAGATTGTGACTGGCATAAAGAAAGCGGGACAGA TGATAAAAAAAGTGACAATGAATCCCAACCGAGCTTTGCTTGGAGAGTAA CGCTAACGTTATATACAAATATCACACCGTCCACTGTTTTCCTAATAGAC CTGGGATATAAGAATCTCAGATATAGGGATCTAGGATATAAAAATCTCAG TTATAAGAATCTAGGATATAAGAATCTCAGATATAAGAATCTAGCATATA AGAATCTCAGATACAAGAATCGCAGATAATTACGAGAATCTCAGATATAA GAATCTAGGATAAAAGAATCGCAGATATAAGAATCTCAGATATAAGAATC TAGGATAAAAGAATCGCAGATATAAGAATCTAGCATATAAGAATCTCAGA TACAAGAATCGCAGATAATTATGAGAATCTCAGATATAAGAATGCAGGAT ACAAAAATCTTAGATCCTCCACTGTTTTCCTAACAGACCTGTGATATAAA AATCTCAGATGTAAGAATCTAGGATATAAGAATCTCAGATCCTACACTGC TTTCCTGACAGACGTGGGCTGTGCGTCGTTCGTCGCTGTCGAGTTCAGCA CCTGTTACGCACGGTACCAGCACCGGGCATACAAGATCAGGAGAAGTGGA AGGTTATCGCACAGAGCTTTCTGTCTGTGAGTATGGAGTTCATTTCCTTG TTTATAGTAACACAATAGAAACAAACACATAAAGGATGCACAGATGAAAA GTAACAGCCAGCCAAAAGGCTTTTTTGTCTCTTCCAACTTACTAAAGCCA AAGATAACTAAGACATGCCTGTATGTTTTACGATAGTAGAGAGGCATTGC ATCACATCAGTATCCGTATTACGATATTTTTTGTTGCAATTGAATTTATG TCAGGAGGGAAATATCCTGACTTTTCTTGAAAATACAGCCTGTCTAGTTT TATATCGCTTTCATATTCTTTACATCTTGTTTTATATCTCCAGGGCCCAC TACGACTTGTACTCGTGCTACACCACTGCCTTACAGGAGTGCATCGAGAC CGGGTTCACCAGATTCAGAAATGTCCTGGAGGCAGAGGCTAAGCTTATTC TCCACAGGTGTCCACCTGCAGGTGTCTTACCCTGAGGAGCATCCACAGGC TCTGTTCACACTACAGGGCTCGAAATTCGTTTTTGGAAAAAGGTACACTG GTGCACCCAACCCAAACAATTAGGTGCACAGAAAGAATTTTCGGTGCACC ACATAAGATAAACTTTATTAAGTTGAATGTCAGCAAAACATAAGTTTAAC GCTACTGCCTCTCTTAAGAAATTTCAACCAAGCACTACATCAAATAAAGG TTATTTTGCTTTTTCTGATACTTACATTTCAAGAATATTCTGCATTACTA GTGTACAAGATCAAACCTTTACCCAAAAGAGTACAAAAATATCCAGGTGC ACCAGTGCACCCACAGTCAAAAATTAGGTGCAGAGCCCCAATTTTGGGTG CTCACAGGTGCACATGCACCCACTATTTCGAGCCCTGCACTAGCATGTCA TGCTTTTATTGCCTGTTAACTACTGACTTTCAAATGAATGTTGCTTGCAA ACATTATAACCAGAATGATTTGAATTACGGCATATATAAGGCTTCATACT TTACCTTCATCCGCCAAAATTTGAGTTGGTTTCTAGGAGAGGCTGAAAAT TATTGAATGCCCCTCGTATAGCTGGCGAATTGCTCTAGAAAATCATTCTC TACTTGACCAATGTTTACTATCTTTTAGCAATCCAATAAGAGTCTGGTAG GGTGTCTAGTGGTACCTATAGAAACCATTAGTTAGCAAGTTATGGCATCT GTACCAGGCAGAGCTGGAAACTTGATATGAAGGCTATGTACGGATGATGT TAGTAGCTATGCGAATTAATGTAAAACTTAAAATGTCTAAGTACAGTGTA TATGCCGTTATGTGTGTAAGGAAAGATTGCATACGGCTCTTTAGTAGAAG TGTTTGGTCATGATTATGCATTATGATGTATCTATATTGCGATTAAGTCG GCCATCGGCAACATTCTCAATGCGTTGACCTACTAGTCTTAAATCATAGC TATTAAGGTACTAATACTCATAACAGATTGTAGTACAGATACAATCTATG TTAATAGATAAGTAACAATTTCAACATTACTGATAAGTTAGTGCTTAAGA AAGTATGTTTGTTTAAGTGATGAGAATGATAGGTATGACTGTTTTGTGAA TCCAGTGTAGACTGAGAATGTTAGACTGAATAAGCAAATAATTCAGATCT TAATTACTTGTAAAGAAATATACAAGACGACAATATTGATGACAACAAGG CAGTTTTTTTCTTTCATCATTCCAGTACATTTTTAAGTTGAACCAAAGCT CATTACATTACAAACATTATTATAAAATCACCAAGACCAAAGCTGCTCAT TTACAAAGCTTTCAATATTATCACGTACAGAAATAGCAATGATCAGTACT TGTACGTTAAACAGAAATGCTCATTAATACCTTATTTACACTTATAAGCC ATCAATACATAAAAACAAATTTATCAATGATCTAACAACAAACTTTGGAA CGGACCAAAAAGGATAAATAATGGGGTTGAAATGACACTTGATGATCAAG ACTAAAGACTGCAAATAATCATCCCCAAAAGTCAGTTAGATGTATATCTT TTTAATGAGATCCTTGTAAAATTTTCCCCTGAAACTTTCATAATCGGATA TTTAAATTCCTGTTTCCATACAATTTCTCTTGACCTTATACAAGAATTTT TTTGCTGTTAGACAAAGTACTAACCTTAAGCTACCTGCGTTCTTTTTTAT AAATAAGGACAAGCATTTGTTGTCAGTCAGCCAAAAATATACATAGTTCA CAAACGGAAAGTTTCTAGGCTTTTACAACTATACGGGCAAGCAAGCTCAT ATTACTTGGCATAGACAACATAATAACATTCATATTTTGTGATTTCCATT TCCTCTTGGACAATAGAATCTGTCACAATAAAAACTAACTTTCTCTATTT TTTTCCTTTGTCTTTATTTGTGTAAAACAAAGTTATCTCTTTTGAAACTT CTTTTCAAAGCTATGTTTTGGTCTATATCCTACTGACATAATCAGTTTTT TTATTGAATTTCCTTCATTTCACTGCAATTGAACCATATTAAATAGTTAG TCCAGACATAGAAATACTGGCCATCATGGGGCAATTGTCGGATTACATGT AGAGCTTCTTTCTTTTCAAGCAGCTACCCATTTTGGTATGTCTTCTTATA AAAAGCACCAAAGAAATGAAATTAAGGTGGGGTACAGGCATGTGGCAGCA CATTTTCAACAAAAATATTTTGACAAAATAACCATCTGATTTGTTAGATG TATAGGTCTATTTTCATTATCTAGCATCATTTTCCTACAAAGGTTATCAG TTTACCGCAAACTTCAAGGGCAAAGTTGCAGTTTCCAACGTCCTGGCTGG GTGCCGATACCTTTTGGAACAGCCTGACCAATCAGGGGCCTCCATTTTGG CTATTCCCTCCCTCCCTCTGGAAAGCTGGATTCTCTGGCCTGGCTGTAAA CACTGCTCTGACTGTCAGATAGTGTGTTTGCAGAGGTTATTGACCCGTAT GTCACTGTTAGTGCTTGCGTGATTGGGAAAAAAGCAAATAATGGCGATTT GGGGTCATTTTACGATTACTAAATGCCAATTTTATTAATACTACCTCTAC AGCATGATTTTAAAAGCAAAAGTTTGACAAAACTGTATATGATAGGGCAG AAAAAGAAATGCTGTTCTGAGGTTTACCACCTGATCTTGCCTCTCACGGG TGGCATAAGCATTTTGATACTTTGATAATGTGTGAGGGCCCACAGAAGGA GGTTCTCATTAAATTATTGAAAAAAATTCATCAAAATTAATTCAAAAAGA TATCAAAAAAGGAGCCCGTGTATTGACCAATGGCATTATTATGCATCTGT CCCTAAAATATTAGCTTTGTACATTGGATCGTTAGCGAGGAAAAACCACT TTTGTAAAAAGGGGCGTGGCCCTGTAATTGTTGATGACGTCATCATGACG TCATAAAAATTTGCATAAATTATTGTCTTGCACAGAGGTACTTGGAGAAA AAAAATCAAGAGCCACAAGTAACACTATATAGTATTTTCAAGACACCCCA GAAGTGCTGCCGCATGCCTGCACCCCACCACTGACATTCAAACAAGCTAC TTTTCATAGATTTAATCTTTACAATTTCTTGTATCATGAAATTTTTCCCT GCTAATGGTTTAGTCTGTCTGTATCTGTATAGCCGCCCTTAGGCACAACA TACGGAGTAATTATTGATATGTTTTGTAAGAACCGTTAGTGTCTACAGTT AAGTCAGTTGAACTGGAATATACCATCTCTGGAAATGTATGAGGATTGTT GTACAAAGTGGCAATACAATGTTCAGCAAAGGCAGTGTTAATGTCTAATG TTGAGCCATCCCTGAGAAAAACACAATGAAGCACTTTTTTCCTGACTGTA TGCTCTTTGTTTCTTTGATAGACGTGGTGTTTTCTGTTTCAGAAGAATAG CGCTCTCTTATCTAAATACAATCAAG

Coding sequence (CDS) from alignment at Sc0000000:2599925..2607950+

>BlTCONS00000348 ID=BlTCONS00000348|Name=BlTCONS00000348|organism=Branchiostoma lanceolatum|type=CDS|length=1026bp|location=Sequence derived from alignment at Sc0000000:2599925..2607950+ (Branchiostoma lanceolatum)
GAGAAAGAGGAGGAGACAACAGAAGAAGCGGAGATGGAGAAAGAGGATGC
GGAGACGACAGAAGCAGACCCAGAGAAAGAGGAGGGGCAGTCTACAGATA
TGGTAGACCTTGAGGAAGACACGGTAGAAGTGGCTGATACGGAGACAGAG
GAGACGACAGAGCTTGCTCCTGTTGGTGACGTTGCAGAAGCTGAGGTAAC
AGAGCAGCCAGAGGCAGAGGGCCTCCCAGAGATCGAAGAGGGCACTGTGC
CAGAGCTAGAGGAAGAAGAGACAACAGAAAGCGAGGAGACGACGACAGTT
CCTACTCCTGTTGAGGTCGTTGCAGAAGCTGAAGTAACAGAGCAGCCAGA
GACAGAGGGCCTCCCAGAGATAGAAGAGGGCATTGTGCCAGAGGAAGAAG
AAGAAGAGACTACAGAAAGCGTGCCAGTAGTCGAGGTTCCGCTGGACGGG
ACAGAGAGTGAGACAGAGGAAGAGGCAACGGCGCTACCCGACGAACCCGG
GGAAACGGCTGCGGAAGTGAAGCCCGAGGAAGCAATGCCAGAGGCTGAAG
CTGAGGAGGGCGAGGCTGACGATCGGACCCACCAGGAAGCCAGCGAGGAG
GAGACCAACGTGATCGGACTGGCGGAGTTACGTCGACTCGGCTCAGACGC
AGATCCCAATGGCGATACAGATGTTGAGAAAGGGGAGCCGATTGTTGTGT
TTGAGTCGGAGGTGATTCAACCAGCTTCAGTTGAAGAGATAGTGGCGGAG
TCAGAGGAATCGGAAGAAGACGTGGGCTGTGCGTCGTTCGTCGCTGTCGA
GTTCAGCACCTGTTACGCACGGTACCAGCACCGGGCATACAAGATCAGGA
GAAGTGGAAGGTTATCGCACAGAGCTTTCTGTCTGGCCCACTACGACTTG
TACTCGTGCTACACCACTGCCTTACAGGAGTGCATCGAGACCGGGTTCAC
CAGATTCAGAAATGTCCTGGAGGCAGAGGCTAAGCTTATTCTCCACAGGT
GTCCACCTGCAGGTGTCTTACCCTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000348-exon-Sc0000000-1564993656:2599925..2599939BlTCONS00000348-exon-Sc0000000-1564993656:2599925..2599939Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2600150..2600515BlTCONS00000348-exon-Sc0000000-1564993656:2600150..2600515Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2600780..2600920BlTCONS00000348-exon-Sc0000000-1564993656:2600780..2600920Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2601631..2601778BlTCONS00000348-exon-Sc0000000-1564993656:2601631..2601778Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2602594..2602692BlTCONS00000348-exon-Sc0000000-1564993656:2602594..2602692Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2603886..2604000BlTCONS00000348-exon-Sc0000000-1564993656:2603886..2604000Branchiostoma lanceolatumexon
BlTCONS00000348-exon-Sc0000000-1564993656:2604318..2607950BlTCONS00000348-exon-Sc0000000-1564993656:2604318..2607950Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000348BlTCONS00000348-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:2599925..2607950 +
Properties
Property NameValue
GeneIDBlCUFF000196