BlTCONS00000253 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000253
Unique NameBlTCONS00000253
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:1623442..1632514+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000253 ID=BlTCONS00000253|Name=BlTCONS00000253|organism=Branchiostoma lanceolatum|type=mRNA|length=9073bp|location=Sequence derived from alignment at Sc0000000:1623442..1632514+ (Branchiostoma lanceolatum)
CGAAGATCTCAGTTCATTTTATCTATTCCATATTTTTAAAGATTCTATGC GTAAATGTGAATATTATCCAAACAGCTAGAAATCTATCTGCAAAAAATGT ACATTGCTGACTTATTTAGCACTTTTGTGGGAGAAAATGTGATTTTAGAA TAAAAATTTTATGTTCGGAAAGTTTCCGAAGATTTCCGGTGATAGCCGAA GTTGAAGGTGCGCATGCGGGGTAGACTTGATTTTTTTGGCGGGCAACCAG AGGGGGATCATTGCTACACACTGAAAGGTAAGCACGATGTCACCGCTTGT TTTGAACAACTTTTCTCGCCAATTTAACTCTTATCAGCCCGTTTCCTTGT CAGACTAGTTCGCGTAGACCTCTCCGAATCTCCCGGTCATTGATTTATGG AAAGTTTTGGTCAGATAGTTGCCTTCTAAGGTGGTGTCGGAGAGAAAAAG ATCTTCGAAAATTTCCATTTTCTTTTTTCAACATGGCCGCCTTGCGGTCA CGATGAAGACTCCGCACAAAGTAGCTCCTTCAGTACCTAACTCCGTGCCG TAGTTTGGGGGTGCTATGGAGTGTTAAGACGACTGTGATGCCCTGTTAAT AGTTTTGGTGTGAGAATTGTGTAGATTTTCCCTCAGGTTAGCTCGTGGTG TTTGTAGTTATGTATCGGAGCGCGAGCAAGTTTTCCCCTCAAAAGGCCCC ACGCCGTCAAACTATGCGGCTCTCACCTGGCCTGTGTCTCATCTAGGGCG ACGAACGGCATATTTTTACTAAACACGTCACATTTCTAACGCCAAACAGA GACATTTCGAGGTACCAAATTAAGGACGACTTTATTTAAAGCTGGATAGA TGCAGGCACGATTTGGGAAGTTCTTTGTTACTTCTTTTCAGGACAGAAGT CATGTGCAGATGCATACCTGTTGTAAACAATGTGGCATTGAATGTGGAAT AGCAGAAAGACAAAGGGTTCTTTTGTCTTTGGAAATCTACATCTCTTTAT TACAGGACATCTCTCCAGAAATCACACCTTAGCAACTATTTTTTTTCCCT TGACTCTGGGTGTAATGACTAGTTTGAGGAAAGTTGTATGTTCATAAGAT TAGCATACAATATTAGGAATGGTTTTATTGTGAAATAATGGAATGGGGTC AACACAACCCAAATTCACAAGGATAATTTGGGAGGGGGGGCGCAAATTCC TATCATACAGGTACAGTATATTCATAAGTGCCCTTGACTCTTGGTATAAT GACTGGTTTGAGGAAAGTTGTATGTTCATAAGATTAGCATACGATTAGGA ATGGTTTTATTGTGAATTAATGGGATGGGGGTCAAAACAACACAAATTCA CAAGGATAATTTGGGAGGGGGCGCAAATTCCTATGATACAGGTACAGTAT GTACATAAGTGCCCTTGACTCTAGGTGTAATGGATGGTTTGAGGAAAGTT GTATGTTCATAAGATTAGCATACAATATTAGGAATGGTTTTATTGGAAAA TAATGGAATGGGGGTCAAAACAACACAAATTCACAAGGAAAATTTGGGAG GGGGGTGAATTCCTATGATACAGGTACAGTATATACAAAAGTGCCCTTGA CTCTTGGTATAATGACTGGTTTGAGGAAAGTTCATAAGATAAGCATAGGA TTAGGAATGGTTTTATTGTAAAATAATGGGATGGGCTCAATAGATCACAA ATTCAGAAGGATAATTTTGGAGGGGGTGCGAATTCCTATGATACAGGTAC AGTATGTACATAAGTGCCCTTGAGTCTGGGTGTAATGACTGGTTTGAGGA AAGTTGTATGTTCATAAGATTAGCATACAATTAGGAATGGTTTTATTGTG AAATGATGGGATGGGGGTCAAAACAACACAAATTCACAAGGATAATTTTG GAGGGGGTGCGAATTCCTATGATACAGGTATAGTATGTACACAAGTGCCC TTGACTCTGGGTGTAATGACTGGTTTGAGGAAAGTTAATGTTCATAAGAT TAGCACATGATTAGGAATGGTTTAATTGTAAAATAATGGGATGGGGGTCA AAACAACACAAATTCACAAGGATAATCTTGGAGGGGTGTGTGAATTCCTA TGATACAGGTACAGTAGGTACATAAGCGCCTTTAACAACCTCAACATTAC TATTGAATTTTGACTTATTTATGATTGTGCTGATATAATTTATGTAAATT TTATTTTGTACTCTTAATACGTGACTCCNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTTTTTTTGTACTCTTAA TCCGTGACCCCCCCCCCCCCCCCACCCCCCCTCCACTTCGACCTTGTTGA AATGTGGCCTTTGTGGCCGAACAAGCTATCAAAAGGAAATAAAGGCTTTG TTTGATTGAATAGAGGGGTAACCTAAATTTACATTTCAGCACAATGTCAA AAAGAAATTTCACTTTCTCTACAAAGACCATCTGATCACAAATGTAACAA AGAGTGCTACCTCAGCAGAAAACTTGGAAAGCCACCCCACCATAATGTAA TTCAATCCCTCCTATTGAAATATATACTTCTACAAAGTTCTATGAAGGTC ACTCTTCACAAATTGCTGACAGCCCTTTGTGACATAGGCTTACCTGTCCT TGACGTTTGTCACCTGTGTTTTCTGCCCTCGGGCTTCGCATTCTCTCAGA CACAGACAGCTGCTAGTTTAACAACTGAAATTTTACACTAGATATTTGAA ACTATCCACTAGAAATGCTCCTCCCATATTTTATATATGATGATTTCCAC ACTACAATGTCCTATAGATTCTGGCGAATTTTGCCCCTAAAGAGATCTGC TTGTCTGTCTGTCCTTTTCATGTTACTTGCAATTAGCCTCCGGACAAGAA TTTGCAAAAAAAATAAAAATATCCGTCTTTTTTTCAGCGGTGCTGTTGGA TTCTACTTCTGATCGTCCTACAAAGGATGGGAAAGAAGAAGATGAAGAAA TCCGGAGCTGAGATGGAGGAAGAAGAAGAGCCTGAAGAGTATGTTGTGGA GGAGGTGCGGGACCGACGTGTGCGCGGCGGCAAGGTGGAGTTCCTTCTGA AGTGGAAGGGATACTCCGAGTAAGTTCTGCAAATATTTTATTCTGACTGT AGTGTTGCATGGCTGTCTTCAGGAACTGTCCCGTCATCCCAGGACGAAAA TTCCCTTGTCGAATTCACCCCATAACATTCGTACCAAAGATACTTCATGA CATGACATTGATAAAAACGTTTTTTCGTAAGCTGAGAGTCACAGATTTAT CAACAAATAAAAACAACACTGGCTCCCAGACAATGAATGGGATGGAATAA ATTGAAAGCAGGAGACAGCCCTGGACTTTTTTCTGCCAACACGTATAGTG CCATAGCATAGCATTTATCATTACAGATTCTGCAACATATTATAACTATG ATTAGGGTTTTTTCTAGAAAAATTAAACAAGAGGGAGCACACACAGGCGA GGTAGCGAATTCTATGTATTTATGGAAGAAATATATCGCTGAGGGAAGTC TGTATGATGGGGATTATGCTAAAATCTGAATTCGACAAGAAGGGGGCTGG GCTGAAACAAGAGGGCGCAGCGCCCCTCTTTCCCAATGTGAATGAATCCC TGATGATATTTCTTGCTCGTGTATCTTGGCAAGTTTTTCTTGTTGCCTTT ATACTGAAATTAACTGGGTTACTTCGTACTTCAGTGCCCAAAATTTGCTT TCTGCATTATTCGATCCATGATACAAAGTCTCTTAGCATGTAAAGTGTAT TTGTTAAGCTGTTGACATATTTCTGAAGATTTCCGGAGAGTATTTCAAGC CCCTTTTTGCCAATGTGTTTTCCATGCCCTTGGATTTAGTATTTGTTAAA AGCACTCCAAGTACAAATAGTTGCATAAAAGCCTGAAAGGGGGTCTTCTT ACAGGTTTATATATATATGGCCTCTGTCGGTCTGTATTTGCCATGGTAAA ATCCTAATTCACAACAGCCCTACAGCATCGACTGGCTAAACAGCCCTTTA TGAGAATGGCAGTCTCTGCCACAAAAATTACATCTGTGAGCTGACTCAGT TCTGTTACAAAGCTCTTTTCTGCGGATCTGCTTTTCTTCTGCGCTGTGCA TCAGTCTGGCTTCTCCTGATTTGAGCTTACAGGTGGTGCTTCACTAACAG TAACAACTGGGTAATTAATTTGCTTGCAGGATCGAAAATACTTGGGAGCC AGAGGAAAACCTGGACTGCCCCGATCTGATTGCGGAGTTCATGAGGAAGT GGAACCAGAACAAAGCAGCCAAAACAGACGAAAAGAAGAGAAAATCCACA TCCACCGTGAACGGCACAGAAGAGTCCAAAAGGAAACGGAAGGCAGAAGA GGTGGGTACGGTTTGTGCGACAGGCAGACATTTTAATGGAGTGGCATCAT GAATAAATTATAGGGGCATGTTTTTATTAGTCTTCGTGATGAATTTTTCA GATGAAGAGTGAATGTTTGACGAAAAGTGTTGCCCTTGGCTGGCCGTGTT GGTTTCCACGGATCTTTCTTAAACCTCCCGTGCCAGTTTGTATTTTTTTA GTTTTTTTTCTGCAGAACTCATATTGTGATTTTGCACTGGTGTGAAGAAC TGTTAGTGAGTTCTGAAATTTCTTGTGGAAAATCATCTCTGAAATCTACA TGTCTCAGGTGGAAACATCTTTGACATAGTCTTAGTATTGCATGTAAACC CCAAATGTTGTGACTCTAGAAACGTAGCAGCCCCAGGAAGGCCGGGACAC ACATGGTGATGTACGAGGTTGGTGATTGGGTGCAATGGAATCTCTCCTCT TCGATTCAAACCAAACCTTCCTCTGGATTGAGCCTTTTGCTATTTGTTTG TTTCTTTACAACTGTGTGGACTGAAATGTGGAAACATTCTTCATAACATA CTTTTTTTCAGCTTTGTCTTTGAAACTGACTTTCATTGATTTGCATACAC CGCCTTTGACTTGCTTTAGGTAAAGAATTTAGATAAAAAATGGATGCAAT GGAAAGAAGCAGTCATGAGTTCAAAAGTAAGCTGTAAATTAGATAAAGGT ACAGTTTTCTTTTTAAAATACTGGCACCGCAAACATTTCTGCTTTTACAG TACTTGAAATTGACCTTTTTTGTGCCCAACTTAGGATGATGAGGACAAAC CCCGCGGCTTCGACAGAGGTCTTGAGCCGGAGAGAATTATCGGAGCTACA GATTCCAGTGGAGAGCTCATGTTCCTTATGAAGTGGTGAGTGAATTATCA TCTATCACTAAGGCCACACCAATTTACTTTCTTGGTTAATGGAATTTGAA AAGAATGCTACATTGGAAAATCAACATGAAAACAGAATCTCAGAGGAAAG TCTGTACTTTGGTGCACACAGTTTCATGGAGTGAACAGGGTCGGGTGCAA GTTTTCACCCCAGCCTTCTATTTTAATGATGTCCTCATGCTAAAATTAAA AAAAGAAATCTGTTAACCAAGAAATTAAATTGGTGTGGCCTAAGTATCAG GCTTTACTTTTTGGTTAAATAAGGCCATGATGATTCAATTGTATGGATGA CATCCATGCAGGCATCAATTTTTCCCCAAGAAAAAAGCTGTCAATCATAG CACAAAGCAGCTTCAAGATATGGCCAAAAAATATTTTGGAGAACAATACT AATGTCGTAGAATGCCAAAGAAGAAGATGTGAAACTGAAAGAACAAAAAC CTATTATTCGGTATACCATTCTTTGTTTGCTTGAGCATTTGTTCATCCTT CCTGGCCCATGTAGATTTCATAATAAAGGAAAGTTTTTTTTGCCGAGCTT TTTTTATTTGCACGCTTGCATTAATTTCGGGGTTCCCAGAGGATGTCATC CGTACAATATCTCACACGTGCAGTAGAGCATAATGTTGGTAGAATATCTC GCCATGACTCACGAATGATTGTGTTGTATCTAAAGTCATGCAAGAATTGA ATTTTTTCATGTTGAGTTAACGTATTGTAACGTTCGCCCTCTTAGATGCT ACTATCTCACATGACAGTTGAGCATGATTTCGGTAGAATGTCTCCAAAAT GACCAAAACGAAAGAACACGAACCATGTGCCAGCTCTCAGTCTTATGTAT GTTGTACCATGTATGTGGAATAACATGTGTATAGATTTATGAGGACATTA AATGATGTAAACTGTACTTTTGTTATAACTTTTGCTTGACCCTTACCTCA TGGCATCAATGAAAAGCAGCCTGATTTGAGCTTCTCATGAATAAACAAAG GTTCAAACAAAAATGTCTGTGTACGCCAAAAATAGTTACTCAAGCAACTG GATAAAATTTTGAAACAGTCAGATGTTTCAGACAGCATCCGCTATCTTTC GTCAGTGACTTTTTATCCAGTTTCTTGAGTAACTATTTGGGGCGTATCTA ATTTCCTGGATGTCTAATCTTCATCAACGTAAAATGTCTGTGTGTCTGCA GGAAGGGGAGCGAGGAGGCTGACCTGGTTCCCGCGCGGATAGCCAACGTA AAATGCCCACAGATCGTCATCCAGTTCTATGAGGAGAGGCTAACCTGGCA TTCGTACCCCAGCGAAGAGAACCAGAACGACTCTGGCAGCACTTCAGAAA CCGTGAACGAAGTCTGATGACTGCCCATTTTCCAGAGTTATTTTTTTTTC TTTCATATCAAAAGTACTTTCCTGATGAGCTAGGAAAAGGGAGCAACCAT ATTCTCCTGTAGTGACACTCTTAAAAAGGTTGATCACTGAAACTTTCACC GATATGTGTACGGGGGTCTTTTCCAAAGCACACTTGTTATCAGTCAAACT TCTTAACTATGTATGTCTCTAATAGTTAGGTCTATTCAGCAAAAGGATCG TATTTGTATGAGTAAAACCATTCCCCACCTACGAGTATATTTGTTACTTG GAGGTTTTGGCCTTAAGGATGTAAAAAAAAATGAGGTTGGCGAGAGAGTG GTATTATGAGGCCTAGAAACAGATAAGAAAGACTTGTGGACTTCTTGGGC TGCAAAAGTTGTGTTGTAGGTATTAAGGTTGCTTGGAAAATGTCTTGTAT TGCACATGTATTGCCACATTGAAAGTGGGGCTTGACTAGGACTTAAACAC AACCATGCAAATATTGAAAGGAACCCTACAGAGTGGACTACAATAAGGTT GTTCCAAGGGAATTATCTAAAATGGTGAAAATCTGGGGTTGCTTGTTTTG GGAAATGGTTTACAACATTCACAGACAATGATTTATTTTTTGGATAAAAG TGTATCTCATACTAGTAATGCTAAACCTATATCTTATCAATGTGGCCTAC AGGGCAGCAAGGAAAGGAGTATGTCCTTGTTTTTGTAAATAGGCTCCAGC CAAGCCAAACTGAAAATGCCATGCTGAAGAGAGGCTAATCTTTGGAGGAA TTTTAGTTATAGCTTTTTTTATATGATGTAGGAGGATGAGCTGTTTAGCA TTTTATGTAGATGTCTTGTAGTGAGCACCCTGCGTAGATAGTGGCTATCG CTTGCGTTTGGCAGTCTGTGCCCTAAGTCAGGAATAGACTTGTATTGACC CTTTCATTAATTTGTAGTACTAAGAACCTGATATTTCTGGAACATCTAAC ATTTCACATTAACCTCATCCTCGTTAAACCAGGACCCATATCGCTCCACG TTACATCGGTCGCGGAATGGGCCCTGGTAAAAAGCTTCGCCACATATGGT TATGGCAGGTCGATGAGACTTGCTCATAAATTATTAATGAGCTGACCTTA TTTGACACAAACGGCAGTTGTAGCTCATGAATAATTAATGAGCTAGCCGT AACACGTAACCTGATTGGTCGATAGCTTCCCAGCGTTCTTTGCGCGTTGG CTTCCCACCTGATTGGTCGATAGCTTCCCAGCGTTCTTTGCGGGTTGGCT TCCCATGAGAGGAAGCAAACCCTCTGATTGGCTGAAGCTGTTTTGGTGCC GACGTCGTCATAACCATATGTGGCGAAGCTTTTTACCAGGGCCCATCCCG CGACCGATGTAACGTGGAGCGATATGGGTCCTGGTTTAACGAGGATGATT AACCTGAGAGATTACGTGTAACAGAGGTATTTCAAATTCCCATTTTATTG CAGTTCAGCTGAGGATACAGGGCGATTTTTTTCCTCTCAGTACAGGCACC CTCGGGTATGAAATCACTGTAACAAACTGTTAGTATGTATGTGTACTATA TTATGTGCGGAGTCCTTGGTCACATTACACATAGGCTTTGCTCAGTGTTG CTTAATTTCCACTTTCTTATAAATAATAATAACAGCAAAGTACATGTACA ACATTTCTACTTACCTAACAACTTTCAAAAACATTCAATCAGTGGTCCAA CTTACAAATTTCATGAACATTTTTCTAATGTATGTGTTCCTATTAATGTC CCATTATTACCTGGTAACAGTGAAACTGTATGACTAGCAGAACAGTTTAT GGTGTATTCTGGAATACTTGCAGGCTAGGAGAGTCAGTTTTTGTCAGCTT GTACATTTTGAACACTGGGTACTGACGTGTTGTACTGTTGCTTTGGCTCT TTAATGACATACCTTTCTCTGGAGTATTAGTTGTGTATTTATGTTCAATA AAAGTTCTTGTGTACAGAGTTCAATGTCTGTTACTTCCACATGACTCGAG TCAATATGTTCACTTTTCTCAAAGATCTTATATAGTGCTCTCAAAAGAAT GCTGAAATAATGTGACAATACATATGTGTCTCTTTGTACAGAAGACAAGA AAATAACCTAGTCGCAACACATG

Coding sequence (CDS) from alignment at Sc0000000:1623442..1632514+

>BlTCONS00000253 ID=BlTCONS00000253|Name=BlTCONS00000253|organism=Branchiostoma lanceolatum|type=CDS|length=582bp|location=Sequence derived from alignment at Sc0000000:1623442..1632514+ (Branchiostoma lanceolatum)
ATGGGAAAGAAGAAGATGAAGAAATCCGGAGCTGAGATGGAGGAAGAAGA
AGAGCCTGAAGAGTATGTTGTGGAGGAGGTGCGGGACCGACGTGTGCGCG
GCGGCAAGGTGGAGTTCCTTCTGAAGTGGAAGGGATACTCCGAGATCGAA
AATACTTGGGAGCCAGAGGAAAACCTGGACTGCCCCGATCTGATTGCGGA
GTTCATGAGGAAGTGGAACCAGAACAAAGCAGCCAAAACAGACGAAAAGA
AGAGAAAATCCACATCCACCGTGAACGGCACAGAAGAGTCCAAAAGGAAA
CGGAAGGCAGAAGAGGATGATGAGGACAAACCCCGCGGCTTCGACAGAGG
TCTTGAGCCGGAGAGAATTATCGGAGCTACAGATTCCAGTGGAGAGCTCA
TGTTCCTTATGAAGTGGAAGGGGAGCGAGGAGGCTGACCTGGTTCCCGCG
CGGATAGCCAACGTAAAATGCCCACAGATCGTCATCCAGTTCTATGAGGA
GAGGCTAACCTGGCATTCGTACCCCAGCGAAGAGAACCAGAACGACTCTG
GCAGCACTTCAGAAACCGTGAACGAAGTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000253BlTCONS00000253-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000253-exon-Sc0000000-1564993656:1623442..1623497BlTCONS00000253-exon-Sc0000000-1564993656:1623442..1623497Branchiostoma lanceolatumexon
BlTCONS00000253-exon-Sc0000000-1564993656:1623614..1623718BlTCONS00000253-exon-Sc0000000-1564993656:1623614..1623718Branchiostoma lanceolatumexon
BlTCONS00000253-exon-Sc0000000-1564993656:1626629..1626810BlTCONS00000253-exon-Sc0000000-1564993656:1626629..1626810Branchiostoma lanceolatumexon
BlTCONS00000253-exon-Sc0000000-1564993656:1627921..1628092BlTCONS00000253-exon-Sc0000000-1564993656:1627921..1628092Branchiostoma lanceolatumexon
BlTCONS00000253-exon-Sc0000000-1564993656:1628876..1628976BlTCONS00000253-exon-Sc0000000-1564993656:1628876..1628976Branchiostoma lanceolatumexon
BlTCONS00000253-exon-Sc0000000-1564993656:1630193..1632514BlTCONS00000253-exon-Sc0000000-1564993656:1630193..1632514Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:1623442..1632514 +
Properties
Property NameValue
GeneIDBlCUFF000133