BlTCONS00000200 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000200
Unique NameBlTCONS00000200
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:1158358..1159982+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000200 ID=BlTCONS00000200|Name=BlTCONS00000200|organism=Branchiostoma lanceolatum|type=mRNA|length=1625bp|location=Sequence derived from alignment at Sc0000000:1158358..1159982+ (Branchiostoma lanceolatum)
CTCGAGTCTGACGAGGGGATCATCAGGCACGCGTTCGGCCGGGACGACGG GGAGGGCGGGAAGAGCCGCATGGTCCTGTGGAACCAGCCCGGAAATGACG TCACAGGGGTCATGGCCAGATGTGAGAAAGTAGCAGGAACAATGGAAAAG GTGGGTCAAAGTTTCTTGGTTATCTCATGTCAATAATCGTGTGTCAAAAT TTTATTTTGATTTGTTTAAGGGAGGGGGTGAATATTTTTCTATTTATGTC ATTTCATTTTATTTTACTTCCAGCTGTTGGGTGGGGAGGTGTACCACTAT CACACCAAACTGATGATGAAGGACGCGCGGACAGGGGGCGCTTTTGTCTG GCACCAGGACTACGGGTGAGTCAAGTACAGGTTACTACAAGAATAACTGA AAAATAAACAGTGTGCAATTCTTTGCAGTAACTGCTCTCGTCATCTTATC GATCTTTTCTGTGCATATCACTCACGCTACTGTATACATTATAATTTCTA GTGAAGCAATATGCGACAGATAGCAGGCTAAGATCCTGCTCAATTCTTTA GTATCCCAACTATTCAGCATAAATGGAATCTGGATTCGATAGTGGATTGA TTGACTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATT GATTGATTGATTGATTGATTGATTGGGTGAGTGAGTGATATTGATATTAC GTTTTACATTGTTTTTCTTCGTATACATGTGTTACACCCTCACTCCAGGT ACTGGTACGAGAACGGCTGCGTCTTCCCGGACATGGGGACGGTCTTCATC GCCCTGGACCCGGCTACTCGGGAGAACGGCTGCCTCAAGGTACCGTTTTT TTGGCGACGCCCACGGGGCGGGGATTTCATTTCATATTTATTGAAAAATT TTACCATTGTAAATAAAACAGCTCAGAAGCTCACTATTAGATAGCTTTGC TCTAGGCTTTCCTGGAGGGTTGTTAAGATTTTCTTGTGATTTTCTTGCCA CTACAGGTGATCCAAGGCTCTCAGCGGATTGGTCGGATTGATCACGTGCG CGTTGGGGACCAGGTGGGGGCGGATGTGTCACGTGTCACAGAGGTAAGAA TGACGTAGAGTTGGTTAGTAGACTTAGGCCCAGTTCACACACGCATTATC CAAGCACACTCGCAGGGCACTCAGCCAAAGTCCGACTAAGCGGAGTCGAT TTTGGACTGTGTAAACAGAAATGAAGGAATCTACTTGAGTAACTGCGAAA CCATGGTCAAGTTGCTTAGCATGGGGCAAGTCGGACTGAAGTTTAATTTT CAGTACGGCTTCCACGTTTCTAAAATAATAATGTACTCTCTCTCTCTCTT TCTCTCTCTCTCTCTCTCTCTCTTATTTCGCCCTCTACATCTCTCCTCTC TCTTGGAAATCTCAGGTCCAGAAGTTTCTCCCCTTGGTGCACGTTGAGAT GCAGCCGGGCGACGCGCTGTTCTTCCACTGTAACCTGCTGCACCGCAGCG AGCAGAACCACAGCGACCAGCGCCGCTGGGCCTTCCTGGTGGCGTACAAC CGGGCCTCCAACAACCCGGTCATGGAGCACCACCACCCACGCTACACACC CATGTCAAAGGTACGAACATCACAG

Coding sequence (CDS) from alignment at Sc0000000:1158358..1159982+

>BlTCONS00000200 ID=BlTCONS00000200|Name=BlTCONS00000200|organism=Branchiostoma lanceolatum|type=CDS|length=630bp|location=Sequence derived from alignment at Sc0000000:1158358..1159982+ (Branchiostoma lanceolatum)
CTCGAGTCTGACGAGGGGATCATCAGGCACGCGTTCGGCCGGGACGACGG
GGAGGGCGGGAAGAGCCGCATGGTCCTGTGGAACCAGCCCGGAAATGACG
TCACAGGGGTCATGGCCAGATGTGAGAAAGTAGCAGGAACAATGGAAAAG
CTGTTGGGTGGGGAGGTGTACCACTATCACACCAAACTGATGATGAAGGA
CGCGCGGACAGGGGGCGCTTTTGTCTGGCACCAGGACTACGGGTACTGGT
ACGAGAACGGCTGCGTCTTCCCGGACATGGGGACGGTCTTCATCGCCCTG
GACCCGGCTACTCGGGAGAACGGCTGCCTCAAGGTGATCCAAGGCTCTCA
GCGGATTGGTCGGATTGATCACGTGCGCGTTGGGGACCAGGTGGGGGCGG
ATGTGTCACGTGTCACAGAGGTCCAGAAGTTTCTCCCCTTGGTGCACGTT
GAGATGCAGCCGGGCGACGCGCTGTTCTTCCACTGTAACCTGCTGCACCG
CAGCGAGCAGAACCACAGCGACCAGCGCCGCTGGGCCTTCCTGGTGGCGT
ACAACCGGGCCTCCAACAACCCGGTCATGGAGCACCACCACCCACGCTAC
ACACCCATGTCAAAGGTACGAACATCACAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000200BlTCONS00000200-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000200-exon-Sc0000000-1564993656:1158358..1158507BlTCONS00000200-exon-Sc0000000-1564993656:1158358..1158507Branchiostoma lanceolatumexon
BlTCONS00000200-exon-Sc0000000-1564993656:1158631..1158722BlTCONS00000200-exon-Sc0000000-1564993656:1158631..1158722Branchiostoma lanceolatumexon
BlTCONS00000200-exon-Sc0000000-1564993656:1159106..1159196BlTCONS00000200-exon-Sc0000000-1564993656:1159106..1159196Branchiostoma lanceolatumexon
BlTCONS00000200-exon-Sc0000000-1564993656:1159364..1159450BlTCONS00000200-exon-Sc0000000-1564993656:1159364..1159450Branchiostoma lanceolatumexon
BlTCONS00000200-exon-Sc0000000-1564993656:1159773..1159982BlTCONS00000200-exon-Sc0000000-1564993656:1159773..1159982Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:1158358..1159982 +
Properties
Property NameValue
GeneIDBlCUFF000096