BlTCONS00000167 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000167
Unique NameBlTCONS00000167
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:1064116..1066383+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000167 ID=BlTCONS00000167|Name=BlTCONS00000167|organism=Branchiostoma lanceolatum|type=mRNA|length=2268bp|location=Sequence derived from alignment at Sc0000000:1064116..1066383+ (Branchiostoma lanceolatum)
ACTATCATAAGAAGCAGGTAAGAGTTGCAAACGTACACCCAAGTTTTCTG ATACGGAACGTAACATTTTAGGCTATATTTTTGGAGCGGCTATCACCGTA ACAGTTTAACTTATAGCCTATTTCTGGATGTGAATATGGTAGAATTATGA AGGGGGAGGGGGGCGAAGACAACCATATGCACGACACTCGCCACCTATTA AAAAACAAAGAGATTTGTTTTCGTCACGTTTCAAAACCTATAGCGTTTCG TGGTGTAACTGTAAGACACAAGTTCATTTTTTGGGATCAGGAGACAAAGC TTCATAATTGAAATGTCATACCGTACACAGCAGAGTTAGACATAGACTTG GGTGTATGTTTGTGTTTGTTGGTGGGTGGAAAGAGGGGGAGGGTATTTAC ACGCTGTTTTCCACAATGTATATCCCGGCAGAAGTGCAAGGTATGCTTGT TGGCATTAGAACGGAGTAATATCAGACTCATGTCAGATTATCAGTTTGAA CTCTTTACGATTTCTTTTTTGATAAACCGATCTTTTCCCGGCCGCCCTCT CACAATTAGTTGAGGGAATTTTATTGATTTCTCCCGACGTCATTTGGGGT CATGATAGTCGTCAGGTTTAATTATTAAAGTAATAGTGTCATTCTTCGTC ATATGAAGTAAAATTAAGTTGTTTGACTGTTCATATCCCCTCCCCCAATA GTAATGGAAGATTCCAGTGGTGAACATTCCACTGGGAACGAGATGGACCA TCATAGAGACCCTGAGAAGGAGATGAACCATGCTGGGCATCCTGGGAAGG AGAGTGACAGCAGGGAGACCCAGACAAAAGACATGGGCCTGCAGCAAGAA ACGTGTGATGTGAATTTTTCCCCAAAGTCAACCTCACGGGTACATGAGAG CAGAGGCAATATGGGAAGGCGTATACTGGTGAGAAACCCTACATGTGTGG GGAGTGCGGGTACAGGACGAATCTTAAGCCTTCCTTATCCCGACATATGA AAACCCACACAGGAGAAAAGCCTTACAAGTGTGACCAGTGTGACTATTCT ACTATACAGAAATACACATTTGATTTACACCGTACAAAGCATAGTGGTGA GAAACCCTACATATGTGGGGAGTGTGGGTACAGGACAGCTCTAAAGCACC ACTGGTCCCAACATCTGAGAACTCATACAGGGGAAAAACCATTCAAATGT GACCAGTGCGACTATTCTGCAGCACAAACATGTAATTTAGACAGGCATAT AGCAGTAGAACACAGCGGTGAGAAACCCTACAATTGTGGGGAGTGTGAGT ACAAAACAGTTTGTAAGTTTACCTTAGCACAACATATGAGAACCCATACG GGAGAAAAACCCTACAAATGTGACCAGTGCGACTATTCCGCAGCACGGAA ATTCACTTTGGACCAACATCTAGCAAAACATACTGGTGACAAACCCTACA TGTGTGGGGAGTGTGGCTTCAGGACAGCTCAAAGGTCTAGCTTATCACGA CATATGAGAACCCATACAGGAGAAAAACCATATAGCTGCCATCTGTGTAA CTACTCTGCAGCTAAGAAATACCACCTGTCTAAACATTTGAAAACACATG CGAAAGAAACTAAATCTACATGTGTGACAAATGTGCAGCACACAACCTTG TAAGGAATGTTCTCCAGAAGCGTATTTGTGTGTAATGACAATGAAAACAA TACGTAACCATGCTAACTATAGTCAATCTTTACCTGGACACCGTAAATAC TCTGTAGGAAAGAAAGGTACTTNTACATGTGTGACAAATGTGCAGCACAC AACTTTGTAAGGAATGTTCCCTCCAGAAGCGTATTTGTGTGTAATGACAA TGAAAACAATAAGTAACCTTGCTAACTATAGTCAATGTTTACCTGGACCC CGTAAATACTCTGTAGGAAAGAAAGGTACAGTTTATTTGTTTTTGACGTT CACTGCAGAAACGTTTGTGATCACAGGATTACCTTGGATATTTTATTATC GGTTTTCTCACTTGATTCAAATCAATTTGTGCGAAAGAATAATCTAACAT TTGCAAAAAAAGCATATTTTATACACTAAATGTTCTATGTGTTCAATGTA ATAACAATAAATGTTATAGTTATACTTACATGTTCAAGAAAATGGCGTTA TTCTGGTAGATATGTTTTCACGCGTTAAATACTTGAAATATGGTAAATAT GTTCTTGATCATCAGAGTATCTACACGTTTTTTACATCGAATACTTGACA TTTCTAGTGAGACTAGTT

Coding sequence (CDS) from alignment at Sc0000000:1064116..1066383+

>BlTCONS00000167 ID=BlTCONS00000167|Name=BlTCONS00000167|organism=Branchiostoma lanceolatum|type=CDS|length=711bp|location=Sequence derived from alignment at Sc0000000:1064116..1066383+ (Branchiostoma lanceolatum)
ATGTGTGGGGAGTGCGGGTACAGGACGAATCTTAAGCCTTCCTTATCCCG
ACATATGAAAACCCACACAGGAGAAAAGCCTTACAAGTGTGACCAGTGTG
ACTATTCTACTATACAGAAATACACATTTGATTTACACCGTACAAAGCAT
AGTGGTGAGAAACCCTACATATGTGGGGAGTGTGGGTACAGGACAGCTCT
AAAGCACCACTGGTCCCAACATCTGAGAACTCATACAGGGGAAAAACCAT
TCAAATGTGACCAGTGCGACTATTCTGCAGCACAAACATGTAATTTAGAC
AGGCATATAGCAGTAGAACACAGCGGTGAGAAACCCTACAATTGTGGGGA
GTGTGAGTACAAAACAGTTTGTAAGTTTACCTTAGCACAACATATGAGAA
CCCATACGGGAGAAAAACCCTACAAATGTGACCAGTGCGACTATTCCGCA
GCACGGAAATTCACTTTGGACCAACATCTAGCAAAACATACTGGTGACAA
ACCCTACATGTGTGGGGAGTGTGGCTTCAGGACAGCTCAAAGGTCTAGCT
TATCACGACATATGAGAACCCATACAGGAGAAAAACCATATAGCTGCCAT
CTGTGTAACTACTCTGCAGCTAAGAAATACCACCTGTCTAAACATTTGAA
AACACATGCGAAAGAAACTAAATCTACATGTGTGACAAATGTGCAGCACA
CAACTTTGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000167-exon-Sc0000000-1564993656:1064116..1064132BlTCONS00000167-exon-Sc0000000-1564993656:1064116..1064132Branchiostoma lanceolatumexon
BlTCONS00000167-exon-Sc0000000-1564993656:1064817..1065734BlTCONS00000167-exon-Sc0000000-1564993656:1064817..1065734Branchiostoma lanceolatumexon
BlTCONS00000167-exon-Sc0000000-1564993656:1065892..1066383BlTCONS00000167-exon-Sc0000000-1564993656:1065892..1066383Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000167BlTCONS00000167-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:1064116..1066383 +
Properties
Property NameValue
GeneIDBlCUFF000088