BlTCONS00000104 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000104
Unique NameBlTCONS00000104
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:778439..785072+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000104 ID=BlTCONS00000104|Name=BlTCONS00000104|organism=Branchiostoma lanceolatum|type=mRNA|length=6634bp|location=Sequence derived from alignment at Sc0000000:778439..785072+ (Branchiostoma lanceolatum)
CAGATACCTGGGCGGAAATGGCGCGGACCCCAACCTGCGCCTGCGGAATG CTGGGAAGGATGACGCAGGCATGTACACGTGCGTGGCCGATCACGAGGCG AGGCAGGGCAGGGCCAGTCTCAAGTTAGAGGTGCTCTGTGAGTAGATATT TGTTTGTTTGGAGAGGCAGGGCAGGGCCAGTCTCAAGTTAGAGGTGCTCT ATGAACAGATATTTGTCTGTATGTTTGTTCGTTTGTTTGTTTTTGTGAGG TTAGGGGTGCCAGTTTTAGAGTACAGGAACCTTGTGAGTGGACATGTATT CGTTCGTTCGTTTGTATATTTTGGAAAAGCAGTAAGTGGTTTATTGGAGT CTATGAAGGAGAAGGCGATTTTCAAGTTTAAGAGCTAGGAGCTTGGTAGT AGATTTTTATTGACTTTTCGTTGTGATAGCGAGGATAAATGTCAAGCTGT CAGCTAAATCTAGAAAGGAACACTTTGCTAATTCTTGAATTCTTCACGTG CGCGTTTTCCTCTCAGATCCGCCCACCATAATCCACATCTCGGGATCGCT CACCATGGCGTCCGGCGACTCCGTCAAGCTGTACTGTCGGGCAGACGGCT ACCCCAAACCGGTCATCAGGTACTGTTGAACTCTAACCTATAATTTAAAA CCCGTTATCAGGTACTGCTGCACTTCAACCTTTAACCTCAAACCGGTCAT TAGATACTCATGCACTTTCACCTTTAACATTAAACCGGTCATCACGTGCT ACTGCACTTTCAACATCGGGACAAGAATTTTCTTGTAATAAGTCCGTTCA CAATCGAATTGCGCGTTTCGAGATGCACTTTTTAGATCAAAATTGAAGGT CATTAGATATAGTCAAAATACGTCTGGACATGTATTTCTAAGTGAGGAGC CTGATATAAACACCGTTTATTTTCCTGCGCAAGTGCAGTTCGAACCATGA ACCAGCATATTCACAAAACAAAATATCTTTTGATATTTGAAACAGCGAAA TGAACGCTGCTTGAAAGAAAAACAAAACAAATTTGCCTCTGAACTTCCCC AGGTGGTTGAAGGAGGGGCTTCTGCTGCCGACTGACCTTCAAACTTCAAC AGGAGAGGTCAGCATGATGACCTTGTCCAACCTCAACATCAACGACAGCG GCCAGTACGCATGCTCCGCCAGCAATGACGTCGGCAGCGCGGACGCCAAA ACGCTGAGGCTTACTGTGCAAGGTGAGGGTTAACGCGTTATGTTACGTCA CTAGTGTGAGAGGTCAGTTCCGTGATGTCATTGCGACAGGTCAGTTCCGT TGCCGACAGAGAATGTTCGTCCACTCAATTGCATAAAAAAACCCAAAGCG CCTGAACCTGTGGCAAAAGGCAGTCAGGCCTATTAAGTGCGTGCTATTGG AGATGATAAAAACTTTTGGGCGATTCTTCCGACGAAGATCAGGATCTCTG CCAGTAAAATCTGTGACAATCTCTGTGGATCGTGATCTCTTGTCGATAGA ATCCTCGATTCTGCCAGATTGCAACCTCTACCCTAACATTTGCTTCCCAC GCCTGCAGACATAGTGGCCCCTCTGCGCCGGCCTGCCTGTAATACTAACC TCGGCTCTGTGATACTGACATTTGCCCTGTAATACTGACCTTTGCCCTGT GACACTGACATTTGCCCTATAATAATGATCTTTGCCCTGTGACACTGCCA TTTGCCCTGTAATAATGACCTTTGCCCTGTGACACTGACATTTACCCTGT AATAATGACCTTTGCCCGGTGACACTGGCATTTGCCCTGTAATTCTGACC TTTGCCCTGTGACACTGACCTCTGTCCTGTAATACTGACCTTTGCCCTGC ACCTGCAGACATGGTGGCCCGGCAGAGCTCCGGGAAGAAAGGCAGCTCCA CGCGGACCGCCATCATCGCCGGGGCCGTCGCGGGGGGTCTGTGGCTGCTG CTGTGCCTCGTGCTGCTCATCATCTGGGCCAGGTGAAGATGCTGAATTTC ATTTCATCTAGATCAATTCGCCACAAAACAGGGCCCATTGAGAGCCTCTC AGACCCTTTGCGTTACACTGACCGGATGTTGTGATGACAGATGTTTGTTC CCCTATGACCTGAAAAGTTTCAATTTATCATAAAACCCACCAATTTGATG ACTCCTCCCTGCAGGCGGCGTCGGGAGCGTCTGAAGAAGCGCGCCAGGAA CCCGCCGTACTACTCCGTCGGCATGAAGGAGTTCGACTACTACCCCAGAG GGAGGCAGTCCATAGACAAGGACAGCGGTGCCGTGCGGTACCTCACGGAC TCACACAGCGACATGGGTAAGTACGGTACAGGGGGAGGCAGTCCATAGAC AAGGACAGCGGGGCCGTGCGGTACCTCACGGACTCACACAGCGACATGGG TAAGTACGGTACAGGGGGAGGCAGTCCATAGACAAGGACAGCGGTGCCGT GCGGTACCTCACGGACTCACACAGCGACATGGGTAAGTACGGTACAGGGG GAGGCAGTCCATAGACAAGGACAGCGGGACCGTGCGCTACCTCACGGACT CCCACAGCGACATGGGTAATGATGAGACGTTAGATTTTTCCTACATCGCG TATGTATTAGTATGTCGTAGTATGTCATATCTATCAAGTCTACTCAGAAC TTGGACAGCCAGAAAGGCCTACAGTGAATATTTAAGGGCTATTGTATGAA AGTGTGGGTACATGTGACGTCATGTGTGGAGATATTGTTGTGGGCGGGTA CATGTGACGTCATGTGTGGAGATAGGGTTGTGGGCGGGTAGTTGTGACGT CATGTGTGGAGATAGGGTTGTGTGTGGGTACATGTGACGTCATGTCTTGT TTCCCGGCAGGCCTAGGTGCGACGGTGCCGCTGGCTGTGGGTACATGTCG TCATGTGTGGAGTTCGAGCTGTGTGCATGTGTGGGTATAGATGACGTCAT GTGTGGAGATAGAGTTTATGTGTGGGTACATGTACATGTGACGTAATGTG TTGTTTTCCCGTCAGGCCTCGGTGCGACCGTGCCGCTAGCTGTGGAGTAC AACAACAAACGGGACAACAGGAAATCCGGGGACGGGGATTCAGGTGAGAC GGGATCAAATCACAATTATCTATTCCCCATTGTTAATTGATGATTTGTAT CATTTATTGTGACGTTGGAAAGGTTCGCTAAGGTCCTGTACTGGCTGTAG ACCTATGTCCCCACAAAGGTCATAGATTTGTTCATACGTACCCTCGTTTA TCAATAGTAGTTGGTAATTAATTATTGATGATTATCGGTTATTGATACTC AGTGACGTGGCCAACAGACGTTACAGAATTTTATTGATCGATTGATAACC TACTATTGATTGGTTATCAGTGACGTGGTACAGGTTTGCGAAGGTGCTAT ACACGTACGATGGACATTGCAGATGTGTTCAATTGATAACTATTGATAAA AAGATTGATTGTCATTCATTTGTTGATTGATTCTAGTGACGTGGCGCAGG TTCGCTAAGGTGCTGTACACGCGCGTGCCGACAGACGAAGACATTACTTC TTGTCTTTAATGATAATGAATTAGTGATTGATTCGTTATTGACTGATTAT TGATCATCTATTATTGATTGATCCCAGTGACGTGGCGCAGGTTCGCGAAG GTCCTCTACACGTACGTCCCCACGGATGAGGACGAGTTGCGGCTGCAGTC CGGTGACGTAGTGGAGGTCCTGAAGGGGGAGGGGGGCGGATGGTGGTACG GAAAACTCAACGGCAAGGCGGGGCTGTTCCCCTCCAACTACGTGGAAATC ATCAATCTGAACGGTAGGCTTATGTATTTAAAGTTTACAAGTTTTATTCA CGTTCGACACGGGTGTTCCAGACTGCCGGGCGATATATTGGGTTATCACA TGGGATCCTACTTGTGTCACACGAGCTTCCATCGGATCGATAATTCGAAC GCACTTCCAGTGCACCTATTTTCCCTCTATCTACATGGAAATCATCTACC TTAACGGCAGGCAATTAATATATCTTAATTGTACAAGTCACAGTTTCTAT ACTCACCAATGGGGGGGGGGGGTCATATTGCCTGAAGATGGTCGGAGTCA CTGTCGAAATTGATTCTTAATCCTGTGTTGGATTTAAAGCAATTTCTAAT AAAAAGATACCCTTCTCACTGTTACCAAACTAAATATAAAAATAGATAAG AAATAATAAAGGATGCATCCATCCTGTTGCCAACACCTCTCAGATTTCAT TCTGTGAAGTTTGATAAATAGATAAGTAAATAAAATGTCTCTTTTCTCTC TCTTTTTTTCCTCCTCAGAGACGCTGCGGCGAAAGGGCGCGAGTCCGCGG CCCAAGTCGCACCCGCAGCTCGGGGCGGGGTGCAGAGACGTCAGCGACAA CCAGAACAACCTGAGCCGGGAGGTGCGCCGTGGCAGTCGTGAGGGCGAGC TGCTCAGGGACGGGCTCAGGACTTAACCCTCGCGACGCTTAGGACGGCCT TAGGACTTAACCCTCGTAGCGCTAAGGACGGCATGAGGACCTAACCAATG TTACGGACTTAACTCTCATGACGCTTCGGACGGGATTATAACTTAACTCT CGCGACACTAAGGACGGGCTCAAGACGTAACCCTCGCGACACTAAGGACG GCCTTAGGACTTAACCCTCGAGACGCTTAGGTCGGCCTTAGGACTTAACC CTCACAGCGCTAAGGATGGCATCAGGACTTAACTTTCGCGACACTTAGGA CAGGCTTAGGACTTAACCTTCTCAGCGCTAAGGACGGGCTTAGTACTAAT CTCCAAGCAGATCTATAGGTTGCATGAAGACCGTATCAAATTGGCAGAGG AAGTACGTTTTGCAACCCAAGCATTACATTACAAGCTCCTTCTTCCAGTT GGATACGGTCTTTGCAATCCATTGGGTCTGGTTGGAAACTACTTAGTACG GGCTTAGGACTCAACGCTAAGGATGGACTTAATTCTTACAACGCTACTGA CGGGCTCGGGACTTAACCCTCGCGACACGAAGGGCGGCCTCGGGACTTAA CCCTCGCGACGCTAAGGACGGACTGGTCTCTCACATAGCTAAGGACGGAT TTGGGACTTAACCCTTACAACGCTTAGGACGGACTACTTTTTCACATCGA GGGGGTTGAGCTCGGGACCTAACACTCACATACAGCTAAGGATGAGCCCA GGACCGAACCTTTTCAATGCTAAGGATGGACTTAAATCTCATGACGCTTA GGACGGGCTTAGGGCTTAATCTTCTCTCCGTTAAGAACTTATCAAAACAC TTGGGACTTACTTAGGACTTCAACCCTCACAACGCTGAGGACGGGATAAG GAATTAACCCTCGTGACGCTACGAACGGGCTCAGGACTTTACTCTTATTA AGTAAGGACGGGCTCAGGATATAACCTTCTCAGCGCTAAGGATGGGCCCA CAACGTAACCTTCACAACGCTGAGGATGTGCGTAAAACTTCGCAACGCTA AGGACTGATAGACTAAAGGCCGGGATGCCATACTTCGAACGCTCTTAACC TTCGGCACGCTACGGCTACGGACTGTCCGGGATCCGGGCTGAACAGTTAA CCCACGGTACCCAAGGGTAGCCTGGTGGCCATGTTGAAACAGGGTTAACT GTTGTGTACACGTCACTGGGAACACATATTTCAGTACAGTTCATCCATTG CAACATAACAGGAACACTCCGTTCTCTGTATTGTATACAAAATAGACTTT TAGTAAGAAATATACATGTAGATTAAGGGAATATTTCATCCCCAATCTCT GCAAAAGGCGACACAAGCGGAATTTTTGGTCGAACCCAAATGTGATACGA GAGTAATTTAGAATGAAGAAATGAAAAAAAAAAGGTTTTCGTCCCCAAAG CCAACAAGGGACAAACAAGACATGCCATATTTAGTATATAGTACATATTA GTGGATTCCGTTGGTTTTAGCCGTATTCTGTATATTCGATTCTGACATTT ATCTTTTCATATTTCACATTCTGAGTATACACGGTTGACTGTCCTCTATA AAACAACGGTTGTATGGCCTAACAATGTACAGGAAATGCTCACTACTCAA TTAGGAGAAAAAGATATTGTAAATTCCTTCTATGTAATAATACGCCAAGG ATATCACATATGCAAGGCGTCGCTCTCTGCGCACCATTTACTAGATGAAA TATTCTTCTGAAACTGCTGCGTACAGCAGTTGTCGGCGGTTGCGCTGTAC CATACACTCAGTAATGTACATATTTATTGGAAATCGACCGTTTCCGGGAA TGGAGTAATAAATACTGGTGTTTATGATCCACGTCTGGTTTCTGCTTGTG TGGTTGGGCTGTTGATCATACCATTGCCAAATAAGGCAATATGCTTTGAA ATGTTTCCGGGAATTGAGTAATAGATACTGGTGTTTATGATCCACGTCTG CCTTCTGCTTGTGTGGTAGGGCTGTTGATCATAGTCATCGTACCAAATAA GGCAGCATGTTTTGAAATGTTTCCGGGAATTGAGTAATAGATGCTGGTGT TTATGATCACATCTGCCTTCTGCTTGCGGGGTAGGGCTATAGTCATCATA CCAAATAAGGCAGTATGTTTTGAAATGTTTCCGG

Coding sequence (CDS) from alignment at Sc0000000:778439..785072+

>BlTCONS00000104 ID=BlTCONS00000104|Name=BlTCONS00000104|organism=Branchiostoma lanceolatum|type=CDS|length=1107bp|location=Sequence derived from alignment at Sc0000000:778439..785072+ (Branchiostoma lanceolatum)
AGATACCTGGGCGGAAATGGCGCGGACCCCAACCTGCGCCTGCGGAATGC
TGGGAAGGATGACGCAGGCATGTACACGTGCGTGGCCGATCACGAGGCGA
GGCAGGGCAGGGCCAGTCTCAAGTTAGAGGTGCTCTATCCGCCCACCATA
ATCCACATCTCGGGATCGCTCACCATGGCGTCCGGCGACTCCGTCAAGCT
GTACTGTCGGGCAGACGGCTACCCCAAACCGGTCATCAGGTGGTTGAAGG
AGGGGCTTCTGCTGCCGACTGACCTTCAAACTTCAACAGGAGAGGTCAGC
ATGATGACCTTGTCCAACCTCAACATCAACGACAGCGGCCAGTACGCATG
CTCCGCCAGCAATGACGTCGGCAGCGCGGACGCCAAAACGCTGAGGCTTA
CTGTGCAAGACATGGTGGCCCGGCAGAGCTCCGGGAAGAAAGGCAGCTCC
ACGCGGACCGCCATCATCGCCGGGGCCGTCGCGGGGGGTCTGTGGCTGCT
GCTGTGCCTCGTGCTGCTCATCATCTGGGCCAGGCGGCGTCGGGAGCGTC
TGAAGAAGCGCGCCAGGAACCCGCCGTACTACTCCGTCGGCATGAAGGAG
TTCGACTACTACCCCAGAGGGAGGCAGTCCATAGACAAGGACAGCGGGGC
CGTGCGGTACCTCACGGACTCACACAGCGACATGGGCCTCGGTGCGACCG
TGCCGCTAGCTGTGGAGTACAACAACAAACGGGACAACAGGAAATCCGGG
GACGGGGATTCAGTGACGTGGCGCAGGTTCGCGAAGGTCCTCTACACGTA
CGTCCCCACGGATGAGGACGAGTTGCGGCTGCAGTCCGGTGACGTAGTGG
AGGTCCTGAAGGGGGAGGGGGGCGGATGGTGGTACGGAAAACTCAACGGC
AAGGCGGGGCTGTTCCCCTCCAACTACGTGGAAATCATCAATCTGAACGA
GACGCTGCGGCGAAAGGGCGCGAGTCCGCGGCCCAAGTCGCACCCGCAGC
TCGGGGCGGGGTGCAGAGACGTCAGCGACAACCAGAACAACCTGAGCCGG
GAGGTGCGCCGTGGCAGTCGTGAGGGCGAGCTGCTCAGGGACGGGCTCAG
GACTTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000104-exon-Sc0000000-1564993656:778439..778575BlTCONS00000104-exon-Sc0000000-1564993656:778439..778575Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:778955..779057BlTCONS00000104-exon-Sc0000000-1564993656:778955..779057Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:779491..779660BlTCONS00000104-exon-Sc0000000-1564993656:779491..779660Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:780297..780420BlTCONS00000104-exon-Sc0000000-1564993656:780297..780420Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:780603..780692BlTCONS00000104-exon-Sc0000000-1564993656:780603..780692Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:780776..780837BlTCONS00000104-exon-Sc0000000-1564993656:780776..780837Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:781454..781531BlTCONS00000104-exon-Sc0000000-1564993656:781454..781531Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:782066..782251BlTCONS00000104-exon-Sc0000000-1564993656:782066..782251Branchiostoma lanceolatumexon
BlTCONS00000104-exon-Sc0000000-1564993656:782757..785072BlTCONS00000104-exon-Sc0000000-1564993656:782757..785072Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000104BlTCONS00000104-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:778439..785072 +
Properties
Property NameValue
GeneIDBlCUFF000052