BlTCONS00000085 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00000085
Unique NameBlTCONS00000085
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000000:614838..618835+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00000085 ID=BlTCONS00000085|Name=BlTCONS00000085|organism=Branchiostoma lanceolatum|type=mRNA|length=3998bp|location=Sequence derived from alignment at Sc0000000:614838..618835+ (Branchiostoma lanceolatum)
GTCCACCTCGCACATCTGCTTGGAGCCAGGTTAGGTTACAGGAGGGCGTT GCCCTGATATCCCATCCTGCCCCGCGGCTGACCTTAGCGTCCCCCCCTCT CCTGTCGTCTGCACGGTTCACTCACGAAATCACAGATTTTACCGCAGTTT TGCTCAAAATTAAACATTTCTGTGGACGCATCTTTTACTGTCTGTATCAG TGAATAATTTATTACCTATAGATCAAATATCTTAGCCCAGAATTCCGTAC AAATCGATATATTTGCGTCCGGATTTGCGGAGAGAAAAACTGCCGAGTAA ACAAAGGCTGCCGGTCTGATCAGCTGAAGTACAGAGTTGTTCTCCACAGT TCGTCTGTTTCTAACCGCCAAACGTCGTCTGTAGATGTCGGGAGGTGCGA TGTCTGCAGCTAACAGTGTACCGCCACAGGTAAACTATGTGCTGTTTTTC TTAGATTTTAATTTAGAGCCGGGATGGGTGAGTGAGCCTCAGTTTAAATG GCCAGTGTGTATAAATATTTGAAATGAATGGAGACGTTGTTCATTGAAGG AATGAATGAATCAGTCTATTCAATGACTAGAGTTGTGGGCAGGGAATTTT ATGTTAGGAAAATGATTATTTTTGAACTGTGCATAGGCCATAACACCAGA AAGCTATGATCTGACGAAAGCTTTTTTCAAGTGTTCGATTTCAAATAATT GTTTCATGAAAAATGTCGGTGAAACGATTGTCCTATATCGTTTTGTTTTT CACAGTTTACAGAAGTCCATAGTTGGTAGGAGGGAAACCTTGTCTTCCAT GTACACTATGGGTCTGTGGGGGCGTGAATAACAGAATGGCTTCATGAATA TCAATAAACACCCCAGCTAATTAATTAAGTCTCATGTTTGAAAACACAAA AGAGTCTCCACTGGTTCAGAAACAGGTTCCTCACAGCAAGGAGGATTTTT TGTAAACTTTGTTCGGATACATAGATGATAGAAGGAGAGTATTTCTGAGC AGACCTGTATTTCATTTCCTACAGACTGACTCTCCTGACCAATTATTTAC CCTACTTTTGTTGCAAATTATACAATCCACAACTTCTTATGCTAGCATAG GTTGACCTAGCAAACTTGTACAAAGGAGACCAAGAAATAGATATGCATCA CTGCAGAAAAATCTTGCTTCTTTTGAAATTTGATAATTTGTATGTTTCTC ATATATGATAGCACGCAGCAAAGGAGGTTCTAATCCATACTGTTGCGTTT CTTCAGCCCCTTCCTCAGGAGGTCCCGATGGAGGCCACGGCAGGCAAGTC TGCGCCCAAGAAGAGGGGCCGCGGACGACCTCCCAAGGCCAAGCAGGCCA AGCAGGAGAAGATCACAGACACCATGAAGGTCGAGAAGAAGCCCAAGCGC AAGATCGACCGCTTCAAGGGTACGCCTGAGTCGGAGCTTCTGCTGCGTAC GCTGCCCGATCATCTCAGTCCGAACTTGGACATCGTGATCATCGGCATCA ACCCTGGTCTGTATCTGTTTCTGTGTAGCTGGTATAACCTAAAATGCACA TCCTCCTTCCAGTTACAAGCATTGTTTATAAATATATCTCTTTGATGAAT AAATAAGTTCTAGTATATCTAGTGAGGATGCCCTACTGTATACAGTATTG GCAATGAGATTCAGAATGCCAGGTGCAGAATGACTGCTACATTGTACCAA CACAGATGAACTTTTAAGTGAACACCAGTTTATGAGTCATTCTTTGTACA TTACACCACACAAAGATCTGATGCCCTTTGTAATGGCCACAGGCTAGCTA GTTGGGCAGCCCTGGCTGTGTGTGCTGAACAGCCAGAAACATAAATAGGA TATCTTTTTCTCTTGTACAGATTTGATGGAGCGACATTCTAGTGACGATG AAGAAGAGTGATGGATCATTGATGTGTCAGTCGAAACATTCTTAACAACC GCAAACGATACATAAAACATATTCTCTCCTGTACACCACACACAGGTCTG ATGGCAGCGTATGTTGGCCACCACTACCCGGGCCCTGGTAACCACCTCTG GAAGTGCCTGTACATGTCCAGACTCATCGACCGCCCCATGACAGCCATGG ATGACTTCAAACTCATCAACAACGGCATCGGTTTCACCAACGTCGTGGAA CGGACAACGCCGGGAAGCAAGGATCTCTCGCGGAAGGAAATGATGGAGGG GGCGAAGATTCTCGTCGGCAAGCTCCAGAAGTACCAGCCCCGTATCGCTG CCTTCAACGGGAAGAGCATCTACGACGCGTTCTCTTCGGTTTTCTTTGGG AAGAAGCTGAAGAAGGACTTCATGTTTGGTCAGCAGCCGGACTTGGTTCC CGGGACGACCACCAGGATATTTGTCATGCCGTCTTCTAGTGCGAGATGTG CACAGTTTCCAAGGGCTCAGGATAAGGTAAGATTGCTTCATTGTTCTCTC TCTAAATGGCCAGAGAAGTTGGTCATTTTGAATGAATTAACTGGTAAGGG AGGTTTAAATCTGATCTAGTCTATTCAATCGCTAGAGTTATGGGTAGGGA GTTTCGTGATAAGAAAACATTTTTTGTTTGAAATGTGCATAGGACAAAAT ACTCTCTCTCTCTCTCTCTCTCCCCCCTATTTTACGTCTTCTATTCCCCA TCATATGGGGGTTGGACGTGCTTGCACATGGATGGGAGAGCCCCAGAACT CCTCATCAAGTGCAAGTCTTGTTGTATTTTGCAACAATTTTTGTCTGTCT TGGAATCATCTAAGAAAGCATCTCCATGTCATTTGATATGGATCATGTGT TTAGACATTTCAGATGAAGTAGAGCTAGTCCTGTACATTTGCCTGACCCT GGACCTGAACAAAACAAACTGAATGGAATCCAAGAGGACCAGGACATCAT GATCTCTAGGAGACAGACTTTCCCACAAACACATTCTCCTGTTCTCCCTA CAGGTTCAGTTCTACCTTCGCCTGAAGAGACTGAGAAACGAACTCAAAGG AATCCAGGAGAACCGTGGCATGGGGGAAACATATCTTTCCTGATAACAGT GTTAGCAGGAAATATATGTTTCTCCCATGCCACGGTGACATTTCTCTTTT CTGTACTCCCTGCGGGTTTTTGTACCTGAGAAGTAGAAGACACATTTCCC TGTTCTTGTCTTACCTGCAGGTTCAGTTCTACCTGTGTCTTAAGAGACTG AGAAACGAACTGAAAGGAATCCAGGAGGACCGGGACATCGAGGAAACAAA CTTTCCCACTAACACATTCTCCTGTTCTTGTGTTCCCATCAGGTTCAGTT CTACCTATGTCTGAAGAGACTAAGAAACAAATCTGCCATAGCATGAATGT GGATTCAATGCATTTTTTATTTTCCTCAGGCCATCTTGATCTTCTACTGT AGTGTAGTGTAGCAATATGTTGTTATTTTTGTAAAAGACACATTTCCCTG TCCTTGTCTTACCTGCAGGTTCAGTTCTACCTGCGTCTGAAGAGACTAAG AAACGAGTTGAAGGGAATCCAGGAGGACACTAGACATCCAGGAGATAAAT CTTTCCTGCTAACACTTTTCCCTGTTCCTGTGTTCCCTACAGGTTCAGTT CTAACACATTCCCCTGTTCTTGTGTCGTCTGCAGGTTCAGTTCTACCTGC GTCTGAAGAGACTAAGGAACGAACTTAAAGGAATCCAGGAGGACCGGGAC ATCGAGGAAACGGACTACTCCTTCGATCTCATCAAGGCCATCGAGGACGC CAAGAGGACAAAGGTCAAGCAGGAGAAGAACTTTGACACGGACACCTGCG GGGGCGCACATGTGCATGTGGACACACCTGCAGCTCCAGGTGTGGCACCA GGTGTGGCGCCAGGTGTGGCAGCTGCAGGTGAAGCCCCCCAGCCCAACTG GGACCTCGGCGTGTTCCCTCCCATGGACTTTGTGGATCACATACCTGATA TCACCTCTCAGTAACTAGAGGGTTTCTTAGGATAAGGACTTAACTGAG

Coding sequence (CDS) from alignment at Sc0000000:614838..618835+

>BlTCONS00000085 ID=BlTCONS00000085|Name=BlTCONS00000085|organism=Branchiostoma lanceolatum|type=CDS|length=1056bp|location=Sequence derived from alignment at Sc0000000:614838..618835+ (Branchiostoma lanceolatum)
ATGTCGGGAGGTGCGATGTCTGCAGCTAACAGTGTACCGCCACAGCCCCT
TCCTCAGGAGGTCCCGATGGAGGCCACGGCAGGCAAGTCTGCGCCCAAGA
AGAGGGGCCGCGGACGACCTCCCAAGGCCAAGCAGGCCAAGCAGGAGAAG
ATCACAGACACCATGAAGGTCGAGAAGAAGCCCAAGCGCAAGATCGACCG
CTTCAAGGGTACGCCTGAGTCGGAGCTTCTGCTGCGTACGCTGCCCGATC
ATCTCAGTCCGAACTTGGACATCGTGATCATCGGCATCAACCCTGGTCTG
ATGGCAGCGTATGTTGGCCACCACTACCCGGGCCCTGGTAACCACCTCTG
GAAGTGCCTGTACATGTCCAGACTCATCGACCGCCCCATGACAGCCATGG
ATGACTTCAAACTCATCAACAACGGCATCGGTTTCACCAACGTCGTGGAA
CGGACAACGCCGGGAAGCAAGGATCTCTCGCGGAAGGAAATGATGGAGGG
GGCGAAGATTCTCGTCGGCAAGCTCCAGAAGTACCAGCCCCGTATCGCTG
CCTTCAACGGGAAGAGCATCTACGACGCGTTCTCTTCGGTTTTCTTTGGG
AAGAAGCTGAAGAAGGACTTCATGTTTGGTCAGCAGCCGGACTTGGTTCC
CGGGACGACCACCAGGATATTTGTCATGCCGTCTTCTAGTGCGAGATGTG
CACAGTTTCCAAGGGCTCAGGATAAGGTTCAGTTCTACCTGCGTCTGAAG
AGACTAAGGAACGAACTTAAAGGAATCCAGGAGGACCGGGACATCGAGGA
AACGGACTACTCCTTCGATCTCATCAAGGCCATCGAGGACGCCAAGAGGA
CAAAGGTCAAGCAGGAGAAGAACTTTGACACGGACACCTGCGGGGGCGCA
CATGTGCATGTGGACACACCTGCAGCTCCAGGTGTGGCACCAGGTGTGGC
GCCAGGTGTGGCAGCTGCAGGTGAAGCCCCCCAGCCCAACTGGGACCTCG
GCGTGTTCCCTCCCATGGACTTTGTGGATCACATACCTGATATCACCTCT
CAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000085BlTCONS00000085-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00000085-exon-Sc0000000-1564993656:614838..615266BlTCONS00000085-exon-Sc0000000-1564993656:614838..615266Branchiostoma lanceolatumexon
BlTCONS00000085-exon-Sc0000000-1564993656:616094..616343BlTCONS00000085-exon-Sc0000000-1564993656:616094..616343Branchiostoma lanceolatumexon
BlTCONS00000085-exon-Sc0000000-1564993656:616833..617263BlTCONS00000085-exon-Sc0000000-1564993656:616833..617263Branchiostoma lanceolatumexon
BlTCONS00000085-exon-Sc0000000-1564993656:618472..618835BlTCONS00000085-exon-Sc0000000-1564993656:618472..618835Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:614838..618835 +
Properties
Property NameValue
GeneIDBlCUFF000046